Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1478 and HP15_1479 are separated by 14 nucleotides HP15_1479 and HP15_1480 are separated by 29 nucleotides HP15_1480 and HP15_1481 are separated by 95 nucleotides
HP15_1478: HP15_1478 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,554,087 to 1,555,190
_1478
HP15_1479: HP15_1479 - queuine tRNA-ribosyltransferase, at 1,555,205 to 1,556,326
_1479
HP15_1480: HP15_1480 - preprotein translocase, YajC subunit, at 1,556,356 to 1,556,718
_1480
HP15_1481: HP15_1481 - preprotein translocase subunit SecD, at 1,556,814 to 1,558,688
_1481
Position (kb)
1555
1556
1557 Strain fitness (log2 ratio)
-2
-1
0
1 at 1554.223 kb on + strand, within HP15_1478 at 1554.272 kb on + strand, within HP15_1478 at 1554.458 kb on + strand, within HP15_1478 at 1554.483 kb on - strand, within HP15_1478 at 1554.498 kb on - strand, within HP15_1478 at 1554.578 kb on - strand, within HP15_1478 at 1554.768 kb on - strand, within HP15_1478 at 1555.282 kb on - strand at 1555.282 kb on - strand at 1555.305 kb on + strand at 1555.315 kb on + strand at 1555.385 kb on - strand, within HP15_1479 at 1555.385 kb on - strand, within HP15_1479 at 1555.401 kb on + strand, within HP15_1479 at 1555.409 kb on - strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.455 kb on + strand, within HP15_1479 at 1555.460 kb on + strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.463 kb on - strand, within HP15_1479 at 1555.931 kb on + strand, within HP15_1479 at 1556.000 kb on - strand, within HP15_1479 at 1556.071 kb on - strand, within HP15_1479 at 1556.278 kb on + strand at 1556.278 kb on + strand at 1556.556 kb on + strand, within HP15_1480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,554,223 + HP15_1478 0.12 -0.4 1,554,272 + HP15_1478 0.17 +0.4 1,554,458 + HP15_1478 0.34 +0.3 1,554,483 - HP15_1478 0.36 -0.5 1,554,498 - HP15_1478 0.37 +1.2 1,554,578 - HP15_1478 0.44 -0.4 1,554,768 - HP15_1478 0.62 -0.4 1,555,282 - +0.0 1,555,282 - +0.2 1,555,305 + -0.1 1,555,315 + -1.0 1,555,385 - HP15_1479 0.16 -0.6 1,555,385 - HP15_1479 0.16 +0.8 1,555,401 + HP15_1479 0.17 -0.1 1,555,409 - HP15_1479 0.18 -0.1 1,555,455 + HP15_1479 0.22 -1.4 1,555,455 + HP15_1479 0.22 +0.3 1,555,455 + HP15_1479 0.22 -0.7 1,555,460 + HP15_1479 0.23 +0.2 1,555,463 - HP15_1479 0.23 -0.8 1,555,463 - HP15_1479 0.23 +0.2 1,555,463 - HP15_1479 0.23 -1.7 1,555,463 - HP15_1479 0.23 -1.0 1,555,931 + HP15_1479 0.65 -1.7 1,556,000 - HP15_1479 0.71 -1.9 1,556,071 - HP15_1479 0.77 -1.2 1,556,278 + -0.7 1,556,278 + -0.5 1,556,556 + HP15_1480 0.55 -0.7
Or see this region's nucleotide sequence