Strain Fitness in Shewanella amazonensis SB2B around Sama_1766

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1765 and Sama_1766 are separated by 90 nucleotidesSama_1766 and rpmI are separated by 88 nucleotidesrpmI and rplT are separated by 16 nucleotidesrplT and Sama_1769 are separated by 130 nucleotides Sama_1765: Sama_1765 - threonyl-tRNA synthetase (RefSeq), at 2,159,575 to 2,161,503 _1765 Sama_1766: Sama_1766 - translation initiation factor IF-3 (RefSeq), at 2,161,594 to 2,162,046 _1766 Sama_1767: rpmI - 50S ribosomal protein L35 (RefSeq), at 2,162,135 to 2,162,329 rpmI Sama_1768: rplT - 50S ribosomal protein L20 (RefSeq), at 2,162,346 to 2,162,705 rplT Sama_1769: Sama_1769 - thioredoxin reductase (RefSeq), at 2,162,836 to 2,163,789 _1769 Position (kb) 2161 2162 2163Strain fitness (log2 ratio) -1 0 1at 2162.733 kb on + strandat 2162.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,162,733 + +0.0
2,162,778 - -0.2

Or see this region's nucleotide sequence