Experiment: m.b. 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4165 and HP15_4166 are separated by 200 nucleotides HP15_4166 and HP15_4167 are separated by 314 nucleotides HP15_4167 and HP15_4168 are separated by 598 nucleotides
HP15_4165: HP15_4165 - protein containing methyltransferase type 11 domain, at 4,402,060 to 4,403,154
_4165
HP15_4166: HP15_4166 - conserved hypothetical protein, at 4,403,355 to 4,403,768
_4166
HP15_4167: HP15_4167 - conserved hypothetical protein, at 4,404,083 to 4,404,550
_4167
HP15_4168: HP15_4168 - hypothetical protein, at 4,405,149 to 4,405,256
_4168
Position (kb)
4404
4405 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4403.116 kb on - strand at 4403.205 kb on + strand at 4403.224 kb on + strand at 4403.232 kb on - strand at 4403.245 kb on + strand at 4403.246 kb on - strand at 4403.250 kb on + strand at 4403.250 kb on + strand at 4403.255 kb on + strand at 4403.258 kb on - strand at 4403.261 kb on + strand at 4403.364 kb on + strand at 4403.457 kb on + strand, within HP15_4166 at 4403.489 kb on + strand, within HP15_4166 at 4403.518 kb on + strand, within HP15_4166 at 4403.523 kb on + strand, within HP15_4166 at 4403.543 kb on + strand, within HP15_4166 at 4403.572 kb on + strand, within HP15_4166 at 4403.646 kb on - strand, within HP15_4166 at 4403.646 kb on - strand, within HP15_4166 at 4403.646 kb on - strand, within HP15_4166 at 4403.658 kb on + strand, within HP15_4166 at 4403.717 kb on + strand, within HP15_4166 at 4403.717 kb on + strand, within HP15_4166 at 4403.725 kb on - strand, within HP15_4166 at 4403.725 kb on - strand, within HP15_4166 at 4403.730 kb on - strand at 4403.734 kb on + strand at 4403.734 kb on + strand at 4403.742 kb on - strand at 4403.816 kb on - strand at 4403.915 kb on + strand at 4404.063 kb on + strand at 4404.063 kb on + strand at 4404.071 kb on - strand at 4404.094 kb on + strand at 4404.094 kb on + strand at 4404.102 kb on - strand at 4404.175 kb on - strand, within HP15_4167 at 4404.311 kb on + strand, within HP15_4167 at 4404.325 kb on + strand, within HP15_4167 at 4404.333 kb on - strand, within HP15_4167 at 4404.333 kb on - strand, within HP15_4167 at 4404.334 kb on + strand, within HP15_4167 at 4404.349 kb on - strand, within HP15_4167 at 4404.375 kb on - strand, within HP15_4167 at 4404.474 kb on - strand, within HP15_4167 at 4404.481 kb on + strand, within HP15_4167 at 4404.669 kb on + strand at 4404.669 kb on + strand at 4404.686 kb on + strand at 4404.686 kb on + strand at 4404.691 kb on + strand at 4404.767 kb on + strand at 4404.767 kb on + strand at 4404.770 kb on - strand at 4404.816 kb on - strand at 4404.905 kb on + strand at 4404.976 kb on + strand at 4405.136 kb on - strand at 4405.138 kb on + strand at 4405.191 kb on - strand, within HP15_4168 at 4405.195 kb on + strand, within HP15_4168 at 4405.203 kb on - strand, within HP15_4168 at 4405.207 kb on + strand, within HP15_4168 at 4405.287 kb on + strand at 4405.287 kb on + strand at 4405.287 kb on + strand at 4405.295 kb on - strand at 4405.295 kb on - strand at 4405.295 kb on - strand at 4405.314 kb on + strand at 4405.427 kb on + strand at 4405.435 kb on - strand at 4405.445 kb on - strand at 4405.456 kb on - strand at 4405.462 kb on + strand at 4405.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 25C remove 4,403,116 - -0.3 4,403,205 + +0.4 4,403,224 + +1.4 4,403,232 - -0.4 4,403,245 + -0.2 4,403,246 - +1.8 4,403,250 + +0.0 4,403,250 + +0.2 4,403,255 + -0.3 4,403,258 - +0.9 4,403,261 + -0.4 4,403,364 + +0.9 4,403,457 + HP15_4166 0.25 -0.1 4,403,489 + HP15_4166 0.32 +0.3 4,403,518 + HP15_4166 0.39 -1.7 4,403,523 + HP15_4166 0.41 -1.6 4,403,543 + HP15_4166 0.45 +1.3 4,403,572 + HP15_4166 0.52 -0.4 4,403,646 - HP15_4166 0.70 -0.5 4,403,646 - HP15_4166 0.70 -2.5 4,403,646 - HP15_4166 0.70 -0.3 4,403,658 + HP15_4166 0.73 +1.0 4,403,717 + HP15_4166 0.87 +0.3 4,403,717 + HP15_4166 0.87 +0.4 4,403,725 - HP15_4166 0.89 +0.6 4,403,725 - HP15_4166 0.89 +0.5 4,403,730 - -0.4 4,403,734 + +0.9 4,403,734 + -0.0 4,403,742 - -0.1 4,403,816 - -0.2 4,403,915 + +0.4 4,404,063 + -0.3 4,404,063 + -0.2 4,404,071 - -0.2 4,404,094 + -0.4 4,404,094 + +0.5 4,404,102 - +0.1 4,404,175 - HP15_4167 0.20 +0.7 4,404,311 + HP15_4167 0.49 +2.0 4,404,325 + HP15_4167 0.52 +0.3 4,404,333 - HP15_4167 0.53 -0.3 4,404,333 - HP15_4167 0.53 -0.4 4,404,334 + HP15_4167 0.54 +0.3 4,404,349 - HP15_4167 0.57 +0.3 4,404,375 - HP15_4167 0.62 +0.7 4,404,474 - HP15_4167 0.84 -0.4 4,404,481 + HP15_4167 0.85 -0.1 4,404,669 + +0.0 4,404,669 + -0.1 4,404,686 + -0.7 4,404,686 + +0.8 4,404,691 + -0.1 4,404,767 + -0.1 4,404,767 + +1.8 4,404,770 - -0.5 4,404,816 - -1.0 4,404,905 + +0.4 4,404,976 + +0.7 4,405,136 - -0.4 4,405,138 + +0.1 4,405,191 - HP15_4168 0.39 +0.0 4,405,195 + HP15_4168 0.43 +0.1 4,405,203 - HP15_4168 0.50 +0.6 4,405,207 + HP15_4168 0.54 +0.6 4,405,287 + +0.0 4,405,287 + +0.1 4,405,287 + -0.5 4,405,295 - +0.8 4,405,295 - +0.7 4,405,295 - +0.1 4,405,314 + -0.2 4,405,427 + +1.8 4,405,435 - -0.5 4,405,445 - -1.1 4,405,456 - +0.3 4,405,462 + -0.7 4,405,492 + -0.1
Or see this region's nucleotide sequence