Experiment: m.b. 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1226 and HP15_1227 overlap by 11 nucleotides HP15_1227 and HP15_1228 are separated by 11 nucleotides HP15_1228 and HP15_1229 are separated by 112 nucleotides
HP15_1226: HP15_1226 - 2-phosphoglycolate phosphatase, prokaryotic, at 1,274,540 to 1,275,211
_1226
HP15_1227: HP15_1227 - 3-demethylubiquinone-9 3-methyltransferase, at 1,275,201 to 1,275,941
_1227
HP15_1228: HP15_1228 - chlorohydrolase/deaminase family protein, at 1,275,953 to 1,277,290
_1228
HP15_1229: HP15_1229 - translation initiation factor, aIF-2BI family, at 1,277,403 to 1,278,467
_1229
Position (kb)
1275
1276
1277
1278 Strain fitness (log2 ratio)
-2
-1
0
1 at 1275.206 kb on - strand at 1275.916 kb on - strand at 1275.936 kb on - strand at 1275.984 kb on - strand at 1276.158 kb on - strand, within HP15_1228 at 1276.158 kb on - strand, within HP15_1228 at 1276.311 kb on + strand, within HP15_1228 at 1276.396 kb on + strand, within HP15_1228 at 1276.405 kb on - strand, within HP15_1228 at 1276.416 kb on - strand, within HP15_1228 at 1276.700 kb on - strand, within HP15_1228 at 1276.700 kb on - strand, within HP15_1228 at 1276.827 kb on - strand, within HP15_1228 at 1277.048 kb on - strand, within HP15_1228 at 1277.048 kb on - strand, within HP15_1228 at 1277.081 kb on - strand, within HP15_1228 at 1277.153 kb on - strand, within HP15_1228 at 1277.241 kb on - strand at 1277.321 kb on - strand at 1277.350 kb on + strand at 1277.370 kb on + strand at 1277.414 kb on + strand at 1277.473 kb on + strand at 1277.473 kb on + strand at 1277.473 kb on + strand at 1277.481 kb on - strand at 1277.526 kb on - strand, within HP15_1229 at 1277.554 kb on + strand, within HP15_1229 at 1277.570 kb on + strand, within HP15_1229 at 1277.646 kb on + strand, within HP15_1229 at 1277.864 kb on - strand, within HP15_1229 at 1277.932 kb on + strand, within HP15_1229 at 1277.966 kb on + strand, within HP15_1229 at 1277.992 kb on - strand, within HP15_1229 at 1278.010 kb on + strand, within HP15_1229 at 1278.018 kb on - strand, within HP15_1229 at 1278.019 kb on - strand, within HP15_1229 at 1278.034 kb on + strand, within HP15_1229 at 1278.068 kb on - strand, within HP15_1229 at 1278.203 kb on - strand, within HP15_1229 at 1278.237 kb on + strand, within HP15_1229
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 30C remove 1,275,206 - -0.8 1,275,916 - -0.5 1,275,936 - -0.6 1,275,984 - -0.1 1,276,158 - HP15_1228 0.15 -0.2 1,276,158 - HP15_1228 0.15 +0.7 1,276,311 + HP15_1228 0.27 -0.5 1,276,396 + HP15_1228 0.33 -1.8 1,276,405 - HP15_1228 0.34 -1.4 1,276,416 - HP15_1228 0.35 -0.3 1,276,700 - HP15_1228 0.56 -0.7 1,276,700 - HP15_1228 0.56 -0.8 1,276,827 - HP15_1228 0.65 -0.4 1,277,048 - HP15_1228 0.82 -0.4 1,277,048 - HP15_1228 0.82 +0.5 1,277,081 - HP15_1228 0.84 -0.5 1,277,153 - HP15_1228 0.90 -0.6 1,277,241 - +0.8 1,277,321 - -0.3 1,277,350 + -0.6 1,277,370 + -0.1 1,277,414 + +0.4 1,277,473 + -0.4 1,277,473 + -1.7 1,277,473 + -0.0 1,277,481 - -0.3 1,277,526 - HP15_1229 0.12 -0.5 1,277,554 + HP15_1229 0.14 +1.0 1,277,570 + HP15_1229 0.16 -1.1 1,277,646 + HP15_1229 0.23 +0.3 1,277,864 - HP15_1229 0.43 +1.7 1,277,932 + HP15_1229 0.50 -0.2 1,277,966 + HP15_1229 0.53 -0.0 1,277,992 - HP15_1229 0.55 +0.6 1,278,010 + HP15_1229 0.57 +0.4 1,278,018 - HP15_1229 0.58 +0.1 1,278,019 - HP15_1229 0.58 +0.1 1,278,034 + HP15_1229 0.59 -0.5 1,278,068 - HP15_1229 0.62 +0.4 1,278,203 - HP15_1229 0.75 +0.2 1,278,237 + HP15_1229 0.78 +0.5
Or see this region's nucleotide sequence