Experiment: m.b. 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3526 and HP15_3527 are separated by 252 nucleotides HP15_3527 and HP15_3528 are separated by 19 nucleotides
HP15_3526: HP15_3526 - conserved hypothetical protein, at 3,713,185 to 3,714,210
_3526
HP15_3527: HP15_3527 - GGDEF family protein, at 3,714,463 to 3,715,530
_3527
HP15_3528: HP15_3528 - mesoderm specific transcript isoform b isoform-like protein, at 3,715,550 to 3,716,617
_3528
Position (kb)
3714
3715
3716 Strain fitness (log2 ratio)
-1
0
1 at 3713.580 kb on - strand, within HP15_3526 at 3713.596 kb on + strand, within HP15_3526 at 3713.609 kb on + strand, within HP15_3526 at 3713.676 kb on + strand, within HP15_3526 at 3713.969 kb on + strand, within HP15_3526 at 3714.075 kb on + strand, within HP15_3526 at 3714.142 kb on - strand at 3714.142 kb on - strand at 3714.142 kb on - strand at 3714.142 kb on - strand at 3714.144 kb on - strand at 3714.210 kb on - strand at 3714.284 kb on - strand at 3714.403 kb on + strand at 3714.411 kb on - strand at 3714.411 kb on - strand at 3714.481 kb on + strand at 3714.514 kb on + strand at 3714.516 kb on + strand at 3714.734 kb on - strand, within HP15_3527 at 3714.739 kb on - strand, within HP15_3527 at 3714.753 kb on - strand, within HP15_3527 at 3714.758 kb on - strand, within HP15_3527 at 3714.771 kb on + strand, within HP15_3527 at 3714.771 kb on + strand, within HP15_3527 at 3714.779 kb on - strand, within HP15_3527 at 3714.796 kb on + strand, within HP15_3527 at 3714.864 kb on - strand, within HP15_3527 at 3714.990 kb on - strand, within HP15_3527 at 3715.026 kb on - strand, within HP15_3527 at 3715.118 kb on + strand, within HP15_3527 at 3715.119 kb on + strand, within HP15_3527 at 3715.157 kb on + strand, within HP15_3527 at 3715.201 kb on - strand, within HP15_3527 at 3715.240 kb on - strand, within HP15_3527 at 3715.355 kb on + strand, within HP15_3527 at 3715.388 kb on - strand, within HP15_3527 at 3715.389 kb on - strand, within HP15_3527 at 3715.394 kb on - strand, within HP15_3527 at 3715.503 kb on + strand at 3715.503 kb on + strand at 3715.504 kb on - strand at 3715.506 kb on - strand at 3715.584 kb on - strand at 3715.612 kb on + strand at 3715.656 kb on - strand at 3715.666 kb on + strand, within HP15_3528 at 3715.743 kb on + strand, within HP15_3528 at 3715.751 kb on - strand, within HP15_3528 at 3715.781 kb on + strand, within HP15_3528 at 3715.839 kb on + strand, within HP15_3528 at 3715.931 kb on + strand, within HP15_3528 at 3715.939 kb on - strand, within HP15_3528 at 3716.122 kb on + strand, within HP15_3528 at 3716.140 kb on - strand, within HP15_3528 at 3716.146 kb on + strand, within HP15_3528 at 3716.159 kb on - strand, within HP15_3528 at 3716.162 kb on + strand, within HP15_3528 at 3716.217 kb on - strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.404 kb on + strand, within HP15_3528 at 3716.410 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.412 kb on - strand, within HP15_3528 at 3716.459 kb on + strand, within HP15_3528 at 3716.484 kb on - strand, within HP15_3528 at 3716.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 25C remove 3,713,580 - HP15_3526 0.38 +0.3 3,713,596 + HP15_3526 0.40 +0.8 3,713,609 + HP15_3526 0.41 -0.3 3,713,676 + HP15_3526 0.48 -1.2 3,713,969 + HP15_3526 0.76 +0.0 3,714,075 + HP15_3526 0.87 +0.6 3,714,142 - +0.8 3,714,142 - +0.2 3,714,142 - +0.0 3,714,142 - -0.2 3,714,144 - -0.3 3,714,210 - +0.0 3,714,284 - +0.1 3,714,403 + +1.1 3,714,411 - +0.0 3,714,411 - -0.8 3,714,481 + -0.2 3,714,514 + -0.4 3,714,516 + -1.1 3,714,734 - HP15_3527 0.25 -1.0 3,714,739 - HP15_3527 0.26 +0.7 3,714,753 - HP15_3527 0.27 +0.7 3,714,758 - HP15_3527 0.28 +0.1 3,714,771 + HP15_3527 0.29 +0.3 3,714,771 + HP15_3527 0.29 -0.4 3,714,779 - HP15_3527 0.30 +0.1 3,714,796 + HP15_3527 0.31 +0.7 3,714,864 - HP15_3527 0.38 +0.2 3,714,990 - HP15_3527 0.49 +0.6 3,715,026 - HP15_3527 0.53 +1.4 3,715,118 + HP15_3527 0.61 +1.1 3,715,119 + HP15_3527 0.61 -0.0 3,715,157 + HP15_3527 0.65 +0.2 3,715,201 - HP15_3527 0.69 +0.5 3,715,240 - HP15_3527 0.73 +0.4 3,715,355 + HP15_3527 0.84 +0.3 3,715,388 - HP15_3527 0.87 -0.1 3,715,389 - HP15_3527 0.87 -0.2 3,715,394 - HP15_3527 0.87 -0.5 3,715,503 + -0.3 3,715,503 + +0.0 3,715,504 - -0.5 3,715,506 - -0.0 3,715,584 - -1.1 3,715,612 + -0.2 3,715,656 - -0.6 3,715,666 + HP15_3528 0.11 +0.2 3,715,743 + HP15_3528 0.18 +0.4 3,715,751 - HP15_3528 0.19 +0.4 3,715,781 + HP15_3528 0.22 -0.0 3,715,839 + HP15_3528 0.27 +0.1 3,715,931 + HP15_3528 0.36 +0.6 3,715,939 - HP15_3528 0.36 -0.3 3,716,122 + HP15_3528 0.54 +1.0 3,716,140 - HP15_3528 0.55 -0.6 3,716,146 + HP15_3528 0.56 +0.0 3,716,159 - HP15_3528 0.57 -0.0 3,716,162 + HP15_3528 0.57 +0.2 3,716,217 - HP15_3528 0.62 +0.2 3,716,404 + HP15_3528 0.80 -0.6 3,716,404 + HP15_3528 0.80 +0.1 3,716,404 + HP15_3528 0.80 +1.6 3,716,410 - HP15_3528 0.81 -0.1 3,716,412 - HP15_3528 0.81 -0.3 3,716,412 - HP15_3528 0.81 -0.1 3,716,412 - HP15_3528 0.81 +0.0 3,716,412 - HP15_3528 0.81 +0.2 3,716,459 + HP15_3528 0.85 +0.7 3,716,484 - HP15_3528 0.87 -0.9 3,716,528 + +1.0
Or see this region's nucleotide sequence