Strain Fitness in Marinobacter adhaerens HP15 around HP15_1702

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1701 and HP15_1702 are separated by 610 nucleotidesHP15_1702 and HP15_1703 are separated by 26 nucleotidesHP15_1703 and HP15_1704 are separated by 74 nucleotides HP15_1701: HP15_1701 - hypothetical protein, at 1,794,678 to 1,795,841 _1701 HP15_1702: HP15_1702 - protein containing DUF785, at 1,796,452 to 1,797,051 _1702 HP15_1703: HP15_1703 - acyl carrier protein phosphodiesterase, at 1,797,078 to 1,797,602 _1703 HP15_1704: HP15_1704 - conserved hypothetical protein, secreted, at 1,797,677 to 1,798,219 _1704 Position (kb) 1796 1797 1798Strain fitness (log2 ratio) -1 0 1at 1795.488 kb on - strand, within HP15_1701at 1795.757 kb on - strandat 1795.781 kb on - strandat 1795.805 kb on - strandat 1795.820 kb on - strandat 1795.910 kb on + strandat 1795.945 kb on - strandat 1795.956 kb on + strandat 1796.062 kb on + strandat 1796.072 kb on + strandat 1796.081 kb on + strandat 1796.406 kb on - strandat 1796.972 kb on - strand, within HP15_1702at 1796.972 kb on - strand, within HP15_1702at 1797.216 kb on + strand, within HP15_1703at 1797.261 kb on - strand, within HP15_1703at 1797.465 kb on - strand, within HP15_1703at 1797.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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1,795,488 - HP15_1701 0.70 -0.5
1,795,757 - +0.3
1,795,781 - +1.2
1,795,805 - -1.0
1,795,820 - +0.3
1,795,910 + +0.4
1,795,945 - -0.9
1,795,956 + +0.4
1,796,062 + +0.4
1,796,072 + -1.1
1,796,081 + -0.5
1,796,406 - -0.7
1,796,972 - HP15_1702 0.87 -0.5
1,796,972 - HP15_1702 0.87 -0.4
1,797,216 + HP15_1703 0.26 -1.0
1,797,261 - HP15_1703 0.35 +0.6
1,797,465 - HP15_1703 0.74 +0.3
1,797,614 - +0.2

Or see this region's nucleotide sequence