Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1927 and HP15_1928 are separated by 28 nucleotides HP15_1928 and HP15_1929 are separated by 33 nucleotides
HP15_1927: HP15_1927 - AAA ATPase, at 2,043,797 to 2,044,846
_1927
HP15_1928: HP15_1928 - 2-methylcitrate dehydratase PrpD, at 2,044,875 to 2,046,359
_1928
HP15_1929: HP15_1929 - AcnD-accessory protein PrpF, at 2,046,393 to 2,047,532
_1929
Position (kb)
2044
2045
2046
2047 Strain fitness (log2 ratio)
-1
0
1 at 2044.002 kb on - strand, within HP15_1927 at 2044.013 kb on - strand, within HP15_1927 at 2044.058 kb on + strand, within HP15_1927 at 2044.067 kb on - strand, within HP15_1927 at 2044.117 kb on - strand, within HP15_1927 at 2044.229 kb on - strand, within HP15_1927 at 2044.274 kb on - strand, within HP15_1927 at 2044.292 kb on - strand, within HP15_1927 at 2044.359 kb on + strand, within HP15_1927 at 2044.377 kb on + strand, within HP15_1927 at 2044.438 kb on + strand, within HP15_1927 at 2044.659 kb on + strand, within HP15_1927 at 2044.677 kb on - strand, within HP15_1927 at 2044.865 kb on + strand at 2044.880 kb on - strand at 2045.230 kb on + strand, within HP15_1928 at 2045.736 kb on - strand, within HP15_1928 at 2045.760 kb on + strand, within HP15_1928 at 2045.913 kb on - strand, within HP15_1928 at 2045.960 kb on - strand, within HP15_1928 at 2046.094 kb on + strand, within HP15_1928 at 2046.104 kb on + strand, within HP15_1928 at 2046.188 kb on + strand, within HP15_1928 at 2046.212 kb on - strand at 2046.214 kb on + strand at 2046.252 kb on + strand at 2046.252 kb on + strand at 2046.260 kb on - strand at 2046.260 kb on - strand at 2046.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 2,044,002 - HP15_1927 0.20 -0.3 2,044,013 - HP15_1927 0.21 +1.2 2,044,058 + HP15_1927 0.25 -0.2 2,044,067 - HP15_1927 0.26 -0.8 2,044,117 - HP15_1927 0.30 -0.4 2,044,229 - HP15_1927 0.41 +0.6 2,044,274 - HP15_1927 0.45 -0.0 2,044,292 - HP15_1927 0.47 -0.7 2,044,359 + HP15_1927 0.54 +0.0 2,044,377 + HP15_1927 0.55 -0.1 2,044,438 + HP15_1927 0.61 +0.3 2,044,659 + HP15_1927 0.82 +0.5 2,044,677 - HP15_1927 0.84 -0.1 2,044,865 + -0.7 2,044,880 - -0.1 2,045,230 + HP15_1928 0.24 +0.9 2,045,736 - HP15_1928 0.58 -0.3 2,045,760 + HP15_1928 0.60 +0.5 2,045,913 - HP15_1928 0.70 +0.1 2,045,960 - HP15_1928 0.73 +0.6 2,046,094 + HP15_1928 0.82 +0.9 2,046,104 + HP15_1928 0.83 +0.7 2,046,188 + HP15_1928 0.88 +0.7 2,046,212 - +1.2 2,046,214 + +0.2 2,046,252 + +0.7 2,046,252 + +0.3 2,046,260 - -1.1 2,046,260 - -0.1 2,046,413 - +0.7
Or see this region's nucleotide sequence