Strain Fitness in Marinobacter adhaerens HP15 around HP15_2262

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2260 and HP15_2261 are separated by 24 nucleotidesHP15_2261 and HP15_2262 are separated by 55 nucleotidesHP15_2262 and HP15_2263 are separated by 60 nucleotides HP15_2260: HP15_2260 - small-conductance mechanosensitive channel, at 2,381,576 to 2,382,799 _2260 HP15_2261: HP15_2261 - ErfK/YbiS/YcfS/YnhG family protein, at 2,382,824 to 2,383,318 _2261 HP15_2262: HP15_2262 - transcriptional Regulator, TetR family protein, at 2,383,374 to 2,384,051 _2262 HP15_2263: HP15_2263 - conserved hypothetical protein, membrane, at 2,384,112 to 2,384,915 _2263 Position (kb) 2383 2384 2385Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2382.385 kb on - strand, within HP15_2260at 2382.451 kb on - strand, within HP15_2260at 2382.453 kb on + strand, within HP15_2260at 2382.461 kb on - strand, within HP15_2260at 2382.471 kb on - strand, within HP15_2260at 2382.490 kb on - strand, within HP15_2260at 2382.536 kb on + strand, within HP15_2260at 2382.546 kb on + strand, within HP15_2260at 2382.555 kb on + strand, within HP15_2260at 2382.610 kb on - strand, within HP15_2260at 2382.623 kb on - strand, within HP15_2260at 2382.624 kb on + strand, within HP15_2260at 2382.814 kb on - strandat 2382.819 kb on - strandat 2382.821 kb on + strandat 2383.321 kb on - strandat 2383.389 kb on - strandat 2383.508 kb on + strand, within HP15_2262at 2383.806 kb on - strand, within HP15_2262at 2383.937 kb on + strand, within HP15_2262at 2383.996 kb on + strandat 2384.151 kb on + strandat 2384.210 kb on - strand, within HP15_2263at 2384.351 kb on + strand, within HP15_2263at 2384.383 kb on - strand, within HP15_2263at 2384.696 kb on + strand, within HP15_2263at 2384.937 kb on - strandat 2384.954 kb on + strandat 2384.954 kb on + strandat 2384.955 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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2,382,385 - HP15_2260 0.66 +0.0
2,382,451 - HP15_2260 0.71 +0.9
2,382,453 + HP15_2260 0.72 -1.6
2,382,461 - HP15_2260 0.72 +0.4
2,382,471 - HP15_2260 0.73 -0.6
2,382,490 - HP15_2260 0.75 +0.5
2,382,536 + HP15_2260 0.78 -0.8
2,382,546 + HP15_2260 0.79 +0.5
2,382,555 + HP15_2260 0.80 -0.9
2,382,610 - HP15_2260 0.84 -0.1
2,382,623 - HP15_2260 0.86 -0.3
2,382,624 + HP15_2260 0.86 +0.7
2,382,814 - +0.5
2,382,819 - -0.3
2,382,821 + +0.4
2,383,321 - -0.6
2,383,389 - +0.9
2,383,508 + HP15_2262 0.20 +0.1
2,383,806 - HP15_2262 0.64 -0.5
2,383,937 + HP15_2262 0.83 -2.3
2,383,996 + -0.3
2,384,151 + +1.0
2,384,210 - HP15_2263 0.12 +0.8
2,384,351 + HP15_2263 0.30 +3.1
2,384,383 - HP15_2263 0.34 +0.0
2,384,696 + HP15_2263 0.73 +0.0
2,384,937 - +0.1
2,384,954 + +0.6
2,384,954 + +2.3
2,384,955 - -1.0

Or see this region's nucleotide sequence