Strain Fitness in Shewanella oneidensis MR-1 around SO0180

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0177 and SO0179 are separated by 151 nucleotidesSO0179 and SO0180 overlap by 23 nucleotidesSO0180 and SO0181 are separated by 80 nucleotides SO0177: SO0177 - HAD-superfamily hydrolase, subfamily IA, variant 3 protein family (NCBI ptt file), at 182,935 to 183,597 SO0177 SO0179: SO0179 - conserved hypothetical protein (NCBI ptt file), at 183,749 to 184,327 SO0179 SO0180: SO0180 - hypothetical protein (NCBI ptt file), at 184,305 to 186,314 SO0180 SO0181: SO0181 - hypothetical protein (NCBI ptt file), at 186,395 to 187,441 SO0181 Position (kb) 184 185 186 187Strain fitness (log2 ratio) -2 -1 0 1 2at 183.324 kb on - strand, within SO0177at 183.501 kb on + strand, within SO0177at 183.501 kb on + strand, within SO0177at 183.501 kb on + strand, within SO0177at 183.509 kb on - strand, within SO0177at 183.567 kb on + strandat 183.570 kb on - strandat 183.570 kb on - strandat 183.785 kb on - strandat 183.833 kb on - strand, within SO0179at 183.833 kb on - strand, within SO0179at 183.872 kb on + strand, within SO0179at 183.872 kb on - strand, within SO0179at 183.878 kb on + strand, within SO0179at 183.878 kb on + strand, within SO0179at 183.891 kb on - strand, within SO0179at 183.979 kb on - strand, within SO0179at 184.003 kb on - strand, within SO0179at 184.021 kb on + strand, within SO0179at 184.085 kb on + strand, within SO0179at 184.092 kb on + strand, within SO0179at 184.100 kb on - strand, within SO0179at 184.100 kb on - strand, within SO0179at 184.100 kb on - strand, within SO0179at 184.177 kb on + strand, within SO0179at 184.195 kb on - strand, within SO0179at 184.218 kb on + strand, within SO0179at 184.332 kb on + strandat 184.348 kb on + strandat 184.356 kb on - strandat 184.380 kb on + strandat 184.483 kb on + strandat 184.511 kb on - strand, within SO0180at 184.601 kb on + strand, within SO0180at 184.601 kb on + strand, within SO0180at 184.604 kb on - strand, within SO0180at 184.609 kb on - strand, within SO0180at 184.609 kb on - strand, within SO0180at 184.622 kb on + strand, within SO0180at 184.627 kb on + strand, within SO0180at 184.674 kb on + strand, within SO0180at 184.682 kb on - strand, within SO0180at 184.694 kb on + strand, within SO0180at 184.702 kb on - strand, within SO0180at 184.808 kb on - strand, within SO0180at 184.813 kb on - strand, within SO0180at 184.887 kb on + strand, within SO0180at 184.931 kb on - strand, within SO0180at 184.962 kb on + strand, within SO0180at 185.040 kb on - strand, within SO0180at 185.115 kb on - strand, within SO0180at 185.197 kb on + strand, within SO0180at 185.232 kb on - strand, within SO0180at 185.328 kb on + strand, within SO0180at 185.328 kb on + strand, within SO0180at 185.328 kb on + strand, within SO0180at 185.336 kb on - strand, within SO0180at 185.336 kb on - strand, within SO0180at 185.338 kb on + strand, within SO0180at 185.389 kb on + strand, within SO0180at 185.399 kb on + strand, within SO0180at 185.399 kb on + strand, within SO0180at 185.399 kb on + strand, within SO0180at 185.399 kb on + strand, within SO0180at 185.407 kb on - strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.463 kb on + strand, within SO0180at 185.471 kb on - strand, within SO0180at 185.471 kb on - strand, within SO0180at 185.484 kb on - strand, within SO0180at 185.677 kb on - strand, within SO0180at 185.677 kb on - strand, within SO0180at 185.762 kb on + strand, within SO0180at 185.770 kb on - strand, within SO0180at 185.770 kb on - strand, within SO0180at 185.770 kb on - strand, within SO0180at 185.770 kb on - strand, within SO0180at 185.924 kb on + strand, within SO0180at 185.952 kb on - strand, within SO0180at 186.011 kb on + strand, within SO0180at 186.011 kb on + strand, within SO0180at 186.097 kb on + strand, within SO0180at 186.164 kb on + strandat 186.172 kb on - strandat 186.239 kb on - strandat 186.247 kb on - strandat 186.264 kb on + strandat 186.279 kb on + strandat 186.372 kb on + strandat 186.380 kb on - strandat 186.392 kb on + strandat 186.392 kb on + strandat 186.399 kb on - strandat 186.399 kb on - strandat 186.493 kb on + strandat 186.498 kb on + strandat 186.506 kb on - strand, within SO0181at 186.506 kb on - strand, within SO0181at 186.506 kb on - strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.566 kb on + strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.574 kb on - strand, within SO0181at 186.674 kb on + strand, within SO0181at 186.682 kb on - strand, within SO0181at 186.761 kb on + strand, within SO0181at 186.785 kb on - strand, within SO0181at 186.785 kb on - strandat 186.799 kb on - strand, within SO0181at 186.808 kb on + strand, within SO0181at 186.820 kb on - strand, within SO0181at 186.844 kb on - strand, within SO0181at 186.847 kb on + strand, within SO0181at 186.861 kb on - strand, within SO0181at 186.910 kb on + strand, within SO0181at 186.923 kb on - strand, within SO0181at 186.995 kb on + strand, within SO0181at 186.995 kb on - strand, within SO0181at 187.039 kb on - strand, within SO0181at 187.151 kb on + strand, within SO0181at 187.151 kb on - strand, within SO0181at 187.168 kb on + strand, within SO0181at 187.176 kb on + strand, within SO0181at 187.190 kb on - strand, within SO0181at 187.205 kb on - strand, within SO0181at 187.205 kb on - strand, within SO0181at 187.218 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.276 kb on + strand, within SO0181at 187.283 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181at 187.284 kb on - strand, within SO0181

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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183,324 - SO0177 0.59 +0.8
183,501 + SO0177 0.85 +0.6
183,501 + SO0177 0.85 -0.5
183,501 + SO0177 0.85 -0.9
183,509 - SO0177 0.87 -0.8
183,567 + +0.1
183,570 - -0.1
183,570 - +0.2
183,785 - +1.3
183,833 - SO0179 0.15 -0.9
183,833 - SO0179 0.15 +0.7
183,872 + SO0179 0.21 -2.1
183,872 - SO0179 0.21 +0.4
183,878 + SO0179 0.22 +0.4
183,878 + SO0179 0.22 -0.2
183,891 - SO0179 0.25 +0.4
183,979 - SO0179 0.40 +0.3
184,003 - SO0179 0.44 +0.3
184,021 + SO0179 0.47 +0.6
184,085 + SO0179 0.58 +1.0
184,092 + SO0179 0.59 +1.3
184,100 - SO0179 0.61 +0.9
184,100 - SO0179 0.61 -0.3
184,100 - SO0179 0.61 -0.6
184,177 + SO0179 0.74 +0.3
184,195 - SO0179 0.77 -0.0
184,218 + SO0179 0.81 +0.3
184,332 + +1.2
184,348 + +0.4
184,356 - -2.1
184,380 + -1.8
184,483 + -0.1
184,511 - SO0180 0.10 -0.4
184,601 + SO0180 0.15 +0.5
184,601 + SO0180 0.15 +0.6
184,604 - SO0180 0.15 -0.6
184,609 - SO0180 0.15 -0.6
184,609 - SO0180 0.15 +1.0
184,622 + SO0180 0.16 -1.1
184,627 + SO0180 0.16 -0.4
184,674 + SO0180 0.18 +0.4
184,682 - SO0180 0.19 -0.4
184,694 + SO0180 0.19 -0.2
184,702 - SO0180 0.20 +0.9
184,808 - SO0180 0.25 -1.3
184,813 - SO0180 0.25 -0.5
184,887 + SO0180 0.29 +2.0
184,931 - SO0180 0.31 +0.1
184,962 + SO0180 0.33 +0.4
185,040 - SO0180 0.37 +0.9
185,115 - SO0180 0.40 -0.6
185,197 + SO0180 0.44 +0.1
185,232 - SO0180 0.46 -0.3
185,328 + SO0180 0.51 -0.9
185,328 + SO0180 0.51 -0.3
185,328 + SO0180 0.51 -0.4
185,336 - SO0180 0.51 -0.2
185,336 - SO0180 0.51 -0.0
185,338 + SO0180 0.51 +1.1
185,389 + SO0180 0.54 +0.7
185,399 + SO0180 0.54 +0.1
185,399 + SO0180 0.54 +0.3
185,399 + SO0180 0.54 +1.7
185,399 + SO0180 0.54 -0.6
185,407 - SO0180 0.55 -0.3
185,463 + SO0180 0.58 +0.5
185,463 + SO0180 0.58 +0.4
185,463 + SO0180 0.58 -0.4
185,463 + SO0180 0.58 +0.2
185,463 + SO0180 0.58 +0.1
185,471 - SO0180 0.58 -0.0
185,471 - SO0180 0.58 +0.8
185,484 - SO0180 0.59 +0.6
185,677 - SO0180 0.68 -0.4
185,677 - SO0180 0.68 -0.4
185,762 + SO0180 0.72 -0.2
185,770 - SO0180 0.73 +0.4
185,770 - SO0180 0.73 +0.8
185,770 - SO0180 0.73 -0.3
185,770 - SO0180 0.73 -0.6
185,924 + SO0180 0.81 -1.3
185,952 - SO0180 0.82 +0.0
186,011 + SO0180 0.85 +0.4
186,011 + SO0180 0.85 +0.2
186,097 + SO0180 0.89 +0.1
186,164 + -0.3
186,172 - +0.6
186,239 - -0.3
186,247 - -0.6
186,264 + -1.7
186,279 + -0.1
186,372 + -0.9
186,380 - -0.4
186,392 + -1.4
186,392 + +0.7
186,399 - -0.2
186,399 - -0.3
186,493 + -0.2
186,498 + +0.6
186,506 - SO0181 0.11 -1.1
186,506 - SO0181 0.11 +0.9
186,506 - SO0181 0.11 +0.1
186,566 + SO0181 0.16 -0.6
186,566 + SO0181 0.16 +0.6
186,566 + SO0181 0.16 +0.4
186,566 + SO0181 0.16 +0.3
186,574 - SO0181 0.17 +1.0
186,574 - SO0181 0.17 +0.6
186,574 - SO0181 0.17 -0.4
186,574 - SO0181 0.17 -1.7
186,574 - SO0181 0.17 +0.5
186,574 - SO0181 0.17 +0.4
186,574 - SO0181 0.17 -0.5
186,574 - SO0181 0.17 +1.0
186,674 + SO0181 0.27 -0.4
186,682 - SO0181 0.27 +0.5
186,761 + SO0181 0.35 +0.3
186,785 - SO0181 0.37 -0.9
186,785 - +1.0
186,799 - SO0181 0.39 +1.0
186,808 + SO0181 0.39 +0.4
186,820 - SO0181 0.41 +0.6
186,844 - SO0181 0.43 +0.8
186,847 + SO0181 0.43 -0.2
186,861 - SO0181 0.45 +0.8
186,910 + SO0181 0.49 -0.4
186,923 - SO0181 0.50 -0.0
186,995 + SO0181 0.57 -0.2
186,995 - SO0181 0.57 -0.8
187,039 - SO0181 0.62 -0.4
187,151 + SO0181 0.72 +0.9
187,151 - SO0181 0.72 +0.6
187,168 + SO0181 0.74 -0.0
187,176 + SO0181 0.75 +0.9
187,190 - SO0181 0.76 +0.2
187,205 - SO0181 0.77 +0.2
187,205 - SO0181 0.77 -0.1
187,218 + SO0181 0.79 -0.8
187,276 + SO0181 0.84 +0.1
187,276 + SO0181 0.84 -0.2
187,276 + SO0181 0.84 +1.0
187,276 + SO0181 0.84 +0.4
187,276 + SO0181 0.84 +0.3
187,276 + SO0181 0.84 +1.9
187,276 + SO0181 0.84 -1.4
187,283 - SO0181 0.85 -0.8
187,284 - SO0181 0.85 +1.1
187,284 - SO0181 0.85 -0.4
187,284 - SO0181 0.85 +0.6

Or see this region's nucleotide sequence