Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1764 and HP15_1765 are separated by 380 nucleotides HP15_1765 and HP15_1766 overlap by 11 nucleotides
HP15_1764: HP15_1764 - two-component response regulator, at 1,861,984 to 1,862,925
_1764
HP15_1765: HP15_1765 - HD superfamily phosphohydrolase, at 1,863,306 to 1,864,790
_1765
HP15_1766: HP15_1766 - FAD dependent oxidoreductase, at 1,864,780 to 1,865,808
_1766
Position (kb)
1863
1864
1865 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1862.312 kb on - strand, within HP15_1764 at 1862.422 kb on - strand, within HP15_1764 at 1862.551 kb on - strand, within HP15_1764 at 1862.573 kb on + strand, within HP15_1764 at 1862.578 kb on + strand, within HP15_1764 at 1862.680 kb on - strand, within HP15_1764 at 1862.730 kb on + strand, within HP15_1764 at 1862.778 kb on + strand, within HP15_1764 at 1862.928 kb on - strand at 1863.175 kb on - strand at 1863.207 kb on - strand at 1863.256 kb on + strand at 1863.374 kb on - strand at 1863.427 kb on - strand at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.502 kb on + strand, within HP15_1765 at 1863.510 kb on - strand, within HP15_1765 at 1863.510 kb on - strand, within HP15_1765 at 1863.510 kb on - strand, within HP15_1765 at 1863.528 kb on + strand, within HP15_1765 at 1863.564 kb on - strand, within HP15_1765 at 1863.589 kb on + strand, within HP15_1765 at 1863.595 kb on + strand, within HP15_1765 at 1863.597 kb on - strand, within HP15_1765 at 1863.597 kb on - strand, within HP15_1765 at 1863.778 kb on + strand, within HP15_1765 at 1863.778 kb on + strand, within HP15_1765 at 1863.870 kb on - strand, within HP15_1765 at 1864.128 kb on - strand, within HP15_1765 at 1864.167 kb on - strand, within HP15_1765 at 1864.268 kb on - strand, within HP15_1765 at 1864.328 kb on - strand, within HP15_1765 at 1864.339 kb on + strand, within HP15_1765 at 1864.350 kb on + strand, within HP15_1765 at 1864.572 kb on - strand, within HP15_1765 at 1864.572 kb on - strand, within HP15_1765 at 1864.630 kb on + strand, within HP15_1765 at 1864.691 kb on + strand at 1864.785 kb on + strand at 1865.132 kb on + strand, within HP15_1766 at 1865.132 kb on + strand, within HP15_1766 at 1865.132 kb on + strand, within HP15_1766 at 1865.218 kb on - strand, within HP15_1766 at 1865.366 kb on + strand, within HP15_1766 at 1865.434 kb on - strand, within HP15_1766 at 1865.436 kb on + strand, within HP15_1766 at 1865.552 kb on - strand, within HP15_1766 at 1865.552 kb on - strand, within HP15_1766 at 1865.606 kb on + strand, within HP15_1766 at 1865.673 kb on + strand, within HP15_1766 at 1865.706 kb on + strand at 1865.747 kb on - strand at 1865.756 kb on - strand at 1865.756 kb on - strand at 1865.773 kb on + strand at 1865.787 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,862,312 - HP15_1764 0.35 -0.1 1,862,422 - HP15_1764 0.46 -0.1 1,862,551 - HP15_1764 0.60 +0.2 1,862,573 + HP15_1764 0.63 -0.7 1,862,578 + HP15_1764 0.63 -0.7 1,862,680 - HP15_1764 0.74 -1.4 1,862,730 + HP15_1764 0.79 +0.6 1,862,778 + HP15_1764 0.84 -0.0 1,862,928 - -1.5 1,863,175 - +0.2 1,863,207 - +0.4 1,863,256 + -1.6 1,863,374 - -0.2 1,863,427 - -0.0 1,863,502 + HP15_1765 0.13 -0.5 1,863,502 + HP15_1765 0.13 -0.5 1,863,502 + HP15_1765 0.13 -0.9 1,863,502 + HP15_1765 0.13 -0.8 1,863,502 + HP15_1765 0.13 -1.1 1,863,502 + HP15_1765 0.13 -0.7 1,863,510 - HP15_1765 0.14 +0.4 1,863,510 - HP15_1765 0.14 -0.3 1,863,510 - HP15_1765 0.14 -0.9 1,863,528 + HP15_1765 0.15 -1.5 1,863,564 - HP15_1765 0.17 -0.5 1,863,589 + HP15_1765 0.19 -1.9 1,863,595 + HP15_1765 0.19 -0.4 1,863,597 - HP15_1765 0.20 -0.4 1,863,597 - HP15_1765 0.20 -0.7 1,863,778 + HP15_1765 0.32 -1.0 1,863,778 + HP15_1765 0.32 +2.2 1,863,870 - HP15_1765 0.38 -0.1 1,864,128 - HP15_1765 0.55 -1.4 1,864,167 - HP15_1765 0.58 -0.5 1,864,268 - HP15_1765 0.65 -0.1 1,864,328 - HP15_1765 0.69 -0.5 1,864,339 + HP15_1765 0.70 -0.2 1,864,350 + HP15_1765 0.70 -0.5 1,864,572 - HP15_1765 0.85 -0.3 1,864,572 - HP15_1765 0.85 -1.4 1,864,630 + HP15_1765 0.89 +0.4 1,864,691 + +0.3 1,864,785 + +0.4 1,865,132 + HP15_1766 0.34 -0.5 1,865,132 + HP15_1766 0.34 +1.2 1,865,132 + HP15_1766 0.34 +0.8 1,865,218 - HP15_1766 0.43 +0.5 1,865,366 + HP15_1766 0.57 +0.8 1,865,434 - HP15_1766 0.64 -0.7 1,865,436 + HP15_1766 0.64 +0.3 1,865,552 - HP15_1766 0.75 -0.1 1,865,552 - HP15_1766 0.75 -0.8 1,865,606 + HP15_1766 0.80 +1.0 1,865,673 + HP15_1766 0.87 +0.7 1,865,706 + -1.4 1,865,747 - +0.2 1,865,756 - +0.5 1,865,756 - -0.1 1,865,773 + -0.7 1,865,787 + -1.8
Or see this region's nucleotide sequence