Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1453 and HP15_1454 are separated by 132 nucleotides HP15_1454 and HP15_1455 are separated by 5 nucleotides HP15_1455 and HP15_1456 are separated by 230 nucleotides
HP15_1453: HP15_1453 - long-chain acyl-CoA synthetase, at 1,528,203 to 1,529,840
_1453
HP15_1454: HP15_1454 - thioesterase domain protein, at 1,529,973 to 1,530,458
_1454
HP15_1455: HP15_1455 - iron(III) ABC transporter, permease protein, at 1,530,464 to 1,532,077
_1455
HP15_1456: HP15_1456 - extracellular solute-binding protein, family 1, at 1,532,308 to 1,533,318
_1456
Position (kb)
1530
1531
1532
1533 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1529.561 kb on + strand, within HP15_1453 at 1529.668 kb on - strand, within HP15_1453 at 1529.685 kb on + strand at 1529.941 kb on + strand at 1529.949 kb on - strand at 1530.110 kb on + strand, within HP15_1454 at 1530.208 kb on - strand, within HP15_1454 at 1530.236 kb on + strand, within HP15_1454 at 1530.460 kb on - strand at 1530.482 kb on + strand at 1530.579 kb on - strand at 1530.739 kb on + strand, within HP15_1455 at 1530.837 kb on + strand, within HP15_1455 at 1530.870 kb on + strand, within HP15_1455 at 1530.936 kb on - strand at 1530.984 kb on + strand, within HP15_1455 at 1531.287 kb on - strand, within HP15_1455 at 1531.727 kb on - strand, within HP15_1455 at 1531.766 kb on + strand, within HP15_1455 at 1531.767 kb on + strand, within HP15_1455 at 1531.947 kb on + strand at 1532.057 kb on + strand at 1532.057 kb on + strand at 1532.065 kb on - strand at 1532.065 kb on - strand at 1532.262 kb on + strand at 1532.371 kb on + strand at 1532.581 kb on + strand, within HP15_1456 at 1532.711 kb on + strand, within HP15_1456 at 1532.895 kb on + strand, within HP15_1456 at 1532.988 kb on - strand, within HP15_1456
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,529,561 + HP15_1453 0.83 +0.8 1,529,668 - HP15_1453 0.89 +0.4 1,529,685 + -0.0 1,529,941 + +0.1 1,529,949 - +0.6 1,530,110 + HP15_1454 0.28 +0.1 1,530,208 - HP15_1454 0.48 -0.4 1,530,236 + HP15_1454 0.54 +0.8 1,530,460 - +2.2 1,530,482 + -0.8 1,530,579 - -2.5 1,530,739 + HP15_1455 0.17 -1.3 1,530,837 + HP15_1455 0.23 -1.2 1,530,870 + HP15_1455 0.25 -2.0 1,530,936 - +0.6 1,530,984 + HP15_1455 0.32 -2.1 1,531,287 - HP15_1455 0.51 +0.3 1,531,727 - HP15_1455 0.78 +0.6 1,531,766 + HP15_1455 0.81 -0.9 1,531,767 + HP15_1455 0.81 -1.6 1,531,947 + -0.7 1,532,057 + -3.0 1,532,057 + -0.7 1,532,065 - -3.1 1,532,065 - -1.2 1,532,262 + +0.0 1,532,371 + -0.7 1,532,581 + HP15_1456 0.27 -0.8 1,532,711 + HP15_1456 0.40 -1.8 1,532,895 + HP15_1456 0.58 -1.0 1,532,988 - HP15_1456 0.67 -2.2
Or see this region's nucleotide sequence