Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gspN and SO0177 are separated by 59 nucleotides SO0177 and SO0179 are separated by 151 nucleotides SO0179 and SO0180 overlap by 23 nucleotides
SO0176: gspN - general secretion pathway protein N (NCBI ptt file), at 182,114 to 182,875
gspN
SO0177: SO0177 - HAD-superfamily hydrolase, subfamily IA, variant 3 protein family (NCBI ptt file), at 182,935 to 183,597
SO0177
SO0179: SO0179 - conserved hypothetical protein (NCBI ptt file), at 183,749 to 184,327
SO0179
SO0180: SO0180 - hypothetical protein (NCBI ptt file), at 184,305 to 186,314
SO0180
Position (kb) 183
184
185 Strain fitness (log2 ratio) -2
-1
0
1
2 at 182.758 kb on + strand, within gspN at 182.766 kb on - strand, within gspN at 182.787 kb on - strand, within gspN at 182.827 kb on + strand at 182.869 kb on + strand at 182.966 kb on - strand at 183.038 kb on - strand, within SO0177 at 183.051 kb on - strand, within SO0177 at 183.203 kb on - strand, within SO0177 at 183.213 kb on - strand, within SO0177 at 183.228 kb on + strand, within SO0177 at 183.242 kb on + strand, within SO0177 at 183.242 kb on + strand, within SO0177 at 183.242 kb on + strand, within SO0177 at 183.242 kb on + strand, within SO0177 at 183.242 kb on + strand, within SO0177 at 183.242 kb on + strand, within SO0177 at 183.242 kb on + strand, within SO0177 at 183.242 kb on + strand, within SO0177 at 183.324 kb on - strand, within SO0177 at 183.501 kb on + strand, within SO0177 at 183.501 kb on + strand, within SO0177 at 183.501 kb on + strand, within SO0177 at 183.509 kb on - strand, within SO0177 at 183.567 kb on + strand at 183.570 kb on - strand at 183.570 kb on - strand at 183.785 kb on - strand at 183.833 kb on - strand, within SO0179 at 183.833 kb on - strand, within SO0179 at 183.872 kb on + strand, within SO0179 at 183.872 kb on - strand, within SO0179 at 183.878 kb on + strand, within SO0179 at 183.878 kb on + strand, within SO0179 at 183.891 kb on - strand, within SO0179 at 183.979 kb on - strand, within SO0179 at 184.003 kb on - strand, within SO0179 at 184.021 kb on + strand, within SO0179 at 184.085 kb on + strand, within SO0179 at 184.092 kb on + strand, within SO0179 at 184.100 kb on - strand, within SO0179 at 184.100 kb on - strand, within SO0179 at 184.100 kb on - strand, within SO0179 at 184.177 kb on + strand, within SO0179 at 184.195 kb on - strand, within SO0179 at 184.218 kb on + strand, within SO0179 at 184.332 kb on + strand at 184.348 kb on + strand at 184.356 kb on - strand at 184.380 kb on + strand at 184.483 kb on + strand at 184.511 kb on - strand, within SO0180 at 184.601 kb on + strand, within SO0180 at 184.601 kb on + strand, within SO0180 at 184.604 kb on - strand, within SO0180 at 184.609 kb on - strand, within SO0180 at 184.609 kb on - strand, within SO0180 at 184.622 kb on + strand, within SO0180 at 184.627 kb on + strand, within SO0180 at 184.674 kb on + strand, within SO0180 at 184.682 kb on - strand, within SO0180 at 184.694 kb on + strand, within SO0180 at 184.702 kb on - strand, within SO0180 at 184.808 kb on - strand, within SO0180 at 184.813 kb on - strand, within SO0180 at 184.887 kb on + strand, within SO0180 at 184.931 kb on - strand, within SO0180 at 184.962 kb on + strand, within SO0180 at 185.040 kb on - strand, within SO0180 at 185.115 kb on - strand, within SO0180 at 185.197 kb on + strand, within SO0180 at 185.232 kb on - strand, within SO0180
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 182,758 + gspN SO0176 0.85 +0.6 182,766 - gspN SO0176 0.86 -0.0 182,787 - gspN SO0176 0.88 +0.8 182,827 + -0.3 182,869 + -0.6 182,966 - -0.3 183,038 - SO0177 0.16 -0.2 183,051 - SO0177 0.17 -0.3 183,203 - SO0177 0.40 -0.1 183,213 - SO0177 0.42 -0.1 183,228 + SO0177 0.44 -1.4 183,242 + SO0177 0.46 -0.2 183,242 + SO0177 0.46 -0.4 183,242 + SO0177 0.46 -0.0 183,242 + SO0177 0.46 +0.7 183,242 + SO0177 0.46 +0.1 183,242 + SO0177 0.46 +1.1 183,242 + SO0177 0.46 +0.3 183,242 + SO0177 0.46 -0.3 183,324 - SO0177 0.59 +0.8 183,501 + SO0177 0.85 +0.6 183,501 + SO0177 0.85 -0.5 183,501 + SO0177 0.85 -0.9 183,509 - SO0177 0.87 -0.8 183,567 + +0.1 183,570 - -0.1 183,570 - +0.2 183,785 - +1.3 183,833 - SO0179 0.15 -0.9 183,833 - SO0179 0.15 +0.7 183,872 + SO0179 0.21 -2.1 183,872 - SO0179 0.21 +0.4 183,878 + SO0179 0.22 +0.4 183,878 + SO0179 0.22 -0.2 183,891 - SO0179 0.25 +0.4 183,979 - SO0179 0.40 +0.3 184,003 - SO0179 0.44 +0.3 184,021 + SO0179 0.47 +0.6 184,085 + SO0179 0.58 +1.0 184,092 + SO0179 0.59 +1.3 184,100 - SO0179 0.61 +0.9 184,100 - SO0179 0.61 -0.3 184,100 - SO0179 0.61 -0.6 184,177 + SO0179 0.74 +0.3 184,195 - SO0179 0.77 -0.0 184,218 + SO0179 0.81 +0.3 184,332 + +1.2 184,348 + +0.4 184,356 - -2.1 184,380 + -1.8 184,483 + -0.1 184,511 - SO0180 0.10 -0.4 184,601 + SO0180 0.15 +0.5 184,601 + SO0180 0.15 +0.6 184,604 - SO0180 0.15 -0.6 184,609 - SO0180 0.15 -0.6 184,609 - SO0180 0.15 +1.0 184,622 + SO0180 0.16 -1.1 184,627 + SO0180 0.16 -0.4 184,674 + SO0180 0.18 +0.4 184,682 - SO0180 0.19 -0.4 184,694 + SO0180 0.19 -0.2 184,702 - SO0180 0.20 +0.9 184,808 - SO0180 0.25 -1.3 184,813 - SO0180 0.25 -0.5 184,887 + SO0180 0.29 +2.0 184,931 - SO0180 0.31 +0.1 184,962 + SO0180 0.33 +0.4 185,040 - SO0180 0.37 +0.9 185,115 - SO0180 0.40 -0.6 185,197 + SO0180 0.44 +0.1 185,232 - SO0180 0.46 -0.3
Or see this region's nucleotide sequence