Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1281 and HP15_1282 are separated by 210 nucleotides HP15_1282 and HP15_1283 are separated by 206 nucleotides
HP15_1281: HP15_1281 - membrane protein containing DUF368, at 1,341,321 to 1,342,310
_1281
HP15_1282: HP15_1282 - peptidase M23B, at 1,342,521 to 1,343,411
_1282
HP15_1283: HP15_1283 - RNA polymerase, sigma 70 subunit, RpoD family, at 1,343,618 to 1,344,613
_1283
Position (kb)
1342
1343
1344 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1342.276 kb on + strand at 1342.309 kb on + strand at 1342.317 kb on - strand at 1342.342 kb on - strand at 1342.378 kb on - strand at 1342.618 kb on - strand, within HP15_1282 at 1342.766 kb on - strand, within HP15_1282 at 1342.778 kb on - strand, within HP15_1282 at 1342.883 kb on + strand, within HP15_1282 at 1343.024 kb on + strand, within HP15_1282 at 1343.032 kb on - strand, within HP15_1282 at 1343.056 kb on + strand, within HP15_1282 at 1343.179 kb on - strand, within HP15_1282 at 1343.242 kb on + strand, within HP15_1282 at 1343.311 kb on - strand, within HP15_1282 at 1343.431 kb on - strand at 1343.448 kb on + strand at 1343.448 kb on + strand at 1343.448 kb on + strand at 1343.743 kb on - strand, within HP15_1283 at 1343.775 kb on + strand, within HP15_1283 at 1343.775 kb on + strand, within HP15_1283 at 1343.793 kb on + strand, within HP15_1283 at 1343.877 kb on + strand, within HP15_1283 at 1343.924 kb on - strand, within HP15_1283 at 1343.969 kb on + strand, within HP15_1283 at 1343.994 kb on + strand, within HP15_1283 at 1343.994 kb on + strand, within HP15_1283 at 1343.997 kb on - strand, within HP15_1283 at 1344.004 kb on + strand, within HP15_1283 at 1344.012 kb on - strand, within HP15_1283 at 1344.012 kb on - strand, within HP15_1283 at 1344.341 kb on + strand, within HP15_1283 at 1344.390 kb on - strand, within HP15_1283 at 1344.396 kb on + strand, within HP15_1283
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,342,276 + -0.7 1,342,309 + -1.1 1,342,317 - -2.3 1,342,342 - -0.1 1,342,378 - +0.2 1,342,618 - HP15_1282 0.11 +0.5 1,342,766 - HP15_1282 0.27 -3.5 1,342,778 - HP15_1282 0.29 -3.2 1,342,883 + HP15_1282 0.41 -3.6 1,343,024 + HP15_1282 0.56 -3.8 1,343,032 - HP15_1282 0.57 -2.1 1,343,056 + HP15_1282 0.60 -3.4 1,343,179 - HP15_1282 0.74 -2.5 1,343,242 + HP15_1282 0.81 -3.1 1,343,311 - HP15_1282 0.89 -3.5 1,343,431 - +0.7 1,343,448 + -0.3 1,343,448 + -0.7 1,343,448 + -0.9 1,343,743 - HP15_1283 0.13 +0.4 1,343,775 + HP15_1283 0.16 -0.1 1,343,775 + HP15_1283 0.16 +0.2 1,343,793 + HP15_1283 0.18 -0.1 1,343,877 + HP15_1283 0.26 +0.4 1,343,924 - HP15_1283 0.31 +0.4 1,343,969 + HP15_1283 0.35 -0.1 1,343,994 + HP15_1283 0.38 -0.4 1,343,994 + HP15_1283 0.38 +0.4 1,343,997 - HP15_1283 0.38 -0.5 1,344,004 + HP15_1283 0.39 -0.1 1,344,012 - HP15_1283 0.40 -0.0 1,344,012 - HP15_1283 0.40 -0.3 1,344,341 + HP15_1283 0.73 +0.8 1,344,390 - HP15_1283 0.78 -0.1 1,344,396 + HP15_1283 0.78 -0.4
Or see this region's nucleotide sequence