Strain Fitness in Shewanella oneidensis MR-1 around SO1724

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1723 and SO1724 are separated by 59 nucleotidesSO1724 and pstB-1 are separated by 57 nucleotidespstB-1 and phoU are separated by 131 nucleotides SO1723: SO1723 - phosphate ABC transporter, permease protein, putative (NCBI ptt file), at 1,808,420 to 1,810,636 SO1723 SO1724: SO1724 - phosphate ABC transporter, permease protein, putative (NCBI ptt file), at 1,810,696 to 1,812,354 SO1724 SO1725: pstB-1 - phosphate ABC transporter, ATP-binding protein (NCBI ptt file), at 1,812,412 to 1,813,206 pstB-1 SO1726: phoU - phosphate transport system regulatory protein PhoU (NCBI ptt file), at 1,813,338 to 1,814,048 phoU Position (kb) 1810 1811 1812 1813Strain fitness (log2 ratio) -2 -1 0 1at 1809.803 kb on + strand, within SO1723at 1809.816 kb on + strand, within SO1723at 1809.863 kb on + strand, within SO1723at 1810.110 kb on + strand, within SO1723at 1810.371 kb on + strand, within SO1723at 1810.376 kb on + strand, within SO1723at 1810.443 kb on + strandat 1810.631 kb on + strandat 1810.882 kb on + strand, within SO1724at 1810.980 kb on + strand, within SO1724at 1811.051 kb on + strand, within SO1724at 1811.051 kb on + strand, within SO1724at 1811.174 kb on + strand, within SO1724at 1811.219 kb on + strand, within SO1724at 1811.353 kb on + strand, within SO1724at 1811.881 kb on + strand, within SO1724at 1811.977 kb on + strand, within SO1724at 1811.994 kb on + strand, within SO1724at 1811.994 kb on + strand, within SO1724at 1812.039 kb on + strand, within SO1724at 1812.286 kb on + strandat 1812.291 kb on + strandat 1812.302 kb on + strandat 1812.302 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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1,809,803 + SO1723 0.62 +0.5
1,809,816 + SO1723 0.63 -1.3
1,809,863 + SO1723 0.65 -0.7
1,810,110 + SO1723 0.76 -0.0
1,810,371 + SO1723 0.88 -0.4
1,810,376 + SO1723 0.88 -0.3
1,810,443 + +0.5
1,810,631 + -0.3
1,810,882 + SO1724 0.11 -0.4
1,810,980 + SO1724 0.17 -1.2
1,811,051 + SO1724 0.21 -0.7
1,811,051 + SO1724 0.21 -0.5
1,811,174 + SO1724 0.29 -1.1
1,811,219 + SO1724 0.32 -2.0
1,811,353 + SO1724 0.40 -0.5
1,811,881 + SO1724 0.71 -0.4
1,811,977 + SO1724 0.77 -1.7
1,811,994 + SO1724 0.78 -0.2
1,811,994 + SO1724 0.78 -1.4
1,812,039 + SO1724 0.81 -0.3
1,812,286 + -0.8
1,812,291 + +0.2
1,812,302 + -0.5
1,812,302 + -0.3

Or see this region's nucleotide sequence