Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0057 and SO0058 are separated by 1 nucleotides SO0058 and kdpE are separated by 45 nucleotides kdpE and SO0060 are separated by 0 nucleotides
SO0057: SO0057 - potassium uptake protein, Trk family (NCBI ptt file), at 64,299 to 65,660
SO0057
SO0058: SO0058 - potassium uptake protein, putative (NCBI ptt file), at 65,662 to 66,360
SO0058
SO0059: kdpE - transcriptional regulatory protein KdpE (NCBI ptt file), at 66,406 to 67,095
kdpE
SO0060: SO0060 - sensor histidine kinase (NCBI ptt file), at 67,096 to 68,142
SO0060
Position (kb) 65
66
67 Strain fitness (log2 ratio) -2
-1
0
1
2 at 64.676 kb on + strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.752 kb on - strand, within SO0057 at 64.754 kb on + strand, within SO0057 at 64.762 kb on - strand, within SO0057 at 64.762 kb on - strand, within SO0057 at 64.811 kb on + strand, within SO0057 at 64.811 kb on + strand, within SO0057 at 64.819 kb on + strand, within SO0057 at 64.819 kb on - strand, within SO0057 at 64.869 kb on - strand, within SO0057 at 64.910 kb on + strand, within SO0057 at 64.918 kb on + strand, within SO0057 at 64.923 kb on + strand, within SO0057 at 64.928 kb on + strand, within SO0057 at 64.928 kb on + strand, within SO0057 at 64.936 kb on - strand, within SO0057 at 64.936 kb on - strand, within SO0057 at 65.002 kb on - strand, within SO0057 at 65.020 kb on - strand, within SO0057 at 65.099 kb on + strand, within SO0057 at 65.165 kb on + strand, within SO0057 at 65.220 kb on - strand, within SO0057 at 65.262 kb on + strand, within SO0057 at 65.333 kb on + strand, within SO0057 at 65.341 kb on - strand, within SO0057 at 65.342 kb on + strand, within SO0057 at 65.385 kb on + strand, within SO0057 at 65.391 kb on - strand, within SO0057 at 65.403 kb on + strand, within SO0057 at 65.627 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.649 kb on + strand at 65.649 kb on + strand at 65.660 kb on + strand at 65.670 kb on + strand at 65.672 kb on - strand at 65.678 kb on - strand at 65.693 kb on - strand at 65.693 kb on - strand at 65.693 kb on - strand at 65.712 kb on + strand at 65.737 kb on - strand, within SO0058 at 65.739 kb on - strand, within SO0058 at 65.798 kb on + strand, within SO0058 at 65.798 kb on + strand, within SO0058 at 65.830 kb on - strand, within SO0058 at 65.850 kb on + strand, within SO0058 at 65.868 kb on - strand, within SO0058 at 65.871 kb on + strand, within SO0058 at 65.953 kb on + strand, within SO0058 at 65.955 kb on + strand, within SO0058 at 65.960 kb on + strand, within SO0058 at 65.963 kb on - strand, within SO0058 at 65.984 kb on - strand, within SO0058 at 65.999 kb on + strand, within SO0058 at 66.049 kb on - strand, within SO0058 at 66.073 kb on - strand, within SO0058 at 66.110 kb on + strand, within SO0058 at 66.132 kb on + strand, within SO0058 at 66.151 kb on + strand, within SO0058 at 66.182 kb on - strand at 66.197 kb on - strand, within SO0058 at 66.288 kb on + strand, within SO0058 at 66.310 kb on + strand at 66.310 kb on + strand at 66.311 kb on - strand at 66.318 kb on - strand at 66.331 kb on + strand at 66.343 kb on - strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.398 kb on - strand at 66.398 kb on - strand at 66.412 kb on - strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.444 kb on - strand at 66.444 kb on - strand at 66.444 kb on - strand at 66.452 kb on + strand at 66.460 kb on + strand at 66.473 kb on + strand at 66.546 kb on + strand, within kdpE at 66.583 kb on - strand, within kdpE at 66.585 kb on - strand, within kdpE at 66.607 kb on - strand, within kdpE at 66.709 kb on - strand, within kdpE at 66.760 kb on - strand, within kdpE at 66.761 kb on - strand, within kdpE at 66.798 kb on + strand, within kdpE at 66.867 kb on + strand, within kdpE at 66.930 kb on + strand, within kdpE at 67.019 kb on - strand, within kdpE at 67.049 kb on - strand at 67.054 kb on + strand at 67.103 kb on - strand at 67.242 kb on - strand, within SO0060 at 67.273 kb on + strand, within SO0060 at 67.292 kb on + strand, within SO0060 at 67.293 kb on - strand, within SO0060 at 67.300 kb on - strand, within SO0060 at 67.310 kb on - strand, within SO0060 at 67.330 kb on - strand, within SO0060 at 67.331 kb on - strand, within SO0060 at 67.345 kb on + strand, within SO0060 at 67.352 kb on + strand, within SO0060 at 67.352 kb on + strand, within SO0060
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 64,676 + SO0057 0.28 +0.2 64,684 - SO0057 0.28 -0.4 64,684 - SO0057 0.28 -0.8 64,684 - SO0057 0.28 -0.4 64,752 - SO0057 0.33 -0.3 64,754 + SO0057 0.33 +0.9 64,762 - SO0057 0.34 -0.7 64,762 - SO0057 0.34 +0.0 64,811 + SO0057 0.38 -0.6 64,811 + SO0057 0.38 -1.0 64,819 + SO0057 0.38 +0.8 64,819 - SO0057 0.38 -0.9 64,869 - SO0057 0.42 -0.0 64,910 + SO0057 0.45 -0.2 64,918 + SO0057 0.45 -0.5 64,923 + SO0057 0.46 +0.7 64,928 + SO0057 0.46 +0.9 64,928 + SO0057 0.46 -0.1 64,936 - SO0057 0.47 +0.6 64,936 - SO0057 0.47 +0.3 65,002 - SO0057 0.52 +0.6 65,020 - SO0057 0.53 +0.3 65,099 + SO0057 0.59 -0.2 65,165 + SO0057 0.64 -0.2 65,220 - SO0057 0.68 -0.2 65,262 + SO0057 0.71 -1.1 65,333 + SO0057 0.76 +0.6 65,341 - SO0057 0.77 +0.2 65,342 + SO0057 0.77 -0.0 65,385 + SO0057 0.80 -0.5 65,391 - SO0057 0.80 +0.3 65,403 + SO0057 0.81 -0.6 65,627 + +0.2 65,627 + +0.6 65,627 + +0.2 65,649 + -0.3 65,649 + +0.1 65,660 + +0.5 65,670 + -0.4 65,672 - +1.9 65,678 - -0.6 65,693 - +0.1 65,693 - -0.2 65,693 - +1.8 65,712 + +0.3 65,737 - SO0058 0.11 -0.8 65,739 - SO0058 0.11 +0.5 65,798 + SO0058 0.19 +0.0 65,798 + SO0058 0.19 +0.2 65,830 - SO0058 0.24 -0.9 65,850 + SO0058 0.27 +0.3 65,868 - SO0058 0.29 +0.0 65,871 + SO0058 0.30 -0.2 65,953 + SO0058 0.42 +0.3 65,955 + SO0058 0.42 -1.0 65,960 + SO0058 0.43 +0.9 65,963 - SO0058 0.43 -0.2 65,984 - SO0058 0.46 +0.1 65,999 + SO0058 0.48 -0.2 66,049 - SO0058 0.55 +0.6 66,073 - SO0058 0.59 +0.7 66,110 + SO0058 0.64 -0.0 66,132 + SO0058 0.67 -1.0 66,151 + SO0058 0.70 -0.3 66,182 - -0.0 66,197 - SO0058 0.77 +1.3 66,288 + SO0058 0.90 +0.1 66,310 + -0.8 66,310 + -0.6 66,311 - +0.6 66,318 - -0.1 66,331 + -0.7 66,343 - -0.9 66,390 + +0.0 66,390 + -0.3 66,390 + +0.1 66,390 + +0.1 66,390 + -0.8 66,390 + -0.0 66,390 + -1.0 66,398 - -0.8 66,398 - -0.5 66,412 - -0.3 66,436 + +0.2 66,436 + +0.0 66,436 + -0.7 66,436 + -1.2 66,444 - +0.2 66,444 - +0.2 66,444 - -0.3 66,452 + -0.4 66,460 + +0.3 66,473 + +0.3 66,546 + kdpE SO0059 0.20 -0.1 66,583 - kdpE SO0059 0.26 -1.3 66,585 - kdpE SO0059 0.26 -0.3 66,607 - kdpE SO0059 0.29 +1.1 66,709 - kdpE SO0059 0.44 +0.9 66,760 - kdpE SO0059 0.51 -1.3 66,761 - kdpE SO0059 0.51 -0.2 66,798 + kdpE SO0059 0.57 +1.0 66,867 + kdpE SO0059 0.67 -0.5 66,930 + kdpE SO0059 0.76 +0.3 67,019 - kdpE SO0059 0.89 -0.8 67,049 - -0.4 67,054 + -1.0 67,103 - -0.7 67,242 - SO0060 0.14 -1.7 67,273 + SO0060 0.17 -1.8 67,292 + SO0060 0.19 +0.0 67,293 - SO0060 0.19 -1.0 67,300 - SO0060 0.19 +1.3 67,310 - SO0060 0.20 -0.2 67,330 - SO0060 0.22 +0.3 67,331 - SO0060 0.22 +0.2 67,345 + SO0060 0.24 +0.6 67,352 + SO0060 0.24 -0.0 67,352 + SO0060 0.24 -0.0
Or see this region's nucleotide sequence