Strain Fitness in Shewanella amazonensis SB2B around Sama_0861

Experiment: Cholin acetate 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholin acetate 25 mM
1,050,171	+				+1.2
1,050,171	+				+0.0
1,050,172	-				-0.2
1,050,188	+				-0.8
1,050,251	+				-0.2
1,050,251	+				-1.5
1,050,254	+				-0.4
1,050,255	-				-1.8
1,050,255	-				-2.0
1,050,269	+		Sama_0860	0.10	-2.9
1,050,287	-		Sama_0860	0.12	+0.8
1,050,303	+		Sama_0860	0.14	-2.3
1,050,303	+		Sama_0860	0.14	-0.8
1,050,303	+		Sama_0860	0.14	-1.6
1,050,304	-		Sama_0860	0.14	-2.2
1,050,304	-		Sama_0860	0.14	-2.0
1,050,304	-		Sama_0860	0.14	-0.2
1,050,304	-		Sama_0860	0.14	-1.2
1,050,304	-		Sama_0860	0.14	-1.5
1,050,307	+		Sama_0860	0.14	-0.8
1,050,307	+		Sama_0860	0.14	-1.5
1,050,307	+		Sama_0860	0.14	-0.8
1,050,307	+		Sama_0860	0.14	-2.0
1,050,307	+		Sama_0860	0.14	-2.0
1,050,307	+		Sama_0860	0.14	-2.3
1,050,307	+		Sama_0860	0.14	-2.3
1,050,307	+		Sama_0860	0.14	-0.8
1,050,308	-		Sama_0860	0.15	-0.4
1,050,308	-		Sama_0860	0.15	-3.6
1,050,308	-		Sama_0860	0.15	-1.5
1,050,308	-		Sama_0860	0.15	-2.8
1,050,308	-		Sama_0860	0.15	-1.2
1,050,308	-		Sama_0860	0.15	-2.5
1,050,308	-		Sama_0860	0.15	-2.6
1,050,337	+		Sama_0860	0.17	-1.5
1,050,338	-		Sama_0860	0.18	-1.2
1,050,388	+		Sama_0860	0.23	-0.5
1,050,388	+		Sama_0860	0.23	-1.2
1,050,389	-		Sama_0860	0.23	-2.9
1,050,389	-		Sama_0860	0.23	-0.2
1,050,389	-		Sama_0860	0.23	-0.2
1,050,389	-		Sama_0860	0.23	-2.9
1,050,397	+		Sama_0860	0.24	-2.8
1,050,397	+		Sama_0860	0.24	-0.5
1,050,397	+		Sama_0860	0.24	-2.0
1,050,398	-		Sama_0860	0.24	-2.2
1,050,398	-		Sama_0860	0.24	-2.2
1,050,398	-		Sama_0860	0.24	-1.9
1,050,534	+		Sama_0860	0.38	-1.2
1,050,535	-		Sama_0860	0.38	-2.3
1,050,581	+		Sama_0860	0.43	-2.5
1,050,594	+		Sama_0860	0.44	-1.8
1,050,594	+		Sama_0860	0.44	-1.5
1,050,594	+		Sama_0860	0.44	+0.3
1,050,594	+		Sama_0860	0.44	-0.2
1,050,594	+		Sama_0860	0.44	+0.8
1,050,595	-		Sama_0860	0.44	-1.2
1,050,595	-		Sama_0860	0.44	-0.5
1,050,595	-		Sama_0860	0.44	-1.5
1,050,595	-		Sama_0860	0.44	-1.0
1,050,597	+		Sama_0860	0.44	-1.5
1,050,597	+		Sama_0860	0.44	-1.0
1,050,597	+		Sama_0860	0.44	-0.5
1,050,597	+		Sama_0860	0.44	-2.6
1,050,597	+		Sama_0860	0.44	-0.8
1,050,598	-		Sama_0860	0.44	-2.2
1,050,598	-		Sama_0860	0.44	-2.2
1,050,598	-		Sama_0860	0.44	-0.2
1,050,598	-		Sama_0860	0.44	-0.2
1,050,598	-		Sama_0860	0.44	-2.0
1,050,660	+		Sama_0860	0.51	-2.6
1,050,660	+		Sama_0860	0.51	-1.5
1,050,660	+		Sama_0860	0.51	-1.8
1,050,661	-		Sama_0860	0.51	+0.8
1,050,661	-		Sama_0860	0.51	-1.5
1,050,685	+		Sama_0860	0.53	-2.3
1,050,686	-		Sama_0860	0.53	-1.5
1,050,829	+		Sama_0860	0.68	-1.8
1,050,829	+		Sama_0860	0.68	-1.2
1,050,829	+		Sama_0860	0.68	-0.8
1,050,829	+		Sama_0860	0.68	+0.8
1,050,829	+		Sama_0860	0.68	-0.2
1,050,830	-		Sama_0860	0.68	+0.8
1,050,830	-		Sama_0860	0.68	-2.0
1,050,830	-		Sama_0860	0.68	-1.8
1,050,881	-		Sama_0860	0.73	-1.6
1,050,881	-		Sama_0860	0.73	-1.2
1,050,925	-		Sama_0860	0.78	-0.2
1,050,925	-		Sama_0860	0.78	-1.2
1,050,931	+		Sama_0860	0.79	-0.8
1,050,931	+		Sama_0860	0.79	-1.8
1,051,038	+		Sama_0860	0.90	+0.8
1,051,038	+		Sama_0860	0.90	-0.2
1,051,038	+		Sama_0860	0.90	-1.5
1,051,038	+		Sama_0860	0.90	-2.0
1,051,038	+		Sama_0860	0.90	-2.0
1,051,038	+		Sama_0860	0.90	-2.0
1,051,038	+		Sama_0860	0.90	-0.8
1,051,038	+		Sama_0860	0.90	-1.2
1,051,039	-		Sama_0860	0.90	-2.3
1,051,039	-		Sama_0860	0.90	-2.0
1,051,039	-		Sama_0860	0.90	+0.8
1,051,039	-		Sama_0860	0.90	+0.2
1,051,039	-		Sama_0860	0.90	-2.2
1,051,039	-		Sama_0860	0.90	-2.0
1,051,039	-		Sama_0860	0.90	-1.0
1,051,170	-				+0.1
1,051,218	+				-0.8
1,051,218	+				-0.5
1,051,218	+				-0.8
1,051,218	+				-0.2
1,051,218	+				-0.3
1,051,219	-				-0.8
1,051,232	-				-0.8
1,051,256	+				-0.8
1,051,256	+				+0.8
1,051,361	-		Sama_0861	0.18	+2.4
1,051,361	-		Sama_0861	0.18	-1.0
1,051,361	-		Sama_0861	0.18	+0.2
1,051,412	-		Sama_0861	0.23	-1.8
1,051,460	+		Sama_0861	0.27	-1.2
1,051,460	+		Sama_0861	0.27	-0.2
1,051,461	-		Sama_0861	0.27	-0.6
1,051,461	-		Sama_0861	0.27	-0.2
1,051,514	+		Sama_0861	0.32	-0.0
1,051,514	+		Sama_0861	0.32	+0.8
1,051,514	+		Sama_0861	0.32	-0.2
1,051,514	+		Sama_0861	0.32	+0.8
1,051,514	+		Sama_0861	0.32	-1.2
1,051,514	+		Sama_0861	0.32	+1.6
1,051,514	+		Sama_0861	0.32	-0.8
1,051,514	+		Sama_0861	0.32	+0.5
1,051,515	-		Sama_0861	0.32	-0.2
1,051,515	-		Sama_0861	0.32	-0.6
1,051,515	-		Sama_0861	0.32	+0.1
1,051,515	-		Sama_0861	0.32	+1.4
1,051,515	-		Sama_0861	0.32	-0.3
1,051,586	+		Sama_0861	0.39	+0.3
1,051,586	+		Sama_0861	0.39	-2.9
1,051,586	+		Sama_0861	0.39	-0.1
1,051,586	+		Sama_0861	0.39	+0.8
1,051,587	-		Sama_0861	0.39	+0.8
1,051,587	-		Sama_0861	0.39	-1.5
1,051,592	+		Sama_0861	0.39	+0.5
1,051,593	-		Sama_0861	0.39	-0.6
1,051,650	+		Sama_0861	0.45	+0.5
1,051,651	-		Sama_0861	0.45	+0.8
1,051,715	+		Sama_0861	0.51	-0.3
1,051,723	+		Sama_0861	0.52	-0.2
1,051,723	+		Sama_0861	0.52	+1.2
1,051,736	+		Sama_0861	0.53	+0.8
1,051,737	-		Sama_0861	0.53	+1.1
1,051,737	-		Sama_0861	0.53	-0.0
1,051,751	+		Sama_0861	0.54	-1.5
1,051,751	+		Sama_0861	0.54	-0.9
1,051,751	+		Sama_0861	0.54	+1.1
1,051,752	-		Sama_0861	0.54	+0.1
1,051,767	+		Sama_0861	0.56	+0.8
1,051,844	+		Sama_0861	0.63	+0.0
1,051,874	+		Sama_0861	0.66	+1.3
1,051,874	+		Sama_0861	0.66	-0.8
1,051,875	-		Sama_0861	0.66	-1.2
1,051,879	+		Sama_0861	0.66	-0.2
1,051,879	+		Sama_0861	0.66	-0.9
1,051,880	-		Sama_0861	0.66	+0.1
1,051,880	-		Sama_0861	0.66	+0.0
1,051,935	+		Sama_0861	0.71	-0.4
1,051,936	-		Sama_0861	0.71	+1.0
1,051,936	-		Sama_0861	0.71	+1.8
1,051,936	-		Sama_0861	0.71	-1.8
1,051,936	-		Sama_0861	0.71	-0.3
1,051,936	-		Sama_0861	0.71	-0.5
1,051,953	+		Sama_0861	0.73	-1.2
1,051,953	+		Sama_0861	0.73	-0.5
1,051,954	-		Sama_0861	0.73	-0.8
1,051,954	-		Sama_0861	0.73	+0.2
1,051,954	-		Sama_0861	0.73	-0.2
1,051,955	+		Sama_0861	0.73	-0.4
1,051,955	+		Sama_0861	0.73	+0.5
1,051,955	+		Sama_0861	0.73	-1.0
1,051,955	+		Sama_0861	0.73	-0.2
1,051,956	-		Sama_0861	0.73	-0.9
1,051,956	-		Sama_0861	0.73	-0.0
1,051,956	-		Sama_0861	0.73	-0.7
1,051,956	-		Sama_0861	0.73	-0.2
1,052,015	+		Sama_0861	0.79	-0.5
1,052,029	-		Sama_0861	0.80	+2.4
1,052,056	-		Sama_0861	0.82	-0.1
1,052,093	+		Sama_0861	0.86	-0.9
1,052,093	+		Sama_0861	0.86	-1.8
1,052,094	-		Sama_0861	0.86	-0.2
1,052,094	-		Sama_0861	0.86	+0.4
1,052,094	-		Sama_0861	0.86	-0.5
1,052,276	-				-1.3
1,052,289	+				-0.8
1,052,289	+				-0.0
1,052,289	+				+0.6
1,052,290	-				-0.4
1,052,290	-				+0.8
1,052,290	-				-1.7
1,052,290	-				+0.1
1,052,290	-				-1.2
1,052,294	+				-0.8
1,052,294	+				+0.1
1,052,294	+				-0.2
1,052,294	+				+0.5
1,052,294	+				-0.8
1,052,294	+				-1.6
1,052,295	-				-1.5
1,052,295	-				-0.6
1,052,295	-				+2.4
1,052,295	-				-0.3
1,052,297	-				+0.1
1,052,305	+				+0.8
1,052,305	+				-0.9
1,052,306	-				+0.4
1,052,368	-				+0.5
1,052,390	+				+1.6
1,052,391	-				+0.3
1,052,418	+				+0.0
1,052,418	+				+2.6
1,052,418	+				-0.2
1,052,419	-				-0.4
1,052,461	+		Sama_0862	0.14	+0.1
1,052,461	+		Sama_0862	0.14	-0.3
1,052,462	-		Sama_0862	0.14	+0.5
1,052,462	-		Sama_0862	0.14	+0.5
1,052,510	+		Sama_0862	0.21	-0.8
1,052,510	+		Sama_0862	0.21	-0.1
1,052,510	+		Sama_0862	0.21	-0.4
1,052,510	+		Sama_0862	0.21	-0.0
1,052,511	-		Sama_0862	0.21	+0.5
1,052,511	-		Sama_0862	0.21	+0.0
1,052,549	-		Sama_0862	0.27	-0.2
1,052,629	+		Sama_0862	0.39	+0.2
1,052,639	+		Sama_0862	0.40	-2.0
1,052,714	+		Sama_0862	0.52	-0.6
1,052,715	-		Sama_0862	0.52	+0.1
1,052,746	+		Sama_0862	0.56	-0.0
1,052,772	+		Sama_0862	0.60	+1.0
1,052,772	+		Sama_0862	0.60	-1.2
1,052,772	+		Sama_0862	0.60	+0.1
1,052,772	+		Sama_0862	0.60	+1.2
1,052,772	+		Sama_0862	0.60	+0.3
1,052,772	+		Sama_0862	0.60	-2.3
1,052,772	+		Sama_0862	0.60	-0.9
1,052,772	+		Sama_0862	0.60	+0.2
1,052,772	+		Sama_0862	0.60	+0.0
1,052,772	+		Sama_0862	0.60	+0.2
1,052,772	+		Sama_0862	0.60	-1.0
1,052,772	+		Sama_0862	0.60	+0.1
1,052,772	+		Sama_0862	0.60	+0.6
1,052,772	+		Sama_0862	0.60	+0.5
1,052,772	+		Sama_0862	0.60	-1.2
1,052,772	+		Sama_0862	0.60	-0.5
1,052,772	+		Sama_0862	0.60	+0.0
1,052,772	+		Sama_0862	0.60	-1.2
1,052,772	+		Sama_0862	0.60	+0.2
1,052,772	+		Sama_0862	0.60	+0.1
1,052,772	+		Sama_0862	0.60	-0.2
1,052,772	+		Sama_0862	0.60	-0.3
1,052,772	+		Sama_0862	0.60	-0.5
1,052,772	+		Sama_0862	0.60	-0.5
1,052,773	-		Sama_0862	0.60	-0.4
1,052,773	-		Sama_0862	0.60	-2.5
1,052,773	-		Sama_0862	0.60	-1.5
1,052,773	-		Sama_0862	0.60	+0.3
1,052,773	-		Sama_0862	0.60	-0.5
1,052,773	-		Sama_0862	0.60	+0.1
1,052,773	-		Sama_0862	0.60	+1.0
1,052,773	-		Sama_0862	0.60	+1.8
1,052,773	-		Sama_0862	0.60	+1.0
1,052,773	-		Sama_0862	0.60	+0.8
1,052,773	-		Sama_0862	0.60	-1.8
1,052,773	-		Sama_0862	0.60	+0.8
1,052,773	-		Sama_0862	0.60	+0.0
1,052,773	-		Sama_0862	0.60	+0.1
1,052,773	-		Sama_0862	0.60	+1.0
1,052,773	-		Sama_0862	0.60	-0.5
1,052,773	-		Sama_0862	0.60	-0.3
1,052,773	-		Sama_0862	0.60	+0.8
1,052,773	-		Sama_0862	0.60	-0.5
1,052,773	-		Sama_0862	0.60	+0.8
1,052,889	-		Sama_0862	0.77	-0.2
1,052,889	-		Sama_0862	0.77	-0.2
1,052,889	-		Sama_0862	0.77	+0.8
1,052,901	-		Sama_0862	0.79	-0.3
1,053,124	-				+0.8
1,053,129	+				+0.2
1,053,133	+				-0.6
1,053,134	-				+0.3
1,053,175	-				-0.4
1,053,189	+				-0.3
1,053,189	+				-0.2
1,053,208	+				-0.4