Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2099 and HP15_2100 are separated by 6 nucleotides HP15_2100 and HP15_2101 are separated by 187 nucleotides HP15_2101 and HP15_2102 are separated by 11 nucleotides HP15_2102 and HP15_2103 are separated by 86 nucleotides HP15_2103 and HP15_2104 overlap by 4 nucleotides
HP15_2099: HP15_2099 - DEAD/DEAH box helicase domain protein, at 2,198,259 to 2,199,542
_2099
HP15_2100: HP15_2100 - transporting ATPase, at 2,199,549 to 2,200,103
_2100
HP15_2101: HP15_2101 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 2,200,291 to 2,202,186
_2101
HP15_2102: HP15_2102 - SirA family protein, at 2,202,198 to 2,202,437
_2102
HP15_2103: HP15_2103 - antibiotic biosynthesis monooxygenase, at 2,202,524 to 2,202,814
_2103
HP15_2104: HP15_2104 - putative RNA 2'-O-ribose methyltransferase, at 2,202,811 to 2,203,887
_2104
Position (kb)
2200
2201
2202
2203 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2199.373 kb on + strand, within HP15_2099 at 2199.373 kb on + strand, within HP15_2099 at 2199.409 kb on + strand, within HP15_2099 at 2199.409 kb on + strand, within HP15_2099 at 2199.429 kb on + strand at 2199.429 kb on - strand at 2199.538 kb on - strand at 2199.577 kb on + strand at 2199.703 kb on - strand, within HP15_2100 at 2199.751 kb on - strand, within HP15_2100 at 2199.829 kb on + strand, within HP15_2100 at 2199.884 kb on + strand, within HP15_2100 at 2199.894 kb on + strand, within HP15_2100 at 2200.032 kb on + strand, within HP15_2100 at 2200.064 kb on - strand at 2200.202 kb on - strand at 2200.258 kb on - strand at 2200.467 kb on + strand at 2200.539 kb on - strand, within HP15_2101 at 2200.922 kb on - strand, within HP15_2101 at 2201.317 kb on + strand, within HP15_2101 at 2201.388 kb on - strand, within HP15_2101 at 2201.557 kb on - strand, within HP15_2101 at 2201.891 kb on - strand, within HP15_2101 at 2202.499 kb on - strand at 2202.572 kb on + strand, within HP15_2103 at 2202.604 kb on - strand, within HP15_2103 at 2202.672 kb on + strand, within HP15_2103 at 2202.877 kb on - strand at 2202.993 kb on + strand, within HP15_2104 at 2203.001 kb on - strand, within HP15_2104 at 2203.002 kb on - strand, within HP15_2104 at 2203.098 kb on - strand, within HP15_2104 at 2203.122 kb on + strand, within HP15_2104 at 2203.130 kb on - strand, within HP15_2104
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,199,373 + HP15_2099 0.87 +0.3 2,199,373 + HP15_2099 0.87 -0.3 2,199,409 + HP15_2099 0.90 +0.8 2,199,409 + HP15_2099 0.90 +0.3 2,199,429 + -0.1 2,199,429 - +0.6 2,199,538 - +0.8 2,199,577 + -1.1 2,199,703 - HP15_2100 0.28 +0.2 2,199,751 - HP15_2100 0.36 +0.8 2,199,829 + HP15_2100 0.50 +0.2 2,199,884 + HP15_2100 0.60 +1.3 2,199,894 + HP15_2100 0.62 +0.4 2,200,032 + HP15_2100 0.87 -0.3 2,200,064 - +1.6 2,200,202 - +0.9 2,200,258 - +0.5 2,200,467 + -1.1 2,200,539 - HP15_2101 0.13 -2.3 2,200,922 - HP15_2101 0.33 -1.8 2,201,317 + HP15_2101 0.54 -0.5 2,201,388 - HP15_2101 0.58 -3.5 2,201,557 - HP15_2101 0.67 -1.5 2,201,891 - HP15_2101 0.84 -1.0 2,202,499 - -0.4 2,202,572 + HP15_2103 0.16 -0.3 2,202,604 - HP15_2103 0.27 +0.7 2,202,672 + HP15_2103 0.51 -1.3 2,202,877 - +0.6 2,202,993 + HP15_2104 0.17 +0.4 2,203,001 - HP15_2104 0.18 -0.3 2,203,002 - HP15_2104 0.18 +0.6 2,203,098 - HP15_2104 0.27 -0.0 2,203,122 + HP15_2104 0.29 -0.0 2,203,130 - HP15_2104 0.30 +0.0
Or see this region's nucleotide sequence