Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0867 and SO0868 are separated by 57 nucleotides SO0868 and panC are separated by 296 nucleotides
SO0867: SO0867 - serine protease, subtilase family (NCBI ptt file), at 895,915 to 898,371
SO0867
SO0868: SO0868 - hypothetical protein (NCBI ptt file), at 898,429 to 898,950
SO0868
SO0869: panC - pantoate--beta-alanine ligase (NCBI ptt file), at 899,247 to 900,092
panC
Position (kb) 898
899 Strain fitness (log2 ratio) -1
0
1
2 at 897.445 kb on - strand, within SO0867 at 897.445 kb on - strand, within SO0867 at 897.445 kb on - strand, within SO0867 at 897.445 kb on - strand, within SO0867 at 897.474 kb on + strand, within SO0867 at 897.474 kb on + strand, within SO0867 at 897.482 kb on - strand, within SO0867 at 897.526 kb on - strand, within SO0867 at 897.645 kb on + strand, within SO0867 at 897.645 kb on + strand, within SO0867 at 897.645 kb on + strand, within SO0867 at 897.670 kb on + strand, within SO0867 at 897.670 kb on + strand, within SO0867 at 897.670 kb on + strand, within SO0867 at 897.670 kb on + strand, within SO0867 at 897.670 kb on + strand, within SO0867 at 897.688 kb on - strand, within SO0867 at 897.710 kb on + strand, within SO0867 at 897.725 kb on + strand, within SO0867 at 897.792 kb on + strand, within SO0867 at 897.817 kb on + strand, within SO0867 at 897.881 kb on - strand, within SO0867 at 897.920 kb on + strand, within SO0867 at 897.927 kb on - strand, within SO0867 at 897.931 kb on + strand, within SO0867 at 897.931 kb on + strand, within SO0867 at 897.942 kb on + strand, within SO0867 at 897.981 kb on - strand, within SO0867 at 898.024 kb on + strand, within SO0867 at 898.030 kb on + strand, within SO0867 at 898.030 kb on + strand, within SO0867 at 898.030 kb on + strand, within SO0867 at 898.038 kb on - strand, within SO0867 at 898.038 kb on - strand, within SO0867 at 898.055 kb on - strand, within SO0867 at 898.059 kb on + strand, within SO0867 at 898.059 kb on + strand, within SO0867 at 898.067 kb on - strand, within SO0867 at 898.067 kb on - strand, within SO0867 at 898.089 kb on + strand, within SO0867 at 898.097 kb on - strand, within SO0867 at 898.097 kb on - strand, within SO0867 at 898.109 kb on + strand, within SO0867 at 898.159 kb on + strand at 898.197 kb on + strand at 898.202 kb on + strand at 898.205 kb on - strand at 898.205 kb on - strand at 898.298 kb on + strand at 898.298 kb on + strand at 898.298 kb on + strand at 898.306 kb on - strand at 898.310 kb on + strand at 898.310 kb on + strand at 898.328 kb on - strand at 898.365 kb on + strand at 898.365 kb on + strand at 898.365 kb on + strand at 898.365 kb on + strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.497 kb on - strand, within SO0868 at 898.635 kb on + strand, within SO0868 at 898.642 kb on - strand, within SO0868 at 898.680 kb on + strand, within SO0868 at 898.681 kb on - strand, within SO0868 at 898.688 kb on - strand, within SO0868 at 898.897 kb on - strand, within SO0868 at 898.907 kb on - strand at 898.917 kb on - strand at 898.987 kb on - strand at 899.164 kb on + strand at 899.198 kb on - strand at 899.198 kb on - strand at 899.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 897,445 - SO0867 0.62 -0.2 897,445 - SO0867 0.62 -0.1 897,445 - SO0867 0.62 +0.2 897,445 - SO0867 0.62 -0.5 897,474 + SO0867 0.63 +1.2 897,474 + SO0867 0.63 -0.1 897,482 - SO0867 0.64 -0.2 897,526 - SO0867 0.66 +0.1 897,645 + SO0867 0.70 +0.5 897,645 + SO0867 0.70 +1.8 897,645 + SO0867 0.70 -0.5 897,670 + SO0867 0.71 +0.2 897,670 + SO0867 0.71 -1.0 897,670 + SO0867 0.71 +0.1 897,670 + SO0867 0.71 -0.6 897,670 + SO0867 0.71 +0.6 897,688 - SO0867 0.72 -0.5 897,710 + SO0867 0.73 -0.2 897,725 + SO0867 0.74 +0.3 897,792 + SO0867 0.76 +0.0 897,817 + SO0867 0.77 +0.9 897,881 - SO0867 0.80 -1.7 897,920 + SO0867 0.82 -0.0 897,927 - SO0867 0.82 +0.3 897,931 + SO0867 0.82 +0.1 897,931 + SO0867 0.82 +0.4 897,942 + SO0867 0.82 -0.6 897,981 - SO0867 0.84 +0.6 898,024 + SO0867 0.86 -0.5 898,030 + SO0867 0.86 -1.1 898,030 + SO0867 0.86 -1.5 898,030 + SO0867 0.86 +0.1 898,038 - SO0867 0.86 +0.3 898,038 - SO0867 0.86 -0.1 898,055 - SO0867 0.87 +0.3 898,059 + SO0867 0.87 +0.1 898,059 + SO0867 0.87 +0.4 898,067 - SO0867 0.88 +0.0 898,067 - SO0867 0.88 +0.3 898,089 + SO0867 0.88 -0.4 898,097 - SO0867 0.89 -0.3 898,097 - SO0867 0.89 +1.5 898,109 + SO0867 0.89 -0.1 898,159 + +0.9 898,197 + -0.3 898,202 + -0.1 898,205 - +0.4 898,205 - -0.3 898,298 + +0.2 898,298 + +0.2 898,298 + +1.5 898,306 - -0.2 898,310 + -0.3 898,310 + -0.4 898,328 - -0.2 898,365 + -1.5 898,365 + +0.9 898,365 + +0.2 898,365 + +0.2 898,373 - -0.2 898,373 - -0.3 898,373 - -0.4 898,373 - +0.8 898,373 - -0.4 898,373 - +0.5 898,373 - +0.3 898,373 - +0.7 898,497 - SO0868 0.13 -0.3 898,635 + SO0868 0.39 -1.2 898,642 - SO0868 0.41 +0.5 898,680 + SO0868 0.48 -0.4 898,681 - SO0868 0.48 +0.9 898,688 - SO0868 0.50 -0.6 898,897 - SO0868 0.90 -1.3 898,907 - -0.1 898,917 - +1.2 898,987 - -0.0 899,164 + +1.7 899,198 - +0.3 899,198 - -1.1 899,198 - -0.1
Or see this region's nucleotide sequence