Strain Fitness in Shewanella oneidensis MR-1 around SO0930

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmetK and tkt are separated by 477 nucleotidestkt and epd are separated by 128 nucleotides SO0929: metK - S-adenosylmethionine synthetase (NCBI ptt file), at 957,987 to 959,138 metK SO0930: tkt - transketolase (NCBI ptt file), at 959,616 to 961,610 tkt SO0931: epd - D-erythrose-4-phosphate dehydrogenase (NCBI ptt file), at 961,739 to 962,755 epd Position (kb) 959 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1at 959.426 kb on - strandat 959.456 kb on - strandat 959.456 kb on - strandat 961.648 kb on - strandat 961.677 kb on + strandat 961.855 kb on + strand, within epdat 961.890 kb on - strand, within epdat 962.138 kb on - strand, within epdat 962.145 kb on - strand, within epdat 962.522 kb on + strand, within epdat 962.566 kb on - strand, within epdat 962.576 kb on - strand, within epd

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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959,426 - +0.8
959,456 - -0.1
959,456 - -1.1
961,648 - -1.3
961,677 + +0.3
961,855 + epd SO0931 0.11 -2.6
961,890 - epd SO0931 0.15 -2.0
962,138 - epd SO0931 0.39 -3.2
962,145 - epd SO0931 0.40 -1.8
962,522 + epd SO0931 0.77 -0.7
962,566 - epd SO0931 0.81 -3.0
962,576 - epd SO0931 0.82 -1.7

Or see this region's nucleotide sequence