Strain Fitness in Shewanella amazonensis SB2B around Sama_1798

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,189,469	+		Sama_1796	0.72	-2.4
2,189,482	-		Sama_1796	0.73	-2.2
2,189,554	+		Sama_1796	0.76	+0.4
2,189,554	+		Sama_1796	0.76	-0.6
2,189,555	-		Sama_1796	0.76	-2.6
2,189,555	-		Sama_1796	0.76	-0.6
2,189,679	+		Sama_1796	0.81	-1.2
2,189,721	-		Sama_1796	0.83	-3.0
2,189,721	-		Sama_1796	0.83	-1.9
2,189,729	+		Sama_1796	0.83	-2.2
2,189,729	+		Sama_1796	0.83	-0.2
2,189,729	+		Sama_1796	0.83	-2.9
2,189,802	+		Sama_1796	0.86	-1.6
2,189,803	-		Sama_1796	0.86	-1.7
2,189,820	+		Sama_1796	0.87	+0.4
2,189,904	+				-3.8
2,189,905	-				-1.2
2,189,905	-				-0.9
2,189,949	+				-0.9
2,189,950	-				-1.6
2,189,972	+				-3.0
2,189,973	-				-0.6
2,190,005	-				-0.9
2,190,009	+				-1.9
2,190,009	+				-1.2
2,190,009	+				-1.2
2,190,010	-				-2.6
2,190,010	-				-0.6
2,190,010	-				-1.2
2,190,047	+				-2.2
2,190,052	+				-3.2
2,190,052	+				-2.2
2,190,052	+				-2.4
2,190,065	+				-2.4
2,190,113	+				-0.6
2,190,123	-				-0.9
2,190,134	+				-2.5
2,190,134	+				-1.2
2,190,134	+				-0.6
2,190,134	+				-0.3
2,190,134	+				+1.0
2,190,135	-				-1.4
2,190,141	+				-1.0
2,190,141	+				-2.7
2,190,141	+				-0.6
2,190,142	-				-2.2
2,190,142	-				-0.2
2,190,229	+		Sama_1797	0.50	-2.4
2,190,229	+		Sama_1797	0.50	-1.9
2,190,230	-		Sama_1797	0.50	-1.6
2,190,273	-		Sama_1797	0.72	-1.2
2,190,488	+		Sama_1798	0.23	-1.6
2,190,488	+		Sama_1798	0.23	-0.8
2,190,488	+		Sama_1798	0.23	-3.0
2,190,494	-		Sama_1798	0.24	-0.2
2,190,512	+		Sama_1798	0.26	-0.2
2,190,512	+		Sama_1798	0.26	-0.2
2,190,513	-		Sama_1798	0.27	-0.6
2,190,513	-		Sama_1798	0.27	-1.2
2,190,555	+		Sama_1798	0.33	-1.2
2,190,556	-		Sama_1798	0.33	-2.2
2,190,583	+		Sama_1798	0.37	-2.2
2,190,584	-		Sama_1798	0.37	-1.6
2,190,635	+		Sama_1798	0.44	-0.6
2,190,635	+		Sama_1798	0.44	+1.4
2,190,635	+		Sama_1798	0.44	-2.2
2,190,636	-		Sama_1798	0.44	-1.6
2,190,636	-		Sama_1798	0.44	-1.4
2,190,636	-		Sama_1798	0.44	-1.2
2,190,636	-		Sama_1798	0.44	-1.4
2,190,636	-		Sama_1798	0.44	-2.6
2,190,636	-		Sama_1798	0.44	-0.2
2,190,699	+		Sama_1798	0.53	-3.0
2,190,700	-		Sama_1798	0.54	-1.9
2,190,768	+		Sama_1798	0.63	-1.6
2,190,797	+		Sama_1798	0.68	-0.6
2,190,850	+		Sama_1798	0.75	-0.2
2,190,851	-		Sama_1798	0.75	-0.6
2,190,851	-		Sama_1798	0.75	-1.9
2,190,930	+		Sama_1798	0.87	-2.2
2,190,930	+		Sama_1798	0.87	+0.4
2,190,930	+		Sama_1798	0.87	-1.6
2,190,930	+		Sama_1798	0.87	-0.8
2,190,972	+				-1.2
2,190,973	-				-1.6
2,190,993	+				-1.9
2,190,993	+				-2.4
2,190,995	+				-0.9
2,190,995	+				-0.2
2,190,995	+				-0.8
2,190,995	+				-0.6
2,190,995	+				-0.5
2,190,996	-				-0.6
2,190,996	-				-0.9
2,190,996	-				-3.0
2,190,996	-				+0.4
2,190,996	-				-1.6
2,190,996	-				+0.8
2,190,996	-				+0.1
2,190,996	-				+0.4
2,190,996	-				-2.2
2,190,996	-				-0.4
2,190,997	+				-1.9
2,190,997	+				-0.9
2,190,997	+				-2.2
2,190,997	+				-1.7
2,190,997	+				-0.9
2,190,997	+				-2.7
2,190,997	+				-1.9
2,190,997	+				-1.9
2,190,998	-				-2.7
2,190,998	-				-1.6
2,190,998	-				-1.9
2,190,998	-				-0.6
2,190,998	-				-2.6
2,191,049	+				+0.1
2,191,054	-				+0.4
2,191,147	-				-0.8
2,191,164	+		Sama_1799	0.11	-0.6
2,191,165	-		Sama_1799	0.12	-0.6
2,191,206	+		Sama_1799	0.17	-1.9
2,191,209	+		Sama_1799	0.17	+0.4
2,191,212	+		Sama_1799	0.18	+0.7
2,191,305	+		Sama_1799	0.30	-0.6
2,191,313	-		Sama_1799	0.31	-1.6
2,191,387	-		Sama_1799	0.41	+0.4
2,191,459	-		Sama_1799	0.51	-1.2
2,191,677	-		Sama_1799	0.80	-1.9
2,191,677	-		Sama_1799	0.80	-2.6
2,191,680	+		Sama_1799	0.80	-0.5
2,191,680	+		Sama_1799	0.80	-2.2
2,191,680	+		Sama_1799	0.80	-0.2
2,191,681	-		Sama_1799	0.80	-0.9
2,191,681	-		Sama_1799	0.80	-0.2
2,191,684	+		Sama_1799	0.80	-1.4
2,191,700	+		Sama_1799	0.83	-0.6
2,191,746	+		Sama_1799	0.89	+1.4
2,191,765	+				+1.7
2,191,765	+				+0.8
2,191,766	-				-0.1
2,191,766	-				-0.2
2,191,862	+				+0.4
2,191,879	+				-1.9
2,191,880	-				+0.4
2,191,880	-				-0.2
2,191,884	+				+1.1
2,191,900	-				+1.4