Strain Fitness in Marinobacter adhaerens HP15 around HP15_2101

Experiment: m.b. 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2099 and HP15_2100 are separated by 6 nucleotidesHP15_2100 and HP15_2101 are separated by 187 nucleotidesHP15_2101 and HP15_2102 are separated by 11 nucleotidesHP15_2102 and HP15_2103 are separated by 86 nucleotidesHP15_2103 and HP15_2104 overlap by 4 nucleotides HP15_2099: HP15_2099 - DEAD/DEAH box helicase domain protein, at 2,198,259 to 2,199,542 _2099 HP15_2100: HP15_2100 - transporting ATPase, at 2,199,549 to 2,200,103 _2100 HP15_2101: HP15_2101 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 2,200,291 to 2,202,186 _2101 HP15_2102: HP15_2102 - SirA family protein, at 2,202,198 to 2,202,437 _2102 HP15_2103: HP15_2103 - antibiotic biosynthesis monooxygenase, at 2,202,524 to 2,202,814 _2103 HP15_2104: HP15_2104 - putative RNA 2'-O-ribose methyltransferase, at 2,202,811 to 2,203,887 _2104 Position (kb) 2200 2201 2202 2203Strain fitness (log2 ratio) -3 -2 -1 0 1at 2199.373 kb on + strand, within HP15_2099at 2199.373 kb on + strand, within HP15_2099at 2199.409 kb on + strand, within HP15_2099at 2199.409 kb on + strand, within HP15_2099at 2199.429 kb on + strandat 2199.429 kb on - strandat 2199.538 kb on - strandat 2199.577 kb on + strandat 2199.703 kb on - strand, within HP15_2100at 2199.751 kb on - strand, within HP15_2100at 2199.829 kb on + strand, within HP15_2100at 2199.884 kb on + strand, within HP15_2100at 2199.894 kb on + strand, within HP15_2100at 2200.032 kb on + strand, within HP15_2100at 2200.064 kb on - strandat 2200.202 kb on - strandat 2200.258 kb on - strandat 2200.467 kb on + strandat 2200.539 kb on - strand, within HP15_2101at 2200.922 kb on - strand, within HP15_2101at 2201.317 kb on + strand, within HP15_2101at 2201.388 kb on - strand, within HP15_2101at 2201.557 kb on - strand, within HP15_2101at 2201.891 kb on - strand, within HP15_2101at 2202.499 kb on - strandat 2202.572 kb on + strand, within HP15_2103at 2202.604 kb on - strand, within HP15_2103at 2202.672 kb on + strand, within HP15_2103at 2202.877 kb on - strandat 2202.993 kb on + strand, within HP15_2104at 2203.001 kb on - strand, within HP15_2104at 2203.002 kb on - strand, within HP15_2104at 2203.098 kb on - strand, within HP15_2104at 2203.122 kb on + strand, within HP15_2104at 2203.130 kb on - strand, within HP15_2104

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
remove
2,199,373 + HP15_2099 0.87 +0.3
2,199,373 + HP15_2099 0.87 -0.3
2,199,409 + HP15_2099 0.90 +0.8
2,199,409 + HP15_2099 0.90 +0.3
2,199,429 + -0.1
2,199,429 - +0.6
2,199,538 - +0.8
2,199,577 + -1.1
2,199,703 - HP15_2100 0.28 +0.2
2,199,751 - HP15_2100 0.36 +0.8
2,199,829 + HP15_2100 0.50 +0.2
2,199,884 + HP15_2100 0.60 +1.3
2,199,894 + HP15_2100 0.62 +0.4
2,200,032 + HP15_2100 0.87 -0.3
2,200,064 - +1.6
2,200,202 - +0.9
2,200,258 - +0.5
2,200,467 + -1.1
2,200,539 - HP15_2101 0.13 -2.3
2,200,922 - HP15_2101 0.33 -1.8
2,201,317 + HP15_2101 0.54 -0.5
2,201,388 - HP15_2101 0.58 -3.5
2,201,557 - HP15_2101 0.67 -1.5
2,201,891 - HP15_2101 0.84 -1.0
2,202,499 - -0.4
2,202,572 + HP15_2103 0.16 -0.3
2,202,604 - HP15_2103 0.27 +0.7
2,202,672 + HP15_2103 0.51 -1.3
2,202,877 - +0.6
2,202,993 + HP15_2104 0.17 +0.4
2,203,001 - HP15_2104 0.18 -0.3
2,203,002 - HP15_2104 0.18 +0.6
2,203,098 - HP15_2104 0.27 -0.0
2,203,122 + HP15_2104 0.29 -0.0
2,203,130 - HP15_2104 0.30 +0.0

Or see this region's nucleotide sequence