Strain Fitness in Marinobacter adhaerens HP15 around HP15_1228

Experiment: m.b. 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1226 and HP15_1227 overlap by 11 nucleotidesHP15_1227 and HP15_1228 are separated by 11 nucleotidesHP15_1228 and HP15_1229 are separated by 112 nucleotides HP15_1226: HP15_1226 - 2-phosphoglycolate phosphatase, prokaryotic, at 1,274,540 to 1,275,211 _1226 HP15_1227: HP15_1227 - 3-demethylubiquinone-9 3-methyltransferase, at 1,275,201 to 1,275,941 _1227 HP15_1228: HP15_1228 - chlorohydrolase/deaminase family protein, at 1,275,953 to 1,277,290 _1228 HP15_1229: HP15_1229 - translation initiation factor, aIF-2BI family, at 1,277,403 to 1,278,467 _1229 Position (kb) 1275 1276 1277 1278Strain fitness (log2 ratio) -2 -1 0 1at 1275.206 kb on - strandat 1275.916 kb on - strandat 1275.936 kb on - strandat 1275.984 kb on - strandat 1276.158 kb on - strand, within HP15_1228at 1276.158 kb on - strand, within HP15_1228at 1276.311 kb on + strand, within HP15_1228at 1276.396 kb on + strand, within HP15_1228at 1276.405 kb on - strand, within HP15_1228at 1276.416 kb on - strand, within HP15_1228at 1276.700 kb on - strand, within HP15_1228at 1276.700 kb on - strand, within HP15_1228at 1276.827 kb on - strand, within HP15_1228at 1277.048 kb on - strand, within HP15_1228at 1277.048 kb on - strand, within HP15_1228at 1277.081 kb on - strand, within HP15_1228at 1277.153 kb on - strand, within HP15_1228at 1277.241 kb on - strandat 1277.321 kb on - strandat 1277.350 kb on + strandat 1277.370 kb on + strandat 1277.414 kb on + strandat 1277.473 kb on + strandat 1277.473 kb on + strandat 1277.473 kb on + strandat 1277.481 kb on - strandat 1277.526 kb on - strand, within HP15_1229at 1277.554 kb on + strand, within HP15_1229at 1277.570 kb on + strand, within HP15_1229at 1277.646 kb on + strand, within HP15_1229at 1277.864 kb on - strand, within HP15_1229at 1277.932 kb on + strand, within HP15_1229at 1277.966 kb on + strand, within HP15_1229at 1277.992 kb on - strand, within HP15_1229at 1278.010 kb on + strand, within HP15_1229at 1278.018 kb on - strand, within HP15_1229at 1278.019 kb on - strand, within HP15_1229at 1278.034 kb on + strand, within HP15_1229at 1278.068 kb on - strand, within HP15_1229at 1278.203 kb on - strand, within HP15_1229at 1278.237 kb on + strand, within HP15_1229

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 30C
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1,275,206 - -0.8
1,275,916 - -0.5
1,275,936 - -0.6
1,275,984 - -0.1
1,276,158 - HP15_1228 0.15 -0.2
1,276,158 - HP15_1228 0.15 +0.7
1,276,311 + HP15_1228 0.27 -0.5
1,276,396 + HP15_1228 0.33 -1.8
1,276,405 - HP15_1228 0.34 -1.4
1,276,416 - HP15_1228 0.35 -0.3
1,276,700 - HP15_1228 0.56 -0.7
1,276,700 - HP15_1228 0.56 -0.8
1,276,827 - HP15_1228 0.65 -0.4
1,277,048 - HP15_1228 0.82 -0.4
1,277,048 - HP15_1228 0.82 +0.5
1,277,081 - HP15_1228 0.84 -0.5
1,277,153 - HP15_1228 0.90 -0.6
1,277,241 - +0.8
1,277,321 - -0.3
1,277,350 + -0.6
1,277,370 + -0.1
1,277,414 + +0.4
1,277,473 + -0.4
1,277,473 + -1.7
1,277,473 + -0.0
1,277,481 - -0.3
1,277,526 - HP15_1229 0.12 -0.5
1,277,554 + HP15_1229 0.14 +1.0
1,277,570 + HP15_1229 0.16 -1.1
1,277,646 + HP15_1229 0.23 +0.3
1,277,864 - HP15_1229 0.43 +1.7
1,277,932 + HP15_1229 0.50 -0.2
1,277,966 + HP15_1229 0.53 -0.0
1,277,992 - HP15_1229 0.55 +0.6
1,278,010 + HP15_1229 0.57 +0.4
1,278,018 - HP15_1229 0.58 +0.1
1,278,019 - HP15_1229 0.58 +0.1
1,278,034 + HP15_1229 0.59 -0.5
1,278,068 - HP15_1229 0.62 +0.4
1,278,203 - HP15_1229 0.75 +0.2
1,278,237 + HP15_1229 0.78 +0.5

Or see this region's nucleotide sequence