Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0541 and Sama_0542 are separated by 204 nucleotides Sama_0542 and Sama_0543 are separated by 68 nucleotides Sama_0543 and Sama_0544 are separated by 125 nucleotides
Sama_0541: Sama_0541 - serine/threonine protein kinase, putative (RefSeq), at 666,263 to 668,083
_0541
Sama_0542: Sama_0542 - hypothetical protein (RefSeq), at 668,288 to 668,632
_0542
Sama_0543: Sama_0543 - thiopurine S-methyltransferase (RefSeq), at 668,701 to 669,357
_0543
Sama_0544: Sama_0544 - outer membrane porin, putative (RefSeq), at 669,483 to 670,568
_0544
Position (kb) 668
669 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 667.332 kb on + strand, within Sama_0541 at 667.333 kb on - strand, within Sama_0541 at 667.347 kb on - strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.410 kb on + strand, within Sama_0541 at 667.411 kb on - strand, within Sama_0541 at 667.435 kb on + strand, within Sama_0541 at 667.436 kb on - strand, within Sama_0541 at 667.436 kb on - strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.466 kb on + strand, within Sama_0541 at 667.467 kb on - strand, within Sama_0541 at 667.467 kb on - strand, within Sama_0541 at 667.467 kb on - strand, within Sama_0541 at 667.538 kb on + strand, within Sama_0541 at 667.538 kb on + strand, within Sama_0541 at 667.539 kb on - strand, within Sama_0541 at 667.539 kb on - strand, within Sama_0541 at 667.539 kb on - strand, within Sama_0541 at 667.561 kb on - strand, within Sama_0541 at 667.561 kb on - strand, within Sama_0541 at 667.561 kb on - strand, within Sama_0541 at 667.561 kb on - strand, within Sama_0541 at 667.613 kb on - strand, within Sama_0541 at 667.613 kb on - strand, within Sama_0541 at 667.613 kb on - strand, within Sama_0541 at 667.613 kb on - strand, within Sama_0541 at 667.617 kb on + strand, within Sama_0541 at 667.617 kb on + strand, within Sama_0541 at 667.617 kb on + strand, within Sama_0541 at 667.667 kb on - strand, within Sama_0541 at 667.667 kb on - strand, within Sama_0541 at 667.804 kb on + strand, within Sama_0541 at 667.804 kb on + strand, within Sama_0541 at 667.804 kb on + strand, within Sama_0541 at 667.805 kb on - strand, within Sama_0541 at 667.805 kb on - strand, within Sama_0541 at 667.849 kb on + strand, within Sama_0541 at 667.849 kb on + strand, within Sama_0541 at 667.849 kb on + strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.850 kb on - strand, within Sama_0541 at 667.852 kb on + strand, within Sama_0541 at 667.868 kb on + strand, within Sama_0541 at 667.868 kb on + strand, within Sama_0541 at 667.868 kb on + strand, within Sama_0541 at 667.869 kb on - strand, within Sama_0541 at 667.869 kb on - strand, within Sama_0541 at 667.869 kb on - strand, within Sama_0541 at 667.869 kb on - strand, within Sama_0541 at 667.937 kb on + strand at 667.937 kb on + strand at 667.937 kb on + strand at 667.937 kb on + strand at 667.938 kb on - strand at 667.938 kb on - strand at 667.973 kb on - strand at 667.973 kb on - strand at 667.973 kb on - strand at 667.973 kb on - strand at 667.982 kb on + strand at 667.999 kb on + strand at 668.025 kb on + strand at 668.025 kb on + strand at 668.026 kb on - strand at 668.026 kb on - strand at 668.047 kb on + strand at 668.049 kb on + strand at 668.050 kb on - strand at 668.050 kb on - strand at 668.106 kb on - strand at 668.108 kb on + strand at 668.108 kb on + strand at 668.109 kb on - strand at 668.109 kb on - strand at 668.109 kb on - strand at 668.119 kb on + strand at 668.149 kb on + strand at 668.150 kb on - strand at 668.150 kb on - strand at 668.165 kb on - strand at 668.236 kb on - strand at 668.236 kb on - strand at 668.236 kb on - strand at 668.244 kb on - strand at 668.244 kb on - strand at 668.245 kb on + strand at 668.245 kb on + strand at 668.324 kb on + strand, within Sama_0542 at 668.325 kb on - strand, within Sama_0542 at 668.338 kb on + strand, within Sama_0542 at 668.338 kb on + strand, within Sama_0542 at 668.338 kb on + strand, within Sama_0542 at 668.338 kb on + strand, within Sama_0542 at 668.339 kb on - strand, within Sama_0542 at 668.344 kb on + strand, within Sama_0542 at 668.345 kb on - strand, within Sama_0542 at 668.390 kb on + strand, within Sama_0542 at 668.390 kb on + strand, within Sama_0542 at 668.390 kb on + strand, within Sama_0542 at 668.390 kb on + strand, within Sama_0542 at 668.391 kb on - strand, within Sama_0542 at 668.392 kb on + strand, within Sama_0542 at 668.393 kb on - strand, within Sama_0542 at 668.417 kb on + strand, within Sama_0542 at 668.417 kb on + strand, within Sama_0542 at 668.417 kb on + strand, within Sama_0542 at 668.417 kb on + strand, within Sama_0542 at 668.418 kb on - strand, within Sama_0542 at 668.418 kb on - strand, within Sama_0542 at 668.418 kb on - strand, within Sama_0542 at 668.418 kb on - strand, within Sama_0542 at 668.501 kb on - strand, within Sama_0542 at 668.501 kb on - strand, within Sama_0542 at 668.501 kb on - strand, within Sama_0542 at 668.523 kb on + strand, within Sama_0542 at 668.552 kb on + strand, within Sama_0542 at 668.553 kb on - strand, within Sama_0542 at 668.553 kb on - strand, within Sama_0542 at 668.664 kb on + strand at 668.670 kb on - strand at 668.689 kb on + strand at 668.690 kb on - strand at 668.811 kb on + strand, within Sama_0543 at 668.811 kb on + strand, within Sama_0543 at 668.812 kb on - strand, within Sama_0543 at 668.812 kb on - strand, within Sama_0543 at 668.975 kb on + strand, within Sama_0543 at 668.975 kb on + strand, within Sama_0543 at 668.975 kb on + strand, within Sama_0543 at 668.975 kb on + strand, within Sama_0543 at 668.976 kb on - strand, within Sama_0543 at 668.976 kb on - strand, within Sama_0543 at 668.976 kb on - strand, within Sama_0543 at 668.976 kb on - strand, within Sama_0543 at 669.005 kb on + strand, within Sama_0543 at 669.006 kb on - strand, within Sama_0543 at 669.006 kb on - strand, within Sama_0543 at 669.109 kb on + strand, within Sama_0543 at 669.109 kb on + strand, within Sama_0543 at 669.109 kb on + strand, within Sama_0543 at 669.109 kb on + strand, within Sama_0543 at 669.110 kb on - strand, within Sama_0543 at 669.117 kb on + strand, within Sama_0543 at 669.118 kb on - strand, within Sama_0543 at 669.131 kb on + strand, within Sama_0543 at 669.131 kb on + strand, within Sama_0543 at 669.162 kb on + strand, within Sama_0543 at 669.162 kb on + strand, within Sama_0543 at 669.162 kb on + strand, within Sama_0543 at 669.245 kb on - strand, within Sama_0543 at 669.257 kb on + strand, within Sama_0543 at 669.257 kb on + strand, within Sama_0543 at 669.337 kb on + strand at 669.337 kb on + strand at 669.337 kb on + strand at 669.337 kb on + strand at 669.351 kb on + strand at 669.351 kb on + strand at 669.352 kb on - strand at 669.355 kb on + strand at 669.355 kb on + strand at 669.355 kb on + strand at 669.364 kb on + strand at 669.364 kb on + strand at 669.376 kb on + strand at 669.376 kb on + strand at 669.376 kb on + strand at 669.376 kb on + strand at 669.377 kb on - strand at 669.377 kb on - strand at 669.377 kb on - strand at 669.485 kb on - strand at 669.485 kb on - strand at 669.493 kb on + strand at 669.494 kb on - strand at 669.494 kb on - strand at 669.498 kb on + strand at 669.498 kb on + strand at 669.498 kb on + strand at 669.499 kb on - strand at 669.499 kb on - strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.568 kb on + strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.569 kb on - strand at 669.577 kb on + strand at 669.577 kb on + strand at 669.578 kb on - strand at 669.613 kb on + strand, within Sama_0544 at 669.629 kb on + strand, within Sama_0544 at 669.629 kb on + strand, within Sama_0544 at 669.629 kb on + strand, within Sama_0544 at 669.629 kb on + strand, within Sama_0544 at 669.630 kb on - strand, within Sama_0544 at 669.630 kb on - strand, within Sama_0544
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 667,332 + Sama_0541 0.59 +1.2 667,333 - Sama_0541 0.59 -0.3 667,347 - Sama_0541 0.60 -0.2 667,410 + Sama_0541 0.63 +0.7 667,410 + Sama_0541 0.63 -0.3 667,410 + Sama_0541 0.63 -0.5 667,410 + Sama_0541 0.63 +0.8 667,410 + Sama_0541 0.63 -0.8 667,411 - Sama_0541 0.63 +0.6 667,435 + Sama_0541 0.64 +0.6 667,436 - Sama_0541 0.64 -0.5 667,436 - Sama_0541 0.64 -0.5 667,466 + Sama_0541 0.66 +0.2 667,466 + Sama_0541 0.66 +0.1 667,466 + Sama_0541 0.66 +0.3 667,466 + Sama_0541 0.66 -0.2 667,466 + Sama_0541 0.66 -0.2 667,466 + Sama_0541 0.66 -0.4 667,466 + Sama_0541 0.66 -0.5 667,466 + Sama_0541 0.66 +0.8 667,466 + Sama_0541 0.66 -0.1 667,466 + Sama_0541 0.66 +0.7 667,467 - Sama_0541 0.66 -0.3 667,467 - Sama_0541 0.66 -0.7 667,467 - Sama_0541 0.66 +0.0 667,538 + Sama_0541 0.70 -0.3 667,538 + Sama_0541 0.70 -0.0 667,539 - Sama_0541 0.70 +1.0 667,539 - Sama_0541 0.70 -1.2 667,539 - Sama_0541 0.70 +1.1 667,561 - Sama_0541 0.71 +0.5 667,561 - Sama_0541 0.71 +0.8 667,561 - Sama_0541 0.71 -2.6 667,561 - Sama_0541 0.71 -1.4 667,613 - Sama_0541 0.74 +0.5 667,613 - Sama_0541 0.74 -0.9 667,613 - Sama_0541 0.74 -0.9 667,613 - Sama_0541 0.74 +0.7 667,617 + Sama_0541 0.74 -0.3 667,617 + Sama_0541 0.74 +0.1 667,617 + Sama_0541 0.74 -0.1 667,667 - Sama_0541 0.77 +0.8 667,667 - Sama_0541 0.77 +0.4 667,804 + Sama_0541 0.85 -1.0 667,804 + Sama_0541 0.85 +0.8 667,804 + Sama_0541 0.85 -0.8 667,805 - Sama_0541 0.85 +1.1 667,805 - Sama_0541 0.85 -0.8 667,849 + Sama_0541 0.87 -0.4 667,849 + Sama_0541 0.87 -0.1 667,849 + Sama_0541 0.87 -0.5 667,850 - Sama_0541 0.87 -0.5 667,850 - Sama_0541 0.87 -0.1 667,850 - Sama_0541 0.87 -2.0 667,850 - Sama_0541 0.87 -0.2 667,850 - Sama_0541 0.87 +0.8 667,852 + Sama_0541 0.87 -1.2 667,868 + Sama_0541 0.88 -0.7 667,868 + Sama_0541 0.88 +0.1 667,868 + Sama_0541 0.88 +0.7 667,869 - Sama_0541 0.88 +0.6 667,869 - Sama_0541 0.88 +0.1 667,869 - Sama_0541 0.88 -0.2 667,869 - Sama_0541 0.88 -0.2 667,937 + +0.1 667,937 + +2.8 667,937 + -1.5 667,937 + -0.5 667,938 - -0.8 667,938 - +0.5 667,973 - -0.7 667,973 - -0.2 667,973 - +0.5 667,973 - +0.3 667,982 + +1.8 667,999 + +0.6 668,025 + +0.4 668,025 + +1.5 668,026 - -0.9 668,026 - -0.1 668,047 + -0.8 668,049 + +0.4 668,050 - -0.2 668,050 - -0.2 668,106 - -0.4 668,108 + +1.2 668,108 + +0.1 668,109 - +2.8 668,109 - -1.0 668,109 - -1.0 668,119 + +3.1 668,149 + +0.1 668,150 - +0.2 668,150 - -0.2 668,165 - -0.8 668,236 - -0.5 668,236 - -0.7 668,236 - +0.5 668,244 - -1.2 668,244 - +0.8 668,245 + -0.3 668,245 + -0.4 668,324 + Sama_0542 0.10 +0.1 668,325 - Sama_0542 0.11 +1.6 668,338 + Sama_0542 0.14 +0.4 668,338 + Sama_0542 0.14 +0.6 668,338 + Sama_0542 0.14 -1.2 668,338 + Sama_0542 0.14 -2.0 668,339 - Sama_0542 0.15 -0.8 668,344 + Sama_0542 0.16 +0.5 668,345 - Sama_0542 0.17 -0.8 668,390 + Sama_0542 0.30 +1.2 668,390 + Sama_0542 0.30 +0.8 668,390 + Sama_0542 0.30 +0.3 668,390 + Sama_0542 0.30 -0.5 668,391 - Sama_0542 0.30 +0.8 668,392 + Sama_0542 0.30 -0.8 668,393 - Sama_0542 0.30 +0.4 668,417 + Sama_0542 0.37 +0.9 668,417 + Sama_0542 0.37 -0.2 668,417 + Sama_0542 0.37 +0.6 668,417 + Sama_0542 0.37 -0.5 668,418 - Sama_0542 0.38 +1.1 668,418 - Sama_0542 0.38 +0.1 668,418 - Sama_0542 0.38 +1.1 668,418 - Sama_0542 0.38 -0.6 668,501 - Sama_0542 0.62 +0.8 668,501 - Sama_0542 0.62 +1.8 668,501 - Sama_0542 0.62 +0.8 668,523 + Sama_0542 0.68 +0.2 668,552 + Sama_0542 0.77 -0.0 668,553 - Sama_0542 0.77 -0.5 668,553 - Sama_0542 0.77 +0.1 668,664 + +0.3 668,670 - +0.4 668,689 + +1.8 668,690 - +0.1 668,811 + Sama_0543 0.17 +0.8 668,811 + Sama_0543 0.17 -0.1 668,812 - Sama_0543 0.17 +1.0 668,812 - Sama_0543 0.17 -0.8 668,975 + Sama_0543 0.42 +0.3 668,975 + Sama_0543 0.42 +0.1 668,975 + Sama_0543 0.42 +0.4 668,975 + Sama_0543 0.42 +0.6 668,976 - Sama_0543 0.42 +0.8 668,976 - Sama_0543 0.42 -0.2 668,976 - Sama_0543 0.42 -0.1 668,976 - Sama_0543 0.42 -0.0 669,005 + Sama_0543 0.46 -0.7 669,006 - Sama_0543 0.46 +3.1 669,006 - Sama_0543 0.46 +0.1 669,109 + Sama_0543 0.62 +0.7 669,109 + Sama_0543 0.62 -1.2 669,109 + Sama_0543 0.62 -0.3 669,109 + Sama_0543 0.62 +0.1 669,110 - Sama_0543 0.62 +0.1 669,117 + Sama_0543 0.63 -0.4 669,118 - Sama_0543 0.63 -0.1 669,131 + Sama_0543 0.65 +0.9 669,131 + Sama_0543 0.65 -0.2 669,162 + Sama_0543 0.70 +0.3 669,162 + Sama_0543 0.70 +0.6 669,162 + Sama_0543 0.70 -0.2 669,245 - Sama_0543 0.83 -0.3 669,257 + Sama_0543 0.85 +0.1 669,257 + Sama_0543 0.85 +0.1 669,337 + +0.3 669,337 + +0.4 669,337 + -0.2 669,337 + +2.0 669,351 + -0.8 669,351 + -0.2 669,352 - +0.1 669,355 + +0.4 669,355 + +0.3 669,355 + +0.3 669,364 + +0.5 669,364 + +1.2 669,376 + +0.4 669,376 + -1.8 669,376 + -0.8 669,376 + -0.9 669,377 - -0.4 669,377 - +0.1 669,377 - +0.8 669,485 - -0.4 669,485 - +0.5 669,493 + -0.1 669,494 - -0.2 669,494 - -1.8 669,498 + -0.2 669,498 + +0.2 669,498 + +1.1 669,499 - +0.4 669,499 - +0.1 669,568 + +1.2 669,568 + +0.4 669,568 + -0.5 669,568 + +0.2 669,568 + +0.0 669,568 + +1.4 669,568 + +0.8 669,568 + -1.6 669,568 + -0.5 669,568 + +1.1 669,568 + -0.4 669,568 + +0.3 669,568 + +0.3 669,568 + -0.0 669,568 + +0.2 669,568 + -1.5 669,569 - -1.3 669,569 - -0.3 669,569 - +0.1 669,569 - -0.4 669,569 - +0.8 669,569 - +0.1 669,569 - +0.2 669,569 - -0.2 669,569 - -0.3 669,569 - +1.1 669,569 - -0.1 669,569 - +0.8 669,569 - +1.3 669,569 - -0.2 669,569 - -0.6 669,577 + -1.3 669,577 + +0.4 669,578 - +0.2 669,613 + Sama_0544 0.12 +0.2 669,629 + Sama_0544 0.13 +1.4 669,629 + Sama_0544 0.13 -1.6 669,629 + Sama_0544 0.13 -0.4 669,629 + Sama_0544 0.13 -0.9 669,630 - Sama_0544 0.14 +0.6 669,630 - Sama_0544 0.14 +0.8
Or see this region's nucleotide sequence