Strain Fitness in Shewanella amazonensis SB2B around Sama_3573

Experiment: 1-ethyl-3-methylimidazolium acetate 15 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium acetate 15 mM
4,208,690	-		Sama_3572	0.19	-0.5
4,208,734	+		Sama_3572	0.23	+0.5
4,208,734	+		Sama_3572	0.23	+0.5
4,208,734	+		Sama_3572	0.23	-1.0
4,208,735	-		Sama_3572	0.23	-0.1
4,208,735	-		Sama_3572	0.23	+0.2
4,208,798	+		Sama_3572	0.28	+0.3
4,208,798	+		Sama_3572	0.28	+0.2
4,208,798	+		Sama_3572	0.28	-1.2
4,208,799	-		Sama_3572	0.28	-0.4
4,208,801	+		Sama_3572	0.28	-0.1
4,208,802	-		Sama_3572	0.28	+2.1
4,208,956	+		Sama_3572	0.41	-0.5
4,208,956	+		Sama_3572	0.41	-0.7
4,208,957	-		Sama_3572	0.41	-0.6
4,208,961	+		Sama_3572	0.41	-0.5
4,208,961	+		Sama_3572	0.41	-0.5
4,208,986	+		Sama_3572	0.43	-0.9
4,208,986	+		Sama_3572	0.43	+0.2
4,208,987	-		Sama_3572	0.43	-2.2
4,208,999	-		Sama_3572	0.44	-0.2
4,208,999	-		Sama_3572	0.44	-1.1
4,209,004	+		Sama_3572	0.45	+0.0
4,209,004	+		Sama_3572	0.45	+0.6
4,209,005	-		Sama_3572	0.45	+1.3
4,209,005	-		Sama_3572	0.45	+0.0
4,209,016	-		Sama_3572	0.46	+0.8
4,209,018	+		Sama_3572	0.46	-0.8
4,209,019	-		Sama_3572	0.46	+0.2
4,209,035	+		Sama_3572	0.47	+0.1
4,209,121	-		Sama_3572	0.54	-0.3
4,209,126	+		Sama_3572	0.55	-0.1
4,209,126	+		Sama_3572	0.55	+1.3
4,209,127	-		Sama_3572	0.55	-0.3
4,209,131	+		Sama_3572	0.55	-0.0
4,209,131	+		Sama_3572	0.55	+0.2
4,209,132	-		Sama_3572	0.55	-0.7
4,209,132	-		Sama_3572	0.55	+0.3
4,209,132	-		Sama_3572	0.55	-0.0
4,209,132	-		Sama_3572	0.55	+0.2
4,209,162	+		Sama_3572	0.57	-0.1
4,209,187	+		Sama_3572	0.59	+0.8
4,209,256	-		Sama_3572	0.65	-0.5
4,209,265	+		Sama_3572	0.66	+0.1
4,209,266	-		Sama_3572	0.66	+0.9
4,209,293	+		Sama_3572	0.68	+0.1
4,209,293	+		Sama_3572	0.68	+0.6
4,209,294	-		Sama_3572	0.68	+1.8
4,209,294	-		Sama_3572	0.68	+0.0
4,209,294	-		Sama_3572	0.68	+0.5
4,209,294	-		Sama_3572	0.68	-0.6
4,209,362	+		Sama_3572	0.74	-0.3
4,209,363	-		Sama_3572	0.74	+0.4
4,209,386	-		Sama_3572	0.75	+0.7
4,209,402	+		Sama_3572	0.77	+0.3
4,209,402	+		Sama_3572	0.77	-0.1
4,209,445	+		Sama_3572	0.80	-1.3
4,209,445	+		Sama_3572	0.80	+0.6
4,209,446	-		Sama_3572	0.80	+0.0
4,209,446	-		Sama_3572	0.80	+0.7
4,209,468	+		Sama_3572	0.82	-2.5
4,209,552	+		Sama_3572	0.89	-0.1
4,209,552	+		Sama_3572	0.89	+1.7
4,209,552	+		Sama_3572	0.89	-0.5
4,209,552	+		Sama_3572	0.89	+0.9
4,209,552	+		Sama_3572	0.89	-0.2
4,209,553	-		Sama_3572	0.89	+0.6
4,209,553	-		Sama_3572	0.89	-0.5
4,209,553	-		Sama_3572	0.89	+0.6
4,209,553	-		Sama_3572	0.89	+0.1
4,209,583	+				+0.4
4,209,583	+				-1.6
4,209,584	-				+0.5
4,209,630	+				+0.2
4,209,631	-				-0.4
4,209,704	+				-0.1
4,209,705	-				+0.4
4,209,705	-				-0.9
4,209,804	+		Sama_3573	0.14	+0.3
4,209,804	+		Sama_3573	0.14	-0.7
4,209,890	+		Sama_3573	0.24	-0.3
4,209,890	+		Sama_3573	0.24	-1.2
4,209,891	-		Sama_3573	0.24	-0.2
4,209,891	-		Sama_3573	0.24	-0.5
4,209,891	-		Sama_3573	0.24	+0.3
4,209,893	-		Sama_3573	0.24	-0.1
4,209,950	+		Sama_3573	0.31	-0.1
4,209,950	+		Sama_3573	0.31	+0.5
4,209,950	+		Sama_3573	0.31	-1.2
4,209,950	+		Sama_3573	0.31	-1.2
4,209,951	-		Sama_3573	0.31	-1.3
4,209,951	-		Sama_3573	0.31	-0.4
4,209,951	-		Sama_3573	0.31	-0.1
4,209,951	-		Sama_3573	0.31	-0.1
4,209,951	-		Sama_3573	0.31	+1.3
4,210,082	-		Sama_3573	0.46	-1.2
4,210,088	+		Sama_3573	0.47	-0.1
4,210,089	-		Sama_3573	0.47	-0.6
4,210,208	-		Sama_3573	0.61	-0.5
4,210,255	+		Sama_3573	0.66	+0.1
4,210,261	+		Sama_3573	0.67	-0.3
4,210,262	-		Sama_3573	0.67	-0.2
4,210,279	+		Sama_3573	0.69	+0.4
4,210,280	-		Sama_3573	0.69	-0.8
4,210,280	-		Sama_3573	0.69	-0.7
4,210,298	+		Sama_3573	0.71	-1.1
4,210,298	+		Sama_3573	0.71	-0.1
4,210,299	-		Sama_3573	0.72	+0.6
4,210,373	+		Sama_3573	0.80	+0.2
4,210,374	-		Sama_3573	0.80	-0.9
4,210,388	+		Sama_3573	0.82	+0.3
4,210,388	+		Sama_3573	0.82	-1.2
4,210,388	+		Sama_3573	0.82	-0.5
4,210,388	+		Sama_3573	0.82	+0.1
4,210,389	-		Sama_3573	0.82	-0.5
4,210,581	+				-1.4
4,210,581	+				+0.7
4,210,582	-				-0.1
4,210,597	+		Sama_3574	0.12	-0.9
4,210,598	-		Sama_3574	0.12	-0.3
4,210,598	-		Sama_3574	0.12	+0.1
4,210,598	-		Sama_3574	0.12	+0.1
4,210,598	-		Sama_3574	0.12	+0.2
4,210,699	-		Sama_3574	0.40	+0.9
4,210,785	-		Sama_3574	0.63	+0.8
4,210,829	-		Sama_3574	0.74	-2.6
4,210,845	+		Sama_3574	0.79	+0.0
4,210,845	+		Sama_3574	0.79	-0.1
4,210,845	+		Sama_3574	0.79	-0.7
4,210,845	+		Sama_3574	0.79	+0.5
4,210,845	+		Sama_3574	0.79	-0.4
4,210,846	-		Sama_3574	0.79	-0.6
4,210,846	-		Sama_3574	0.79	+0.1
4,210,846	-		Sama_3574	0.79	+1.1
4,210,846	-		Sama_3574	0.79	-0.2
4,210,846	-		Sama_3574	0.79	-0.6
4,210,846	-		Sama_3574	0.79	-0.3
4,210,846	-		Sama_3574	0.79	-0.5
4,210,846	-		Sama_3574	0.79	+0.1
4,210,846	-		Sama_3574	0.79	-0.8
4,210,856	-		Sama_3574	0.82	-1.7
4,210,856	-		Sama_3574	0.82	-0.8
4,210,856	-		Sama_3574	0.82	+0.1
4,210,856	-		Sama_3574	0.82	+1.1
4,210,878	-		Sama_3574	0.88	+1.1
4,210,878	-		Sama_3574	0.88	+0.7
4,210,918	+				-0.0
4,210,918	+				+0.9
4,210,919	-				+0.5
4,210,919	-				+0.8
4,210,919	-				+0.9
4,210,919	-				-0.9
4,210,924	+				+1.6
4,210,924	+				-1.1
4,210,924	+				+0.8
4,210,925	-				-1.0
4,210,925	-				-0.1
4,210,925	-				+0.1
4,210,925	-				+1.1
4,210,967	+				+0.3
4,210,967	+				-0.2
4,210,968	-				+0.1
4,210,969	+				-0.4
4,210,969	+				-0.2
4,210,969	+				+0.4
4,210,970	-				+0.9
4,210,970	-				+0.3
4,210,970	-				+0.2
4,210,970	-				-0.2
4,210,970	-				-1.9
4,210,974	+				-0.2
4,210,974	+				+0.4
4,210,975	-				+0.7
4,211,005	+				-0.5
4,211,005	+				+0.0
4,211,005	+				-0.9
4,211,006	-				+1.0
4,211,006	-				+0.2
4,211,006	-				-0.7
4,211,012	+				-0.3
4,211,012	+				+0.5
4,211,012	+				-0.6
4,211,012	+				+0.6
4,211,012	+				-0.1
4,211,012	+				+0.1
4,211,012	+				-0.4
4,211,012	+				+1.0
4,211,013	-				-0.7
4,211,013	-				-0.8
4,211,013	-				-0.6
4,211,021	-				-1.5
4,211,021	-				-0.9
4,211,021	-				-0.5
4,211,021	-				-0.7
4,211,119	+				-0.9
4,211,119	+				-0.1
4,211,119	+				-0.2
4,211,119	+				+0.9
4,211,119	+				-0.6
4,211,120	-				+0.5
4,211,120	-				+0.4
4,211,120	-				+0.2
4,211,120	-				-0.4
4,211,120	-				-0.2
4,211,120	-				-0.3
4,211,120	-				-0.0
4,211,157	+				-0.4
4,211,158	-				+0.4
4,211,158	-				-0.5
4,211,170	+		Sama_3575	0.10	+0.2
4,211,170	+		Sama_3575	0.10	-0.5
4,211,171	-		Sama_3575	0.10	-0.2
4,211,239	+		Sama_3575	0.15	-0.3
4,211,239	+		Sama_3575	0.15	-0.3
4,211,239	+		Sama_3575	0.15	+0.5
4,211,239	+		Sama_3575	0.15	+0.7
4,211,239	+		Sama_3575	0.15	-0.2
4,211,240	-		Sama_3575	0.15	+0.7
4,211,240	-		Sama_3575	0.15	+0.5
4,211,243	+		Sama_3575	0.15	+1.1
4,211,243	+		Sama_3575	0.15	-0.9
4,211,244	-		Sama_3575	0.15	-0.5
4,211,244	-		Sama_3575	0.15	-0.3
4,211,244	-		Sama_3575	0.15	-0.3
4,211,250	+		Sama_3575	0.16	-0.6
4,211,250	+		Sama_3575	0.16	+0.3
4,211,250	+		Sama_3575	0.16	+0.9
4,211,250	+		Sama_3575	0.16	+0.4
4,211,251	-		Sama_3575	0.16	+0.4
4,211,352	-		Sama_3575	0.22	-0.3
4,211,352	-		Sama_3575	0.22	+0.4
4,211,352	-		Sama_3575	0.22	+0.3
4,211,352	-		Sama_3575	0.22	-0.6
4,211,352	-		Sama_3575	0.22	+0.1
4,211,389	+		Sama_3575	0.25	+0.5
4,211,389	+		Sama_3575	0.25	-0.3
4,211,389	+		Sama_3575	0.25	-0.6
4,211,389	+		Sama_3575	0.25	+1.1
4,211,389	+		Sama_3575	0.25	+0.2
4,211,389	+		Sama_3575	0.25	+0.1
4,211,389	+		Sama_3575	0.25	+0.2
4,211,389	+		Sama_3575	0.25	-1.2
4,211,389	+		Sama_3575	0.25	+0.8
4,211,389	+		Sama_3575	0.25	+0.4
4,211,390	-		Sama_3575	0.25	-0.6
4,211,390	-		Sama_3575	0.25	+0.4
4,211,390	-		Sama_3575	0.25	-0.1
4,211,390	-		Sama_3575	0.25	-0.1
4,211,390	-		Sama_3575	0.25	+0.0
4,211,390	-		Sama_3575	0.25	-0.2
4,211,390	-		Sama_3575	0.25	-0.4
4,211,390	-		Sama_3575	0.25	+0.0
4,211,532	-		Sama_3575	0.34	-0.5