Strain Fitness in Marinobacter adhaerens HP15 around HP15_1778

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1776 and HP15_1777 are separated by 18 nucleotidesHP15_1777 and HP15_1778 are separated by 9 nucleotidesHP15_1778 and HP15_1779 are separated by 346 nucleotidesHP15_1779 and HP15_1780 are separated by 4 nucleotides HP15_1776: HP15_1776 - exonuclease III, at 1,872,890 to 1,873,702 _1776 HP15_1777: HP15_1777 - transcriptional regulator, TetR family, at 1,873,721 to 1,874,350 _1777 HP15_1778: HP15_1778 - poly(hydroxyalkanoate) granule-associated protein, at 1,874,360 to 1,874,773 _1778 HP15_1779: HP15_1779 - protein of unknown function, YeeE/YedE, at 1,875,120 to 1,875,557 _1779 HP15_1780: HP15_1780 - protein of unknown function, YeeE/YedE, at 1,875,562 to 1,875,987 _1780 Position (kb) 1874 1875Strain fitness (log2 ratio) -1 0 1at 1873.532 kb on - strand, within HP15_1776at 1873.558 kb on + strand, within HP15_1776at 1873.580 kb on + strand, within HP15_1776at 1873.600 kb on - strand, within HP15_1776at 1873.631 kb on - strandat 1873.771 kb on + strandat 1873.779 kb on - strandat 1873.886 kb on + strand, within HP15_1777at 1874.262 kb on + strand, within HP15_1777at 1874.290 kb on + strandat 1874.295 kb on + strandat 1874.622 kb on - strand, within HP15_1778at 1874.699 kb on - strand, within HP15_1778at 1874.853 kb on - strandat 1874.874 kb on + strandat 1874.882 kb on - strandat 1874.882 kb on - strandat 1875.159 kb on + strandat 1875.352 kb on - strand, within HP15_1779at 1875.391 kb on - strand, within HP15_1779at 1875.441 kb on + strand, within HP15_1779at 1875.500 kb on - strand, within HP15_1779at 1875.611 kb on + strand, within HP15_1780at 1875.731 kb on + strand, within HP15_1780

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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1,873,532 - HP15_1776 0.79 +0.4
1,873,558 + HP15_1776 0.82 +1.0
1,873,580 + HP15_1776 0.85 +0.2
1,873,600 - HP15_1776 0.87 -1.5
1,873,631 - +0.6
1,873,771 + +1.1
1,873,779 - -0.1
1,873,886 + HP15_1777 0.26 -0.1
1,874,262 + HP15_1777 0.86 +0.6
1,874,290 + -1.7
1,874,295 + +0.0
1,874,622 - HP15_1778 0.63 -0.4
1,874,699 - HP15_1778 0.82 -0.5
1,874,853 - +0.3
1,874,874 + +0.1
1,874,882 - +0.3
1,874,882 - -0.6
1,875,159 + +1.3
1,875,352 - HP15_1779 0.53 +0.5
1,875,391 - HP15_1779 0.62 -0.2
1,875,441 + HP15_1779 0.73 +0.3
1,875,500 - HP15_1779 0.87 -0.5
1,875,611 + HP15_1780 0.12 -0.6
1,875,731 + HP15_1780 0.40 +0.6

Or see this region's nucleotide sequence