Experiment: m.b. 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3002 and HP15_3003 are separated by 143 nucleotides HP15_3003 and HP15_3004 are separated by 144 nucleotides HP15_3004 and HP15_3005 are separated by 144 nucleotides
HP15_3002: HP15_3002 - TonB-dependent receptor, at 3,145,920 to 3,147,929
_3002
HP15_3003: HP15_3003 - protein-export protein SecB, at 3,148,073 to 3,148,576
_3003
HP15_3004: HP15_3004 - rhodanese domain protein, at 3,148,721 to 3,149,137
_3004
HP15_3005: HP15_3005 - phosphoglyceromutase, at 3,149,282 to 3,150,832
_3005
Position (kb)
3148
3149
3150 Strain fitness (log2 ratio)
-1
0
1
2 at 3148.196 kb on + strand, within HP15_3003 at 3148.289 kb on + strand, within HP15_3003 at 3148.331 kb on + strand, within HP15_3003 at 3148.388 kb on - strand, within HP15_3003 at 3148.388 kb on - strand, within HP15_3003 at 3148.395 kb on + strand, within HP15_3003 at 3148.470 kb on + strand, within HP15_3003 at 3148.487 kb on + strand, within HP15_3003 at 3148.609 kb on + strand at 3148.628 kb on + strand at 3148.634 kb on - strand at 3148.641 kb on - strand at 3148.877 kb on - strand, within HP15_3004 at 3148.910 kb on + strand, within HP15_3004 at 3148.910 kb on + strand, within HP15_3004 at 3149.139 kb on + strand at 3149.167 kb on + strand at 3149.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 25C remove 3,148,196 + HP15_3003 0.24 +0.0 3,148,289 + HP15_3003 0.43 +0.1 3,148,331 + HP15_3003 0.51 -0.8 3,148,388 - HP15_3003 0.62 +0.2 3,148,388 - HP15_3003 0.62 +0.7 3,148,395 + HP15_3003 0.64 +0.8 3,148,470 + HP15_3003 0.79 +0.8 3,148,487 + HP15_3003 0.82 -0.3 3,148,609 + +0.2 3,148,628 + -0.3 3,148,634 - -0.4 3,148,641 - +0.7 3,148,877 - HP15_3004 0.37 -1.3 3,148,910 + HP15_3004 0.45 -0.6 3,148,910 + HP15_3004 0.45 -0.9 3,149,139 + +1.9 3,149,167 + +0.6 3,149,167 + -0.3
Or see this region's nucleotide sequence