Strain Fitness in Shewanella oneidensis MR-1 around SO0060

Experiment: RCH2_defined

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0058 and kdpE are separated by 45 nucleotideskdpE and SO0060 are separated by 0 nucleotidesSO0060 and SO0061 are separated by 264 nucleotides SO0058: SO0058 - potassium uptake protein, putative (NCBI ptt file), at 65,662 to 66,360 SO0058 SO0059: kdpE - transcriptional regulatory protein KdpE (NCBI ptt file), at 66,406 to 67,095 kdpE SO0060: SO0060 - sensor histidine kinase (NCBI ptt file), at 67,096 to 68,142 SO0060 SO0061: SO0061 - lipoprotein, NLP/P60 family (NCBI ptt file), at 68,407 to 68,871 SO0061 Position (kb) 67 68 69Strain fitness (log2 ratio) -2 -1 0 1at 66.110 kb on + strand, within SO0058at 66.132 kb on + strand, within SO0058at 66.151 kb on + strand, within SO0058at 66.182 kb on - strandat 66.197 kb on - strand, within SO0058at 66.288 kb on + strand, within SO0058at 66.310 kb on + strandat 66.310 kb on + strandat 66.311 kb on - strandat 66.318 kb on - strandat 66.331 kb on + strandat 66.343 kb on - strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.390 kb on + strandat 66.398 kb on - strandat 66.398 kb on - strandat 66.412 kb on - strandat 66.436 kb on + strandat 66.436 kb on + strandat 66.436 kb on + strandat 66.436 kb on + strandat 66.444 kb on - strandat 66.444 kb on - strandat 66.444 kb on - strandat 66.452 kb on + strandat 66.460 kb on + strandat 66.473 kb on + strandat 66.546 kb on + strand, within kdpEat 66.583 kb on - strand, within kdpEat 66.585 kb on - strand, within kdpEat 66.607 kb on - strand, within kdpEat 66.709 kb on - strand, within kdpEat 66.760 kb on - strand, within kdpEat 66.761 kb on - strand, within kdpEat 66.798 kb on + strand, within kdpEat 66.867 kb on + strand, within kdpEat 66.930 kb on + strand, within kdpEat 67.019 kb on - strand, within kdpEat 67.049 kb on - strandat 67.054 kb on + strandat 67.103 kb on - strandat 67.242 kb on - strand, within SO0060at 67.273 kb on + strand, within SO0060at 67.292 kb on + strand, within SO0060at 67.293 kb on - strand, within SO0060at 67.300 kb on - strand, within SO0060at 67.310 kb on - strand, within SO0060at 67.330 kb on - strand, within SO0060at 67.331 kb on - strand, within SO0060at 67.345 kb on + strand, within SO0060at 67.352 kb on + strand, within SO0060at 67.352 kb on + strand, within SO0060at 67.393 kb on - strand, within SO0060at 67.495 kb on - strand, within SO0060at 67.495 kb on - strand, within SO0060at 67.497 kb on + strand, within SO0060at 67.505 kb on - strand, within SO0060at 67.510 kb on + strand, within SO0060at 67.510 kb on + strand, within SO0060at 67.518 kb on - strand, within SO0060at 67.518 kb on - strand, within SO0060at 67.518 kb on - strand, within SO0060at 67.608 kb on + strand, within SO0060at 67.616 kb on - strand, within SO0060at 67.616 kb on - strand, within SO0060at 67.633 kb on + strand, within SO0060at 67.641 kb on - strand, within SO0060at 67.649 kb on - strand, within SO0060at 67.666 kb on - strand, within SO0060at 67.736 kb on + strand, within SO0060at 67.773 kb on + strand, within SO0060at 67.812 kb on + strand, within SO0060at 67.820 kb on - strand, within SO0060at 67.820 kb on - strand, within SO0060at 67.868 kb on + strand, within SO0060at 67.869 kb on + strand, within SO0060at 67.933 kb on - strand, within SO0060at 68.005 kb on - strand, within SO0060at 68.154 kb on - strandat 68.154 kb on - strandat 68.155 kb on - strandat 68.297 kb on + strandat 68.310 kb on - strandat 68.328 kb on - strandat 68.368 kb on + strandat 68.373 kb on + strandat 68.387 kb on - strandat 68.389 kb on + strandat 68.442 kb on - strandat 68.442 kb on - strandat 68.469 kb on + strand, within SO0061at 68.469 kb on + strand, within SO0061at 68.469 kb on + strand, within SO0061at 68.469 kb on + strand, within SO0061at 68.469 kb on + strand, within SO0061at 68.469 kb on + strand, within SO0061at 68.476 kb on - strand, within SO0061at 68.477 kb on - strand, within SO0061at 68.477 kb on - strand, within SO0061at 68.477 kb on - strand, within SO0061at 68.477 kb on - strand, within SO0061at 68.517 kb on + strand, within SO0061at 68.530 kb on + strand, within SO0061at 68.565 kb on - strand, within SO0061at 68.610 kb on - strand, within SO0061at 68.634 kb on + strand, within SO0061at 68.644 kb on - strand, within SO0061at 68.654 kb on + strand, within SO0061at 68.676 kb on + strand, within SO0061at 68.741 kb on - strand, within SO0061at 68.744 kb on + strand, within SO0061at 68.823 kb on + strand, within SO0061at 68.823 kb on + strand, within SO0061at 68.823 kb on + strand, within SO0061at 68.831 kb on + strandat 68.832 kb on + strandat 68.872 kb on + strandat 68.882 kb on + strandat 68.902 kb on + strandat 68.902 kb on + strandat 68.902 kb on + strandat 68.910 kb on - strandat 68.910 kb on - strandat 68.939 kb on + strandat 68.956 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined
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66,110 + SO0058 0.64 -0.0
66,132 + SO0058 0.67 -1.0
66,151 + SO0058 0.70 -0.3
66,182 - -0.0
66,197 - SO0058 0.77 +1.3
66,288 + SO0058 0.90 +0.1
66,310 + -0.8
66,310 + -0.6
66,311 - +0.6
66,318 - -0.1
66,331 + -0.7
66,343 - -0.9
66,390 + +0.0
66,390 + -0.3
66,390 + +0.1
66,390 + +0.1
66,390 + -0.8
66,390 + -0.0
66,390 + -1.0
66,398 - -0.8
66,398 - -0.5
66,412 - -0.3
66,436 + +0.2
66,436 + +0.0
66,436 + -0.7
66,436 + -1.2
66,444 - +0.2
66,444 - +0.2
66,444 - -0.3
66,452 + -0.4
66,460 + +0.3
66,473 + +0.3
66,546 + kdpE SO0059 0.20 -0.1
66,583 - kdpE SO0059 0.26 -1.3
66,585 - kdpE SO0059 0.26 -0.3
66,607 - kdpE SO0059 0.29 +1.1
66,709 - kdpE SO0059 0.44 +0.9
66,760 - kdpE SO0059 0.51 -1.3
66,761 - kdpE SO0059 0.51 -0.2
66,798 + kdpE SO0059 0.57 +1.0
66,867 + kdpE SO0059 0.67 -0.5
66,930 + kdpE SO0059 0.76 +0.3
67,019 - kdpE SO0059 0.89 -0.8
67,049 - -0.4
67,054 + -1.0
67,103 - -0.7
67,242 - SO0060 0.14 -1.7
67,273 + SO0060 0.17 -1.8
67,292 + SO0060 0.19 +0.0
67,293 - SO0060 0.19 -1.0
67,300 - SO0060 0.19 +1.3
67,310 - SO0060 0.20 -0.2
67,330 - SO0060 0.22 +0.3
67,331 - SO0060 0.22 +0.2
67,345 + SO0060 0.24 +0.6
67,352 + SO0060 0.24 -0.0
67,352 + SO0060 0.24 -0.0
67,393 - SO0060 0.28 +0.5
67,495 - SO0060 0.38 -0.2
67,495 - SO0060 0.38 -0.0
67,497 + SO0060 0.38 -0.1
67,505 - SO0060 0.39 +0.5
67,510 + SO0060 0.40 +0.0
67,510 + SO0060 0.40 +0.1
67,518 - SO0060 0.40 +0.3
67,518 - SO0060 0.40 -0.2
67,518 - SO0060 0.40 +0.2
67,608 + SO0060 0.49 -0.6
67,616 - SO0060 0.50 -0.3
67,616 - SO0060 0.50 +0.2
67,633 + SO0060 0.51 -0.0
67,641 - SO0060 0.52 +0.1
67,649 - SO0060 0.53 -1.3
67,666 - SO0060 0.54 +0.4
67,736 + SO0060 0.61 -0.7
67,773 + SO0060 0.65 +0.4
67,812 + SO0060 0.68 +0.6
67,820 - SO0060 0.69 -0.8
67,820 - SO0060 0.69 -0.5
67,868 + SO0060 0.74 -0.0
67,869 + SO0060 0.74 +0.3
67,933 - SO0060 0.80 +0.7
68,005 - SO0060 0.87 -0.6
68,154 - -0.8
68,154 - -0.1
68,155 - -1.4
68,297 + -0.6
68,310 - -0.0
68,328 - +0.3
68,368 + -0.2
68,373 + -0.6
68,387 - +0.5
68,389 + +0.6
68,442 - -0.3
68,442 - +0.1
68,469 + SO0061 0.13 +0.1
68,469 + SO0061 0.13 +0.3
68,469 + SO0061 0.13 +0.3
68,469 + SO0061 0.13 +1.1
68,469 + SO0061 0.13 -0.9
68,469 + SO0061 0.13 +0.2
68,476 - SO0061 0.15 +0.4
68,477 - SO0061 0.15 -0.1
68,477 - SO0061 0.15 +0.8
68,477 - SO0061 0.15 +0.8
68,477 - SO0061 0.15 +0.7
68,517 + SO0061 0.24 +0.2
68,530 + SO0061 0.26 +0.2
68,565 - SO0061 0.34 -0.2
68,610 - SO0061 0.44 -0.1
68,634 + SO0061 0.49 +0.6
68,644 - SO0061 0.51 -0.2
68,654 + SO0061 0.53 -0.6
68,676 + SO0061 0.58 -0.1
68,741 - SO0061 0.72 +0.3
68,744 + SO0061 0.72 +0.5
68,823 + SO0061 0.89 +0.0
68,823 + SO0061 0.89 -1.7
68,823 + SO0061 0.89 +0.6
68,831 + +0.0
68,832 + -0.2
68,872 + +0.2
68,882 + -0.5
68,902 + +0.6
68,902 + -0.5
68,902 + +0.6
68,910 - +0.9
68,910 - +0.6
68,939 + -0.0
68,956 + -0.3

Or see this region's nucleotide sequence