Experiment: acetate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0557 and Sama_0558 are separated by 120 nucleotides Sama_0558 and Sama_0559 are separated by 121 nucleotides
Sama_0557: Sama_0557 - no description, at 693,039 to 693,530
_0557
Sama_0558: Sama_0558 - hypothetical protein (RefSeq), at 693,651 to 694,433
_0558
Sama_0559: Sama_0559 - hypothetical protein (RefSeq), at 694,555 to 695,007
_0559
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 692.656 kb on + strand at 692.669 kb on + strand at 692.669 kb on + strand at 692.669 kb on + strand at 692.670 kb on - strand at 692.670 kb on - strand at 692.697 kb on + strand at 692.705 kb on + strand at 692.705 kb on + strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.769 kb on + strand at 692.769 kb on + strand at 692.769 kb on + strand at 692.796 kb on + strand at 692.796 kb on + strand at 692.822 kb on + strand at 692.918 kb on + strand at 692.918 kb on + strand at 692.918 kb on + strand at 692.926 kb on + strand at 692.927 kb on - strand at 692.931 kb on + strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.936 kb on - strand at 692.936 kb on - strand at 693.008 kb on + strand at 693.008 kb on + strand at 693.011 kb on + strand at 693.011 kb on + strand at 693.011 kb on + strand at 693.012 kb on - strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.058 kb on + strand at 693.059 kb on - strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.089 kb on + strand, within Sama_0557 at 693.089 kb on + strand, within Sama_0557 at 693.089 kb on + strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.109 kb on + strand, within Sama_0557 at 693.109 kb on + strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.123 kb on + strand, within Sama_0557 at 693.124 kb on - strand, within Sama_0557 at 693.136 kb on + strand, within Sama_0557 at 693.137 kb on - strand, within Sama_0557 at 693.243 kb on + strand, within Sama_0557 at 693.244 kb on - strand, within Sama_0557 at 693.271 kb on - strand, within Sama_0557 at 693.297 kb on + strand, within Sama_0557 at 693.372 kb on + strand, within Sama_0557 at 693.373 kb on - strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.428 kb on - strand, within Sama_0557 at 693.428 kb on - strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.438 kb on - strand, within Sama_0557 at 693.438 kb on - strand, within Sama_0557 at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.528 kb on + strand at 693.529 kb on - strand at 693.530 kb on + strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.548 kb on + strand at 693.549 kb on - strand at 693.618 kb on - strand at 693.618 kb on - strand at 693.633 kb on + strand at 693.633 kb on + strand at 693.634 kb on - strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.637 kb on - strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.666 kb on - strand at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.752 kb on - strand, within Sama_0558 at 693.871 kb on + strand, within Sama_0558 at 693.945 kb on + strand, within Sama_0558 at 693.946 kb on - strand, within Sama_0558 at 693.989 kb on - strand, within Sama_0558 at 693.994 kb on + strand, within Sama_0558 at 693.995 kb on - strand, within Sama_0558 at 694.006 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.217 kb on + strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.233 kb on + strand, within Sama_0558 at 694.234 kb on - strand, within Sama_0558 at 694.252 kb on + strand, within Sama_0558 at 694.253 kb on - strand, within Sama_0558 at 694.368 kb on - strand at 694.403 kb on - strand at 694.403 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.556 kb on + strand at 694.556 kb on + strand at 694.557 kb on - strand at 694.568 kb on + strand at 694.602 kb on + strand, within Sama_0559 at 694.602 kb on + strand, within Sama_0559 at 694.603 kb on - strand, within Sama_0559 at 694.603 kb on - strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.633 kb on + strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.634 kb on - strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.637 kb on + strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.638 kb on - strand, within Sama_0559 at 694.716 kb on + strand, within Sama_0559 at 694.749 kb on - strand, within Sama_0559 at 694.796 kb on + strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.797 kb on - strand, within Sama_0559 at 694.864 kb on + strand, within Sama_0559 at 694.865 kb on - strand, within Sama_0559 at 694.916 kb on - strand, within Sama_0559 at 694.963 kb on - strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.970 kb on + strand at 694.971 kb on - strand at 694.971 kb on - strand at 694.981 kb on - strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.982 kb on + strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 694.983 kb on - strand at 695.055 kb on + strand at 695.056 kb on - strand at 695.056 kb on - strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.061 kb on + strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.062 kb on - strand at 695.166 kb on + strand at 695.187 kb on + strand at 695.188 kb on - strand at 695.198 kb on - strand at 695.277 kb on + strand at 695.277 kb on + strand at 695.277 kb on + strand at 695.278 kb on - strand at 695.281 kb on + strand at 695.282 kb on - strand at 695.320 kb on + strand at 695.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate 25 mM remove 692,656 + -0.6 692,669 + -0.7 692,669 + +0.1 692,669 + -0.0 692,670 - -0.6 692,670 - +0.1 692,697 + -0.2 692,705 + +0.6 692,705 + +0.4 692,706 - +0.0 692,706 - -0.2 692,706 - -0.0 692,706 - +0.3 692,769 + +0.5 692,769 + -0.6 692,769 + +0.7 692,796 + -0.6 692,796 + +0.1 692,822 + -0.2 692,918 + -0.7 692,918 + -0.2 692,918 + +0.3 692,926 + -0.4 692,927 - -1.6 692,931 + -0.3 692,932 - -1.4 692,932 - -1.5 692,932 - -0.0 692,932 - -1.0 692,936 - -0.9 692,936 - +0.6 693,008 + +0.4 693,008 + -0.3 693,011 + -0.9 693,011 + -0.4 693,011 + -0.1 693,012 - +0.5 693,040 + +0.0 693,040 + -1.3 693,040 + +1.0 693,040 + +0.5 693,040 + +0.3 693,040 + -0.6 693,041 - -0.0 693,041 - +0.1 693,041 - +0.3 693,041 - -0.8 693,058 + -0.5 693,059 - +0.4 693,076 + -0.2 693,076 + -0.0 693,076 + +0.1 693,076 + +1.1 693,076 + +0.5 693,076 + -0.3 693,076 + +1.0 693,076 + -0.7 693,076 + -2.0 693,076 + -1.4 693,077 - +0.1 693,077 - -1.0 693,077 - +0.7 693,077 - -1.0 693,089 + Sama_0557 0.10 +0.3 693,089 + Sama_0557 0.10 +2.0 693,089 + Sama_0557 0.10 +0.7 693,090 - Sama_0557 0.10 -1.0 693,090 - Sama_0557 0.10 -0.5 693,090 - Sama_0557 0.10 +1.0 693,090 - Sama_0557 0.10 -0.0 693,090 - Sama_0557 0.10 -0.3 693,090 - Sama_0557 0.10 -0.6 693,090 - Sama_0557 0.10 -1.2 693,090 - Sama_0557 0.10 -0.6 693,109 + Sama_0557 0.14 +1.4 693,109 + Sama_0557 0.14 +0.4 693,110 - Sama_0557 0.14 -0.6 693,110 - Sama_0557 0.14 +0.1 693,110 - Sama_0557 0.14 -2.0 693,110 - Sama_0557 0.14 -1.2 693,110 - Sama_0557 0.14 -0.3 693,123 + Sama_0557 0.17 -0.5 693,124 - Sama_0557 0.17 +0.4 693,136 + Sama_0557 0.20 +0.5 693,137 - Sama_0557 0.20 -0.3 693,243 + Sama_0557 0.41 -2.0 693,244 - Sama_0557 0.42 -0.6 693,271 - Sama_0557 0.47 -1.1 693,297 + Sama_0557 0.52 -1.1 693,372 + Sama_0557 0.68 +0.4 693,373 - Sama_0557 0.68 -0.5 693,402 + Sama_0557 0.74 +0.9 693,402 + Sama_0557 0.74 -1.0 693,402 + Sama_0557 0.74 +2.5 693,428 - Sama_0557 0.79 -2.4 693,428 - Sama_0557 0.79 -0.5 693,435 + Sama_0557 0.80 -0.7 693,435 + Sama_0557 0.80 -0.2 693,435 + Sama_0557 0.80 -0.2 693,436 - Sama_0557 0.81 +1.1 693,436 - Sama_0557 0.81 -1.0 693,436 - Sama_0557 0.81 -0.9 693,438 - Sama_0557 0.81 -0.5 693,438 - Sama_0557 0.81 -0.7 693,485 + +0.2 693,485 + +0.8 693,485 + +0.4 693,485 + +0.1 693,485 + +0.1 693,485 + +0.8 693,485 + -0.0 693,485 + +0.2 693,486 - +0.6 693,486 - -2.1 693,486 - -0.0 693,486 - +0.8 693,486 - -0.0 693,528 + +1.4 693,529 - -0.6 693,530 + +0.3 693,531 - -0.9 693,531 - +1.0 693,531 - +0.2 693,531 - -1.1 693,531 - -0.6 693,531 - +0.2 693,531 - -1.9 693,548 + +0.7 693,549 - +0.9 693,618 - -0.4 693,618 - +0.1 693,633 + +1.5 693,633 + +0.5 693,634 - -0.6 693,636 + -3.6 693,636 + +1.3 693,636 + -0.4 693,637 - +0.1 693,662 + -0.0 693,662 + -0.6 693,662 + +0.8 693,662 + +0.3 693,663 - -0.5 693,663 - -0.2 693,663 - -0.9 693,663 - -0.0 693,663 - +0.3 693,663 - +0.6 693,666 - +0.1 693,740 + Sama_0558 0.11 -0.4 693,740 + Sama_0558 0.11 +1.2 693,740 + Sama_0558 0.11 -0.6 693,740 + Sama_0558 0.11 +1.4 693,740 + Sama_0558 0.11 -0.0 693,741 - Sama_0558 0.11 +0.5 693,741 - Sama_0558 0.11 +0.3 693,741 - Sama_0558 0.11 -0.5 693,741 - Sama_0558 0.11 +0.3 693,741 - Sama_0558 0.11 +1.0 693,741 - Sama_0558 0.11 +1.0 693,741 - Sama_0558 0.11 +0.2 693,741 - Sama_0558 0.11 +0.1 693,752 - Sama_0558 0.13 -0.6 693,871 + Sama_0558 0.28 -0.5 693,945 + Sama_0558 0.38 +1.8 693,946 - Sama_0558 0.38 -0.0 693,989 - Sama_0558 0.43 +0.3 693,994 + Sama_0558 0.44 +0.1 693,995 - Sama_0558 0.44 -0.0 694,006 + Sama_0558 0.45 -0.0 694,012 + Sama_0558 0.46 -1.6 694,012 + Sama_0558 0.46 -0.1 694,012 + Sama_0558 0.46 -0.5 694,012 + Sama_0558 0.46 +0.2 694,012 + Sama_0558 0.46 -1.8 694,012 + Sama_0558 0.46 +0.9 694,012 + Sama_0558 0.46 +1.2 694,013 - Sama_0558 0.46 -1.1 694,013 - Sama_0558 0.46 +0.5 694,013 - Sama_0558 0.46 -0.3 694,013 - Sama_0558 0.46 +0.1 694,030 + Sama_0558 0.48 -0.5 694,030 + Sama_0558 0.48 +0.3 694,031 - Sama_0558 0.49 +1.0 694,031 - Sama_0558 0.49 -0.8 694,031 - Sama_0558 0.49 -2.4 694,031 - Sama_0558 0.49 +1.0 694,091 - Sama_0558 0.56 -0.4 694,091 - Sama_0558 0.56 +0.1 694,132 + Sama_0558 0.61 -0.6 694,132 + Sama_0558 0.61 +0.4 694,133 - Sama_0558 0.62 -1.0 694,133 - Sama_0558 0.62 +0.6 694,133 - Sama_0558 0.62 +0.3 694,217 + Sama_0558 0.72 +0.7 694,218 - Sama_0558 0.72 +0.6 694,218 - Sama_0558 0.72 -0.6 694,233 + Sama_0558 0.74 +0.6 694,234 - Sama_0558 0.74 -0.0 694,252 + Sama_0558 0.77 -0.0 694,253 - Sama_0558 0.77 +0.1 694,368 - -0.6 694,403 - +1.0 694,403 - -0.0 694,470 - -0.4 694,470 - +0.5 694,470 - -0.0 694,470 - +1.0 694,556 + +0.2 694,556 + -0.1 694,557 - +0.7 694,568 + +1.3 694,602 + Sama_0559 0.10 +2.0 694,602 + Sama_0559 0.10 +0.2 694,603 - Sama_0559 0.11 +1.0 694,603 - Sama_0559 0.11 +0.1 694,633 + Sama_0559 0.17 -0.8 694,633 + Sama_0559 0.17 -0.2 694,633 + Sama_0559 0.17 -0.0 694,633 + Sama_0559 0.17 -1.4 694,634 - Sama_0559 0.17 +1.6 694,634 - Sama_0559 0.17 -0.0 694,634 - Sama_0559 0.17 -0.4 694,634 - Sama_0559 0.17 -1.4 694,634 - Sama_0559 0.17 -0.9 694,637 + Sama_0559 0.18 -1.4 694,637 + Sama_0559 0.18 -0.6 694,637 + Sama_0559 0.18 +0.2 694,638 - Sama_0559 0.18 +0.6 694,638 - Sama_0559 0.18 -0.2 694,638 - Sama_0559 0.18 +1.0 694,638 - Sama_0559 0.18 +0.8 694,716 + Sama_0559 0.36 +0.3 694,749 - Sama_0559 0.43 -1.3 694,796 + Sama_0559 0.53 +2.0 694,797 - Sama_0559 0.53 -1.1 694,797 - Sama_0559 0.53 +0.4 694,797 - Sama_0559 0.53 -0.3 694,864 + Sama_0559 0.68 +0.6 694,865 - Sama_0559 0.68 +0.3 694,916 - Sama_0559 0.80 -0.3 694,963 - +0.2 694,970 + +1.0 694,970 + -0.2 694,970 + +0.1 694,970 + -0.7 694,971 - +0.1 694,971 - -0.3 694,981 - +0.5 694,982 + +2.4 694,982 + -0.3 694,982 + +0.7 694,982 + -0.6 694,982 + +1.0 694,982 + -0.6 694,983 - -0.6 694,983 - -1.4 694,983 - -0.3 694,983 - +2.0 694,983 - -0.5 694,983 - +0.0 694,983 - +0.2 695,055 + +0.2 695,056 - -0.1 695,056 - +0.2 695,061 + -0.0 695,061 + +0.2 695,061 + +0.1 695,061 + -0.0 695,061 + -0.3 695,061 + +0.1 695,061 + -0.3 695,061 + -0.7 695,061 + -0.2 695,061 + -2.7 695,062 - -0.4 695,062 - -0.5 695,062 - +0.1 695,062 - +0.5 695,062 - +0.4 695,062 - +0.4 695,062 - -0.0 695,062 - +0.6 695,062 - -1.2 695,166 + -1.1 695,187 + +1.6 695,188 - -0.0 695,198 - -0.0 695,277 + +0.5 695,277 + +0.3 695,277 + +0.5 695,278 - -0.9 695,281 + +0.6 695,282 - -0.3 695,320 + +0.2 695,358 + -1.0
Or see this region's nucleotide sequence