Strain Fitness in Marinobacter adhaerens HP15 around HP15_1962

Experiment: m.b. 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1959 and HP15_1960 overlap by 11 nucleotidesHP15_1960 and HP15_1961 overlap by 1 nucleotidesHP15_1961 and HP15_1962 are separated by 83 nucleotidesHP15_1962 and HP15_1963 are separated by 61 nucleotidesHP15_1963 and HP15_1964 are separated by 63 nucleotides HP15_1959: HP15_1959 - conserved hypothetical protein, at 2,077,914 to 2,078,531 _1959 HP15_1960: HP15_1960 - hypothetical protein, at 2,078,521 to 2,078,835 _1960 HP15_1961: HP15_1961 - hypothetical protein, at 2,078,835 to 2,079,107 _1961 HP15_1962: HP15_1962 - capsid protein of prophage, at 2,079,191 to 2,080,210 _1962 HP15_1963: HP15_1963 - conserved hypothetical protein, at 2,080,272 to 2,080,640 _1963 HP15_1964: HP15_1964 - capsid protein of prophage, at 2,080,704 to 2,082,029 _1964 Position (kb) 2079 2080 2081Strain fitness (log2 ratio) -2 -1 0 1at 2078.285 kb on + strand, within HP15_1959at 2078.340 kb on - strand, within HP15_1959at 2078.355 kb on + strand, within HP15_1959at 2078.360 kb on - strand, within HP15_1959at 2078.363 kb on - strand, within HP15_1959at 2078.378 kb on - strand, within HP15_1959at 2078.410 kb on + strand, within HP15_1959at 2078.543 kb on + strandat 2078.638 kb on + strand, within HP15_1960at 2078.680 kb on - strand, within HP15_1960at 2078.698 kb on + strand, within HP15_1960at 2078.708 kb on + strand, within HP15_1960at 2078.713 kb on + strand, within HP15_1960at 2078.756 kb on - strand, within HP15_1960at 2078.806 kb on + strandat 2078.892 kb on + strand, within HP15_1961at 2078.900 kb on - strand, within HP15_1961at 2078.915 kb on + strand, within HP15_1961at 2079.040 kb on + strand, within HP15_1961at 2079.220 kb on + strandat 2079.228 kb on - strandat 2079.324 kb on + strand, within HP15_1962at 2079.456 kb on + strand, within HP15_1962at 2079.466 kb on + strand, within HP15_1962at 2079.509 kb on - strand, within HP15_1962at 2079.544 kb on + strand, within HP15_1962at 2079.652 kb on + strand, within HP15_1962at 2079.660 kb on - strand, within HP15_1962at 2079.744 kb on - strand, within HP15_1962at 2079.813 kb on + strand, within HP15_1962at 2079.891 kb on + strand, within HP15_1962at 2080.050 kb on - strand, within HP15_1962at 2080.189 kb on + strandat 2080.206 kb on + strandat 2080.214 kb on - strandat 2080.221 kb on + strandat 2080.221 kb on + strandat 2080.234 kb on - strandat 2080.330 kb on - strand, within HP15_1963at 2080.387 kb on - strand, within HP15_1963at 2080.391 kb on - strand, within HP15_1963at 2080.448 kb on + strand, within HP15_1963at 2080.456 kb on - strand, within HP15_1963at 2080.456 kb on - strand, within HP15_1963at 2080.548 kb on - strand, within HP15_1963at 2080.576 kb on - strand, within HP15_1963at 2080.618 kb on - strandat 2080.618 kb on - strandat 2080.754 kb on + strandat 2080.762 kb on - strandat 2080.765 kb on + strandat 2080.765 kb on + strandat 2080.765 kb on + strandat 2080.765 kb on + strandat 2080.773 kb on - strandat 2080.828 kb on - strandat 2080.845 kb on - strand, within HP15_1964at 2080.965 kb on + strand, within HP15_1964at 2081.036 kb on + strand, within HP15_1964at 2081.053 kb on + strand, within HP15_1964at 2081.076 kb on - strand, within HP15_1964at 2081.076 kb on - strand, within HP15_1964at 2081.076 kb on - strand, within HP15_1964at 2081.090 kb on + strand, within HP15_1964at 2081.129 kb on + strand, within HP15_1964at 2081.165 kb on - strand, within HP15_1964

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 25C
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2,078,285 + HP15_1959 0.60 -0.9
2,078,340 - HP15_1959 0.69 -0.0
2,078,355 + HP15_1959 0.71 -0.9
2,078,360 - HP15_1959 0.72 -0.1
2,078,363 - HP15_1959 0.73 +0.4
2,078,378 - HP15_1959 0.75 -0.3
2,078,410 + HP15_1959 0.80 +0.2
2,078,543 + -0.0
2,078,638 + HP15_1960 0.37 +1.3
2,078,680 - HP15_1960 0.50 -0.3
2,078,698 + HP15_1960 0.56 -0.5
2,078,708 + HP15_1960 0.59 -0.6
2,078,713 + HP15_1960 0.61 -0.4
2,078,756 - HP15_1960 0.75 -0.9
2,078,806 + -0.3
2,078,892 + HP15_1961 0.21 -0.3
2,078,900 - HP15_1961 0.24 +0.0
2,078,915 + HP15_1961 0.29 +0.2
2,079,040 + HP15_1961 0.75 +0.0
2,079,220 + +0.2
2,079,228 - +0.8
2,079,324 + HP15_1962 0.13 +0.6
2,079,456 + HP15_1962 0.26 -0.3
2,079,466 + HP15_1962 0.27 +0.5
2,079,509 - HP15_1962 0.31 +0.1
2,079,544 + HP15_1962 0.35 +0.7
2,079,652 + HP15_1962 0.45 +1.2
2,079,660 - HP15_1962 0.46 +0.4
2,079,744 - HP15_1962 0.54 +0.1
2,079,813 + HP15_1962 0.61 +1.3
2,079,891 + HP15_1962 0.69 +1.1
2,080,050 - HP15_1962 0.84 +0.8
2,080,189 + -0.1
2,080,206 + -0.2
2,080,214 - +0.2
2,080,221 + +0.5
2,080,221 + +0.4
2,080,234 - -0.2
2,080,330 - HP15_1963 0.16 +0.0
2,080,387 - HP15_1963 0.31 -0.1
2,080,391 - HP15_1963 0.32 -2.0
2,080,448 + HP15_1963 0.48 -0.7
2,080,456 - HP15_1963 0.50 +0.4
2,080,456 - HP15_1963 0.50 +1.1
2,080,548 - HP15_1963 0.75 +0.9
2,080,576 - HP15_1963 0.82 +0.3
2,080,618 - -0.5
2,080,618 - -0.4
2,080,754 + -0.2
2,080,762 - -0.4
2,080,765 + +0.6
2,080,765 + +0.3
2,080,765 + -0.4
2,080,765 + +1.0
2,080,773 - -0.9
2,080,828 - -0.5
2,080,845 - HP15_1964 0.11 -0.9
2,080,965 + HP15_1964 0.20 -0.8
2,081,036 + HP15_1964 0.25 -0.1
2,081,053 + HP15_1964 0.26 -0.4
2,081,076 - HP15_1964 0.28 +0.1
2,081,076 - HP15_1964 0.28 +0.1
2,081,076 - HP15_1964 0.28 -0.2
2,081,090 + HP15_1964 0.29 +0.2
2,081,129 + HP15_1964 0.32 +0.6
2,081,165 - HP15_1964 0.35 -0.3

Or see this region's nucleotide sequence