Strain Fitness in Shewanella oneidensis MR-1 around SO0544

Experiment: RCH2_defined

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSO0543 and SO0544 are separated by 311 nucleotidesSO0544 and SO0544.1 overlap by 4 nucleotidesSO0544.1 and SO0545 are separated by 3 nucleotides SO0543: SO0543 - hypothetical protein (NCBI ptt file), at 563,976 to 564,152 SO0543 SO0544: SO0544 - sensory box histidine kinase (NCBI ptt file), at 564,464 to 566,617 SO0544 SO0544.1: SO0544.1 - hypothetical cheY-homologous receiver domain protein (NCBI ptt file), at 566,614 to 567,048 SO0544.1 SO0545: SO0545 - response regulator (NCBI ptt file), at 567,052 to 568,779 SO0545 Position (kb) 564 565 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 563.556 kb on - strandat 563.576 kb on - strandat 563.620 kb on - strandat 563.638 kb on + strandat 563.638 kb on + strandat 563.795 kb on + strandat 563.797 kb on + strandat 563.797 kb on + strandat 563.804 kb on - strandat 563.846 kb on + strandat 563.888 kb on + strandat 563.888 kb on + strandat 563.898 kb on + strandat 563.906 kb on - strandat 563.916 kb on - strandat 563.919 kb on - strandat 563.939 kb on + strandat 563.939 kb on + strandat 563.947 kb on - strandat 563.947 kb on - strandat 563.947 kb on - strandat 563.947 kb on - strandat 563.947 kb on - strandat 563.947 kb on - strandat 563.949 kb on + strandat 563.957 kb on - strandat 563.957 kb on - strandat 563.957 kb on - strandat 563.958 kb on - strandat 563.974 kb on + strandat 563.974 kb on + strandat 563.982 kb on - strandat 563.982 kb on - strandat 564.001 kb on - strand, within SO0543at 564.063 kb on - strand, within SO0543at 564.439 kb on + strandat 564.441 kb on - strandat 564.488 kb on + strandat 564.627 kb on + strandat 564.685 kb on + strand, within SO0544at 564.709 kb on + strand, within SO0544at 564.840 kb on + strand, within SO0544at 564.848 kb on - strand, within SO0544at 564.863 kb on + strand, within SO0544at 564.915 kb on - strand, within SO0544at 564.915 kb on - strand, within SO0544at 565.037 kb on + strand, within SO0544at 565.038 kb on - strand, within SO0544at 565.045 kb on - strand, within SO0544at 565.114 kb on - strand, within SO0544at 565.131 kb on - strand, within SO0544at 565.191 kb on + strand, within SO0544at 565.263 kb on + strand, within SO0544at 565.271 kb on + strand, within SO0544at 565.284 kb on + strand, within SO0544at 565.287 kb on - strand, within SO0544at 565.287 kb on - strand, within SO0544at 565.357 kb on - strand, within SO0544at 565.416 kb on + strand, within SO0544at 565.424 kb on - strand, within SO0544at 565.443 kb on + strand, within SO0544at 565.552 kb on - strand, within SO0544at 565.609 kb on + strand, within SO0544at 565.617 kb on - strand, within SO0544at 565.654 kb on - strand, within SO0544at 565.660 kb on - strand, within SO0544at 565.670 kb on + strand, within SO0544at 565.678 kb on + strand, within SO0544at 565.678 kb on - strand, within SO0544at 565.686 kb on - strand, within SO0544at 565.750 kb on + strand, within SO0544at 565.758 kb on - strand, within SO0544at 565.758 kb on - strand, within SO0544at 565.790 kb on - strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.799 kb on + strand, within SO0544at 565.807 kb on - strand, within SO0544at 565.807 kb on - strand, within SO0544at 565.807 kb on - strand, within SO0544at 565.807 kb on - strand, within SO0544at 565.818 kb on + strand, within SO0544at 565.891 kb on + strand, within SO0544at 565.891 kb on + strand, within SO0544at 565.903 kb on + strand, within SO0544at 565.903 kb on + strand, within SO0544at 565.912 kb on + strand, within SO0544at 565.912 kb on - strand, within SO0544at 565.913 kb on - strand, within SO0544at 565.913 kb on - strand, within SO0544at 565.920 kb on - strand, within SO0544at 565.920 kb on - strand, within SO0544at 565.956 kb on - strand, within SO0544at 565.990 kb on + strand, within SO0544at 565.996 kb on - strand, within SO0544at 565.996 kb on - strand, within SO0544at 565.996 kb on - strand, within SO0544at 566.006 kb on - strand, within SO0544at 566.013 kb on + strand, within SO0544at 566.016 kb on - strand, within SO0544at 566.086 kb on - strand, within SO0544at 566.175 kb on + strand, within SO0544at 566.329 kb on - strand, within SO0544at 566.335 kb on - strand, within SO0544at 566.342 kb on - strand, within SO0544at 566.393 kb on + strand, within SO0544at 566.402 kb on + strandat 566.454 kb on + strandat 566.486 kb on + strandat 566.495 kb on - strandat 566.691 kb on - strand, within SO0544.1at 566.722 kb on + strand, within SO0544.1at 566.723 kb on - strand, within SO0544.1at 566.752 kb on - strand, within SO0544.1at 566.887 kb on - strand, within SO0544.1at 566.888 kb on + strand, within SO0544.1at 566.892 kb on - strand, within SO0544.1at 566.903 kb on + strand, within SO0544.1at 566.914 kb on + strand, within SO0544.1at 566.914 kb on + strand, within SO0544.1at 566.922 kb on - strand, within SO0544.1at 566.925 kb on + strand, within SO0544.1at 567.026 kb on + strandat 567.041 kb on + strandat 567.041 kb on + strandat 567.049 kb on - strandat 567.134 kb on + strandat 567.134 kb on + strandat 567.170 kb on + strandat 567.170 kb on + strandat 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.239 kb on + strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.247 kb on - strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.330 kb on + strand, within SO0545at 567.439 kb on + strand, within SO0545at 567.515 kb on + strand, within SO0545at 567.523 kb on - strand, within SO0545at 567.556 kb on - strand, within SO0545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
remove
563,556 - -0.9
563,576 - +0.2
563,620 - -0.0
563,638 + +0.5
563,638 + +0.0
563,795 + -0.4
563,797 + +0.1
563,797 + +0.6
563,804 - +0.2
563,846 + +0.2
563,888 + -0.8
563,888 + +0.0
563,898 + +0.2
563,906 - -0.4
563,916 - -0.5
563,919 - +0.9
563,939 + -0.3
563,939 + +0.0
563,947 - -0.2
563,947 - -0.2
563,947 - +2.3
563,947 - +1.2
563,947 - -0.3
563,947 - -1.1
563,949 + -0.2
563,957 - -0.3
563,957 - +0.1
563,957 - +0.5
563,958 - -0.1
563,974 + -0.4
563,974 + +0.1
563,982 - +0.2
563,982 - -0.4
564,001 - SO0543 0.14 +0.4
564,063 - SO0543 0.49 -2.8
564,439 + -0.9
564,441 - -0.0
564,488 + +0.5
564,627 + +0.7
564,685 + SO0544 0.10 -0.1
564,709 + SO0544 0.11 +0.8
564,840 + SO0544 0.17 -0.8
564,848 - SO0544 0.18 +0.4
564,863 + SO0544 0.19 -0.2
564,915 - SO0544 0.21 +0.1
564,915 - SO0544 0.21 -0.2
565,037 + SO0544 0.27 +0.5
565,038 - SO0544 0.27 -0.1
565,045 - SO0544 0.27 -0.4
565,114 - SO0544 0.30 +0.3
565,131 - SO0544 0.31 -0.4
565,191 + SO0544 0.34 +0.3
565,263 + SO0544 0.37 +0.0
565,271 + SO0544 0.37 +1.2
565,284 + SO0544 0.38 +0.1
565,287 - SO0544 0.38 +0.6
565,287 - SO0544 0.38 -0.6
565,357 - SO0544 0.41 +1.0
565,416 + SO0544 0.44 +0.4
565,424 - SO0544 0.45 -1.2
565,443 + SO0544 0.45 +0.1
565,552 - SO0544 0.51 +0.9
565,609 + SO0544 0.53 +0.7
565,617 - SO0544 0.54 -0.8
565,654 - SO0544 0.55 -0.3
565,660 - SO0544 0.56 +1.4
565,670 + SO0544 0.56 +1.0
565,678 + SO0544 0.56 -0.6
565,678 - SO0544 0.56 +0.2
565,686 - SO0544 0.57 -0.2
565,750 + SO0544 0.60 +0.1
565,758 - SO0544 0.60 -0.2
565,758 - SO0544 0.60 +0.0
565,790 - SO0544 0.62 +1.9
565,799 + SO0544 0.62 +0.5
565,799 + SO0544 0.62 +1.2
565,799 + SO0544 0.62 +0.1
565,799 + SO0544 0.62 +0.5
565,799 + SO0544 0.62 +0.4
565,807 - SO0544 0.62 +0.0
565,807 - SO0544 0.62 +1.1
565,807 - SO0544 0.62 +1.1
565,807 - SO0544 0.62 -0.1
565,818 + SO0544 0.63 +0.9
565,891 + SO0544 0.66 +0.5
565,891 + SO0544 0.66 +0.9
565,903 + SO0544 0.67 +0.7
565,903 + SO0544 0.67 +1.8
565,912 + SO0544 0.67 -0.1
565,912 - SO0544 0.67 -0.1
565,913 - SO0544 0.67 +0.4
565,913 - SO0544 0.67 +0.0
565,920 - SO0544 0.68 +0.7
565,920 - SO0544 0.68 +0.4
565,956 - SO0544 0.69 -0.1
565,990 + SO0544 0.71 +0.6
565,996 - SO0544 0.71 +0.5
565,996 - SO0544 0.71 +0.2
565,996 - SO0544 0.71 -0.6
566,006 - SO0544 0.72 -0.3
566,013 + SO0544 0.72 +1.4
566,016 - SO0544 0.72 +0.6
566,086 - SO0544 0.75 -0.7
566,175 + SO0544 0.79 +0.1
566,329 - SO0544 0.87 +0.2
566,335 - SO0544 0.87 -1.4
566,342 - SO0544 0.87 -0.9
566,393 + SO0544 0.90 +0.8
566,402 + +1.4
566,454 + +0.1
566,486 + +0.6
566,495 - +0.9
566,691 - SO0544.1 0.18 -0.1
566,722 + SO0544.1 0.25 +0.7
566,723 - SO0544.1 0.25 -0.4
566,752 - SO0544.1 0.32 -0.8
566,887 - SO0544.1 0.63 +0.0
566,888 + SO0544.1 0.63 -0.3
566,892 - SO0544.1 0.64 -0.5
566,903 + SO0544.1 0.66 +0.4
566,914 + SO0544.1 0.69 +0.4
566,914 + SO0544.1 0.69 +1.1
566,922 - SO0544.1 0.71 -0.7
566,925 + SO0544.1 0.71 -0.1
567,026 + +0.9
567,041 + +0.0
567,041 + -0.3
567,049 - -1.1
567,134 + +0.1
567,134 + +0.8
567,170 + +0.1
567,170 + -0.1
567,239 + SO0545 0.11 -0.9
567,239 + SO0545 0.11 +0.4
567,239 + SO0545 0.11 -1.2
567,239 + SO0545 0.11 +0.0
567,239 + SO0545 0.11 -0.7
567,247 - SO0545 0.11 -0.3
567,247 - SO0545 0.11 -0.6
567,247 - SO0545 0.11 -0.4
567,247 - SO0545 0.11 +0.8
567,247 - SO0545 0.11 +0.2
567,247 - SO0545 0.11 +0.6
567,247 - SO0545 0.11 -0.7
567,247 - SO0545 0.11 +0.5
567,247 - SO0545 0.11 +3.0
567,247 - SO0545 0.11 +0.3
567,247 - SO0545 0.11 +0.2
567,330 + SO0545 0.16 -2.1
567,330 + SO0545 0.16 +1.3
567,330 + SO0545 0.16 +0.4
567,439 + SO0545 0.22 +0.2
567,515 + SO0545 0.27 +0.9
567,523 - SO0545 0.27 +2.1
567,556 - SO0545 0.29 -0.2

Or see this region's nucleotide sequence