Strain Fitness in Shewanella oneidensis MR-1 around SO1096

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO1095 and SO1096 are separated by 86 nucleotidesSO1096 and SO1097 are separated by 211 nucleotides SO1095: SO1095 - O-acetylhomoserine (thiol)-lyase, putative (NCBI ptt file), at 1,134,406 to 1,135,698 SO1095 SO1096: SO1096 - hypothetical protein (NCBI ptt file), at 1,135,785 to 1,138,922 SO1096 SO1097: SO1097 - conserved hypothetical protein (NCBI ptt file), at 1,139,134 to 1,140,267 SO1097 Position (kb) 1135 1136 1137 1138 1139Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1134.808 kb on - strand, within SO1095at 1134.937 kb on + strand, within SO1095at 1134.939 kb on + strand, within SO1095at 1134.939 kb on + strand, within SO1095at 1134.956 kb on + strand, within SO1095at 1134.961 kb on + strand, within SO1095at 1134.961 kb on + strand, within SO1095at 1134.964 kb on - strand, within SO1095at 1134.969 kb on - strand, within SO1095at 1134.969 kb on - strand, within SO1095at 1134.969 kb on - strand, within SO1095at 1134.974 kb on + strand, within SO1095at 1135.025 kb on - strand, within SO1095at 1135.140 kb on + strand, within SO1095at 1135.148 kb on - strand, within SO1095at 1135.148 kb on - strand, within SO1095at 1135.148 kb on - strand, within SO1095at 1135.148 kb on - strand, within SO1095at 1135.155 kb on + strand, within SO1095at 1135.161 kb on - strand, within SO1095at 1135.161 kb on - strand, within SO1095at 1135.200 kb on + strand, within SO1095at 1135.200 kb on + strand, within SO1095at 1135.208 kb on - strand, within SO1095at 1135.208 kb on - strand, within SO1095at 1135.287 kb on - strand, within SO1095at 1135.289 kb on + strand, within SO1095at 1135.289 kb on + strand, within SO1095at 1135.289 kb on + strand, within SO1095at 1135.289 kb on + strand, within SO1095at 1135.289 kb on + strand, within SO1095at 1135.289 kb on + strand, within SO1095at 1135.289 kb on + strand, within SO1095at 1135.297 kb on - strand, within SO1095at 1135.297 kb on - strand, within SO1095at 1135.368 kb on - strand, within SO1095at 1135.456 kb on - strand, within SO1095at 1135.562 kb on + strand, within SO1095at 1135.642 kb on - strandat 1135.666 kb on - strandat 1135.862 kb on + strandat 1135.898 kb on + strandat 1135.906 kb on - strandat 1136.234 kb on + strand, within SO1096at 1136.242 kb on - strand, within SO1096at 1136.318 kb on - strand, within SO1096at 1136.318 kb on - strand, within SO1096at 1136.360 kb on - strand, within SO1096at 1136.488 kb on + strand, within SO1096at 1136.488 kb on + strand, within SO1096at 1136.496 kb on - strand, within SO1096at 1136.496 kb on - strand, within SO1096at 1136.496 kb on - strand, within SO1096at 1136.496 kb on - strand, within SO1096at 1136.496 kb on - strand, within SO1096at 1136.587 kb on - strand, within SO1096at 1136.656 kb on + strand, within SO1096at 1136.724 kb on + strand, within SO1096at 1136.732 kb on - strand, within SO1096at 1136.989 kb on - strand, within SO1096at 1137.081 kb on + strand, within SO1096at 1137.293 kb on + strand, within SO1096at 1137.342 kb on + strand, within SO1096at 1137.350 kb on - strand, within SO1096at 1137.350 kb on - strand, within SO1096at 1137.405 kb on - strand, within SO1096at 1137.450 kb on - strand, within SO1096at 1137.591 kb on + strand, within SO1096at 1137.599 kb on - strand, within SO1096at 1137.704 kb on + strand, within SO1096at 1137.704 kb on + strand, within SO1096at 1137.704 kb on + strand, within SO1096at 1137.704 kb on + strand, within SO1096at 1137.704 kb on + strand, within SO1096at 1137.712 kb on - strand, within SO1096at 1137.712 kb on - strand, within SO1096at 1137.794 kb on + strand, within SO1096at 1137.794 kb on + strand, within SO1096at 1137.794 kb on + strand, within SO1096at 1137.794 kb on + strand, within SO1096at 1137.802 kb on - strand, within SO1096at 1137.802 kb on - strand, within SO1096at 1137.802 kb on - strand, within SO1096at 1137.802 kb on - strand, within SO1096at 1137.802 kb on - strand, within SO1096at 1137.802 kb on - strand, within SO1096at 1137.835 kb on - strand, within SO1096at 1137.965 kb on + strand, within SO1096at 1137.980 kb on - strand, within SO1096at 1138.059 kb on + strand, within SO1096at 1138.091 kb on + strand, within SO1096at 1138.107 kb on + strand, within SO1096at 1138.340 kb on + strand, within SO1096at 1138.377 kb on + strand, within SO1096at 1138.377 kb on + strand, within SO1096at 1138.419 kb on - strand, within SO1096at 1138.496 kb on - strand, within SO1096at 1138.515 kb on + strand, within SO1096at 1138.523 kb on - strand, within SO1096at 1138.683 kb on + strandat 1138.690 kb on + strandat 1138.789 kb on - strandat 1138.789 kb on - strandat 1138.898 kb on + strandat 1138.898 kb on + strandat 1138.951 kb on - strandat 1138.978 kb on + strandat 1138.986 kb on - strandat 1138.986 kb on - strandat 1138.997 kb on + strandat 1138.999 kb on + strandat 1139.004 kb on + strandat 1139.043 kb on - strandat 1139.279 kb on - strand, within SO1097at 1139.317 kb on + strand, within SO1097at 1139.325 kb on - strand, within SO1097at 1139.476 kb on - strand, within SO1097at 1139.504 kb on + strand, within SO1097at 1139.504 kb on + strand, within SO1097at 1139.512 kb on - strand, within SO1097at 1139.512 kb on - strand, within SO1097at 1139.522 kb on - strand, within SO1097at 1139.816 kb on + strand, within SO1097at 1139.839 kb on - strand, within SO1097at 1139.863 kb on - strand, within SO1097at 1139.863 kb on - strand, within SO1097

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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1,134,808 - SO1095 0.31 +0.4
1,134,937 + SO1095 0.41 +1.6
1,134,939 + SO1095 0.41 +0.8
1,134,939 + SO1095 0.41 +0.8
1,134,956 + SO1095 0.43 +1.0
1,134,961 + SO1095 0.43 +0.6
1,134,961 + SO1095 0.43 +1.1
1,134,964 - SO1095 0.43 -0.7
1,134,969 - SO1095 0.44 +1.4
1,134,969 - SO1095 0.44 +1.4
1,134,969 - SO1095 0.44 +2.1
1,134,974 + SO1095 0.44 +1.5
1,135,025 - SO1095 0.48 +1.3
1,135,140 + SO1095 0.57 +1.1
1,135,148 - SO1095 0.57 +1.1
1,135,148 - SO1095 0.57 +0.9
1,135,148 - SO1095 0.57 +1.2
1,135,148 - SO1095 0.57 +0.3
1,135,155 + SO1095 0.58 +1.4
1,135,161 - SO1095 0.58 +1.5
1,135,161 - SO1095 0.58 +1.3
1,135,200 + SO1095 0.61 +1.5
1,135,200 + SO1095 0.61 +1.8
1,135,208 - SO1095 0.62 +1.1
1,135,208 - SO1095 0.62 +0.8
1,135,287 - SO1095 0.68 -0.2
1,135,289 + SO1095 0.68 +1.1
1,135,289 + SO1095 0.68 +1.0
1,135,289 + SO1095 0.68 +0.7
1,135,289 + SO1095 0.68 +2.5
1,135,289 + SO1095 0.68 +1.1
1,135,289 + SO1095 0.68 +1.2
1,135,289 + SO1095 0.68 +1.4
1,135,297 - SO1095 0.69 +2.2
1,135,297 - SO1095 0.69 +0.8
1,135,368 - SO1095 0.74 +0.8
1,135,456 - SO1095 0.81 +0.5
1,135,562 + SO1095 0.89 +1.3
1,135,642 - -0.0
1,135,666 - +1.0
1,135,862 + -1.4
1,135,898 + +0.1
1,135,906 - +0.3
1,136,234 + SO1096 0.14 +0.5
1,136,242 - SO1096 0.15 -0.5
1,136,318 - SO1096 0.17 -0.2
1,136,318 - SO1096 0.17 -0.2
1,136,360 - SO1096 0.18 -1.3
1,136,488 + SO1096 0.22 -0.3
1,136,488 + SO1096 0.22 -0.7
1,136,496 - SO1096 0.23 -0.1
1,136,496 - SO1096 0.23 -0.5
1,136,496 - SO1096 0.23 -0.4
1,136,496 - SO1096 0.23 +0.3
1,136,496 - SO1096 0.23 +0.7
1,136,587 - SO1096 0.26 -0.0
1,136,656 + SO1096 0.28 -0.2
1,136,724 + SO1096 0.30 -0.6
1,136,732 - SO1096 0.30 -0.6
1,136,989 - SO1096 0.38 +0.1
1,137,081 + SO1096 0.41 +0.0
1,137,293 + SO1096 0.48 +1.1
1,137,342 + SO1096 0.50 +0.1
1,137,350 - SO1096 0.50 +0.1
1,137,350 - SO1096 0.50 +0.7
1,137,405 - SO1096 0.52 -0.1
1,137,450 - SO1096 0.53 -0.3
1,137,591 + SO1096 0.58 -0.6
1,137,599 - SO1096 0.58 +1.2
1,137,704 + SO1096 0.61 -0.6
1,137,704 + SO1096 0.61 -1.1
1,137,704 + SO1096 0.61 -0.2
1,137,704 + SO1096 0.61 +1.3
1,137,704 + SO1096 0.61 -0.3
1,137,712 - SO1096 0.61 +0.8
1,137,712 - SO1096 0.61 -1.2
1,137,794 + SO1096 0.64 +0.0
1,137,794 + SO1096 0.64 -0.4
1,137,794 + SO1096 0.64 -0.3
1,137,794 + SO1096 0.64 -0.3
1,137,802 - SO1096 0.64 +0.3
1,137,802 - SO1096 0.64 +0.5
1,137,802 - SO1096 0.64 +0.5
1,137,802 - SO1096 0.64 -1.1
1,137,802 - SO1096 0.64 +1.0
1,137,802 - SO1096 0.64 -0.2
1,137,835 - SO1096 0.65 -0.3
1,137,965 + SO1096 0.69 -0.2
1,137,980 - SO1096 0.70 +0.0
1,138,059 + SO1096 0.72 +0.4
1,138,091 + SO1096 0.73 -0.0
1,138,107 + SO1096 0.74 -0.3
1,138,340 + SO1096 0.81 -0.3
1,138,377 + SO1096 0.83 -4.3
1,138,377 + SO1096 0.83 +0.1
1,138,419 - SO1096 0.84 +0.5
1,138,496 - SO1096 0.86 -0.1
1,138,515 + SO1096 0.87 -0.1
1,138,523 - SO1096 0.87 -1.2
1,138,683 + +0.9
1,138,690 + +0.1
1,138,789 - -0.2
1,138,789 - +1.0
1,138,898 + -0.3
1,138,898 + +0.4
1,138,951 - +0.1
1,138,978 + -0.3
1,138,986 - +0.8
1,138,986 - +0.5
1,138,997 + +0.3
1,138,999 + -0.4
1,139,004 + +1.3
1,139,043 - +1.0
1,139,279 - SO1097 0.13 -0.1
1,139,317 + SO1097 0.16 +0.6
1,139,325 - SO1097 0.17 +0.4
1,139,476 - SO1097 0.30 -0.2
1,139,504 + SO1097 0.33 +1.0
1,139,504 + SO1097 0.33 +0.5
1,139,512 - SO1097 0.33 +0.3
1,139,512 - SO1097 0.33 +0.1
1,139,522 - SO1097 0.34 +0.7
1,139,816 + SO1097 0.60 +1.2
1,139,839 - SO1097 0.62 +0.9
1,139,863 - SO1097 0.64 -0.2
1,139,863 - SO1097 0.64 +0.9

Or see this region's nucleotide sequence