Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1375 and HP15_1376 are separated by 391 nucleotides HP15_1376 and HP15_1377 are separated by 57 nucleotides HP15_1377 and HP15_1378 are separated by 172 nucleotides HP15_1378 and HP15_1379 are separated by 379 nucleotides
HP15_1375: HP15_1375 - cation diffusion facilitator family transporter, at 1,449,993 to 1,451,151
_1375
HP15_1376: HP15_1376 - hypothetical protein, at 1,451,543 to 1,451,647
_1376
HP15_1377: HP15_1377 - dihydroorotate dehydrogenase, at 1,451,705 to 1,452,580
_1377
HP15_1378: HP15_1378 - ribosome modulation factor, at 1,452,753 to 1,452,944
_1378
HP15_1379: HP15_1379 - RNA methylase, at 1,453,324 to 1,455,459
_1379
Position (kb)
1451
1452
1453 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1450.778 kb on - strand, within HP15_1375 at 1450.780 kb on + strand, within HP15_1375 at 1450.827 kb on - strand, within HP15_1375 at 1450.852 kb on + strand, within HP15_1375 at 1450.860 kb on - strand, within HP15_1375 at 1450.937 kb on - strand, within HP15_1375 at 1451.250 kb on - strand at 1451.752 kb on - strand at 1452.098 kb on - strand, within HP15_1377 at 1452.479 kb on + strand, within HP15_1377 at 1452.603 kb on + strand at 1452.688 kb on + strand at 1452.768 kb on - strand at 1452.991 kb on + strand at 1453.004 kb on - strand at 1453.069 kb on - strand at 1453.069 kb on - strand at 1453.074 kb on - strand at 1453.287 kb on + strand at 1453.397 kb on + strand at 1453.406 kb on + strand at 1453.406 kb on + strand at 1453.414 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,450,778 - HP15_1375 0.68 +0.6 1,450,780 + HP15_1375 0.68 -0.5 1,450,827 - HP15_1375 0.72 -1.4 1,450,852 + HP15_1375 0.74 -0.4 1,450,860 - HP15_1375 0.75 -0.8 1,450,937 - HP15_1375 0.81 -1.5 1,451,250 - -1.1 1,451,752 - -3.4 1,452,098 - HP15_1377 0.45 -2.9 1,452,479 + HP15_1377 0.88 -3.9 1,452,603 + +0.3 1,452,688 + +0.0 1,452,768 - +0.2 1,452,991 + +0.1 1,453,004 - -0.5 1,453,069 - -0.8 1,453,069 - +0.3 1,453,074 - -0.3 1,453,287 + +0.6 1,453,397 + +0.3 1,453,406 + -0.8 1,453,406 + +0.4 1,453,414 - -0.5
Or see this region's nucleotide sequence