Experiment: m.b. 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g15 and HP15_p42g16 are separated by 41 nucleotides HP15_p42g16 and HP15_p42g17 are separated by 21 nucleotides HP15_p42g17 and HP15_p42g18 are separated by 50 nucleotides HP15_p42g18 and HP15_p42g19 overlap by 1 nucleotides
HP15_p42g15: HP15_p42g15 - KfrA protein, at 9,615 to 10,646
_p42g15
HP15_p42g16: HP15_p42g16 - conjugal transfer protein TraO, at 10,688 to 11,152
_p42g16
HP15_p42g17: HP15_p42g17 - traN-like protein, at 11,174 to 12,502
_p42g17
HP15_p42g18: HP15_p42g18 - traM-like protein, at 12,553 to 12,990
_p42g18
HP15_p42g19: HP15_p42g19 - transfer origin protein, TraL, at 12,990 to 13,715
_p42g19
Position (kb)
11
12
13 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 10.189 kb on + strand, within HP15_p42g15 at 10.199 kb on - strand, within HP15_p42g15 at 10.244 kb on + strand, within HP15_p42g15 at 10.253 kb on - strand, within HP15_p42g15 at 10.298 kb on + strand, within HP15_p42g15 at 10.412 kb on + strand, within HP15_p42g15 at 10.412 kb on + strand, within HP15_p42g15 at 10.548 kb on + strand at 10.585 kb on + strand at 10.633 kb on - strand at 10.710 kb on + strand at 10.789 kb on + strand, within HP15_p42g16 at 10.789 kb on + strand, within HP15_p42g16 at 10.856 kb on + strand, within HP15_p42g16 at 10.864 kb on - strand, within HP15_p42g16 at 10.990 kb on + strand, within HP15_p42g16 at 11.106 kb on + strand at 11.106 kb on - strand at 11.188 kb on + strand at 11.283 kb on - strand at 11.363 kb on - strand, within HP15_p42g17 at 11.384 kb on + strand, within HP15_p42g17 at 11.384 kb on + strand, within HP15_p42g17 at 11.472 kb on + strand, within HP15_p42g17 at 11.480 kb on - strand, within HP15_p42g17 at 11.490 kb on + strand, within HP15_p42g17 at 11.503 kb on - strand, within HP15_p42g17 at 11.534 kb on + strand, within HP15_p42g17 at 11.537 kb on - strand, within HP15_p42g17 at 11.571 kb on + strand, within HP15_p42g17 at 11.689 kb on - strand, within HP15_p42g17 at 11.722 kb on + strand, within HP15_p42g17 at 11.966 kb on + strand, within HP15_p42g17 at 11.982 kb on + strand, within HP15_p42g17 at 11.990 kb on - strand, within HP15_p42g17 at 12.022 kb on + strand, within HP15_p42g17 at 12.050 kb on - strand, within HP15_p42g17 at 12.146 kb on - strand, within HP15_p42g17 at 12.190 kb on + strand, within HP15_p42g17 at 12.190 kb on + strand, within HP15_p42g17 at 12.205 kb on - strand, within HP15_p42g17 at 12.212 kb on + strand, within HP15_p42g17 at 12.222 kb on + strand, within HP15_p42g17 at 12.265 kb on - strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.268 kb on + strand, within HP15_p42g17 at 12.276 kb on - strand, within HP15_p42g17 at 12.276 kb on - strand, within HP15_p42g17 at 12.305 kb on - strand, within HP15_p42g17 at 12.318 kb on + strand, within HP15_p42g17 at 12.365 kb on - strand, within HP15_p42g17 at 12.374 kb on + strand at 12.392 kb on - strand at 12.450 kb on + strand at 12.475 kb on - strand at 12.479 kb on + strand at 12.487 kb on - strand at 12.502 kb on - strand at 12.502 kb on - strand at 12.627 kb on + strand, within HP15_p42g18 at 12.627 kb on + strand, within HP15_p42g18 at 12.646 kb on - strand, within HP15_p42g18 at 12.685 kb on - strand, within HP15_p42g18 at 12.809 kb on - strand, within HP15_p42g18 at 12.879 kb on + strand, within HP15_p42g18 at 12.933 kb on + strand, within HP15_p42g18 at 12.933 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.935 kb on + strand, within HP15_p42g18 at 12.941 kb on - strand, within HP15_p42g18 at 12.943 kb on + strand, within HP15_p42g18 at 12.998 kb on - strand at 13.008 kb on + strand at 13.140 kb on + strand, within HP15_p42g19 at 13.244 kb on + strand, within HP15_p42g19 at 13.255 kb on + strand, within HP15_p42g19 at 13.255 kb on + strand, within HP15_p42g19 at 13.257 kb on - strand, within HP15_p42g19 at 13.295 kb on + strand, within HP15_p42g19 at 13.349 kb on + strand, within HP15_p42g19 at 13.441 kb on + strand, within HP15_p42g19
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 25C remove 10,189 + HP15_p42g15 0.56 -0.2 10,199 - HP15_p42g15 0.57 +0.1 10,244 + HP15_p42g15 0.61 -0.4 10,253 - HP15_p42g15 0.62 +0.1 10,298 + HP15_p42g15 0.66 +0.5 10,412 + HP15_p42g15 0.77 +0.4 10,412 + HP15_p42g15 0.77 +0.9 10,548 + +0.6 10,585 + +0.1 10,633 - -0.4 10,710 + +1.4 10,789 + HP15_p42g16 0.22 +0.4 10,789 + HP15_p42g16 0.22 +0.1 10,856 + HP15_p42g16 0.36 -0.5 10,864 - HP15_p42g16 0.38 +0.4 10,990 + HP15_p42g16 0.65 -0.8 11,106 + -0.3 11,106 - +0.2 11,188 + -0.6 11,283 - -0.2 11,363 - HP15_p42g17 0.14 +1.4 11,384 + HP15_p42g17 0.16 -1.3 11,384 + HP15_p42g17 0.16 +0.1 11,472 + HP15_p42g17 0.22 +0.4 11,480 - HP15_p42g17 0.23 -0.5 11,490 + HP15_p42g17 0.24 +1.1 11,503 - HP15_p42g17 0.25 -0.0 11,534 + HP15_p42g17 0.27 +0.1 11,537 - HP15_p42g17 0.27 -0.5 11,571 + HP15_p42g17 0.30 -0.1 11,689 - HP15_p42g17 0.39 +0.1 11,722 + HP15_p42g17 0.41 +0.4 11,966 + HP15_p42g17 0.60 +0.4 11,982 + HP15_p42g17 0.61 +0.2 11,990 - HP15_p42g17 0.61 -0.4 12,022 + HP15_p42g17 0.64 +0.3 12,050 - HP15_p42g17 0.66 +0.2 12,146 - HP15_p42g17 0.73 -0.9 12,190 + HP15_p42g17 0.76 -0.2 12,190 + HP15_p42g17 0.76 +0.3 12,205 - HP15_p42g17 0.78 +0.5 12,212 + HP15_p42g17 0.78 -1.0 12,222 + HP15_p42g17 0.79 -0.0 12,265 - HP15_p42g17 0.82 -1.8 12,268 + HP15_p42g17 0.82 +0.0 12,268 + HP15_p42g17 0.82 -0.6 12,268 + HP15_p42g17 0.82 +0.1 12,268 + HP15_p42g17 0.82 +0.9 12,268 + HP15_p42g17 0.82 +0.1 12,276 - HP15_p42g17 0.83 +0.4 12,276 - HP15_p42g17 0.83 -0.2 12,305 - HP15_p42g17 0.85 +1.1 12,318 + HP15_p42g17 0.86 -0.1 12,365 - HP15_p42g17 0.90 +0.5 12,374 + +2.4 12,392 - +0.6 12,450 + +0.6 12,475 - -0.3 12,479 + -2.8 12,487 - -0.2 12,502 - +0.4 12,502 - -0.2 12,627 + HP15_p42g18 0.17 +0.3 12,627 + HP15_p42g18 0.17 -0.2 12,646 - HP15_p42g18 0.21 -0.6 12,685 - HP15_p42g18 0.30 -0.3 12,809 - HP15_p42g18 0.58 +0.2 12,879 + HP15_p42g18 0.74 +0.7 12,933 + HP15_p42g18 0.87 -0.5 12,933 + HP15_p42g18 0.87 +0.2 12,935 + HP15_p42g18 0.87 -0.5 12,935 + HP15_p42g18 0.87 +0.4 12,935 + HP15_p42g18 0.87 +0.1 12,935 + HP15_p42g18 0.87 +0.4 12,941 - HP15_p42g18 0.89 -0.0 12,943 + HP15_p42g18 0.89 -0.1 12,998 - +0.2 13,008 + +0.2 13,140 + HP15_p42g19 0.21 +1.1 13,244 + HP15_p42g19 0.35 +0.7 13,255 + HP15_p42g19 0.37 +0.4 13,255 + HP15_p42g19 0.37 -0.3 13,257 - HP15_p42g19 0.37 -0.4 13,295 + HP15_p42g19 0.42 +0.4 13,349 + HP15_p42g19 0.49 -0.6 13,441 + HP15_p42g19 0.62 +0.2
Or see this region's nucleotide sequence