Experiment: m.b. 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1959 and HP15_1960 overlap by 11 nucleotides HP15_1960 and HP15_1961 overlap by 1 nucleotides HP15_1961 and HP15_1962 are separated by 83 nucleotides HP15_1962 and HP15_1963 are separated by 61 nucleotides HP15_1963 and HP15_1964 are separated by 63 nucleotides
HP15_1959: HP15_1959 - conserved hypothetical protein, at 2,077,914 to 2,078,531
_1959
HP15_1960: HP15_1960 - hypothetical protein, at 2,078,521 to 2,078,835
_1960
HP15_1961: HP15_1961 - hypothetical protein, at 2,078,835 to 2,079,107
_1961
HP15_1962: HP15_1962 - capsid protein of prophage, at 2,079,191 to 2,080,210
_1962
HP15_1963: HP15_1963 - conserved hypothetical protein, at 2,080,272 to 2,080,640
_1963
HP15_1964: HP15_1964 - capsid protein of prophage, at 2,080,704 to 2,082,029
_1964
Position (kb)
2079
2080
2081 Strain fitness (log2 ratio)
-2
-1
0
1 at 2078.285 kb on + strand, within HP15_1959 at 2078.340 kb on - strand, within HP15_1959 at 2078.355 kb on + strand, within HP15_1959 at 2078.360 kb on - strand, within HP15_1959 at 2078.363 kb on - strand, within HP15_1959 at 2078.378 kb on - strand, within HP15_1959 at 2078.410 kb on + strand, within HP15_1959 at 2078.543 kb on + strand at 2078.638 kb on + strand, within HP15_1960 at 2078.680 kb on - strand, within HP15_1960 at 2078.698 kb on + strand, within HP15_1960 at 2078.708 kb on + strand, within HP15_1960 at 2078.713 kb on + strand, within HP15_1960 at 2078.756 kb on - strand, within HP15_1960 at 2078.806 kb on + strand at 2078.892 kb on + strand, within HP15_1961 at 2078.900 kb on - strand, within HP15_1961 at 2078.915 kb on + strand, within HP15_1961 at 2079.040 kb on + strand, within HP15_1961 at 2079.220 kb on + strand at 2079.228 kb on - strand at 2079.324 kb on + strand, within HP15_1962 at 2079.456 kb on + strand, within HP15_1962 at 2079.466 kb on + strand, within HP15_1962 at 2079.509 kb on - strand, within HP15_1962 at 2079.544 kb on + strand, within HP15_1962 at 2079.652 kb on + strand, within HP15_1962 at 2079.660 kb on - strand, within HP15_1962 at 2079.744 kb on - strand, within HP15_1962 at 2079.813 kb on + strand, within HP15_1962 at 2079.891 kb on + strand, within HP15_1962 at 2080.050 kb on - strand, within HP15_1962 at 2080.189 kb on + strand at 2080.206 kb on + strand at 2080.214 kb on - strand at 2080.221 kb on + strand at 2080.221 kb on + strand at 2080.234 kb on - strand at 2080.330 kb on - strand, within HP15_1963 at 2080.387 kb on - strand, within HP15_1963 at 2080.391 kb on - strand, within HP15_1963 at 2080.448 kb on + strand, within HP15_1963 at 2080.456 kb on - strand, within HP15_1963 at 2080.456 kb on - strand, within HP15_1963 at 2080.548 kb on - strand, within HP15_1963 at 2080.576 kb on - strand, within HP15_1963 at 2080.618 kb on - strand at 2080.618 kb on - strand at 2080.754 kb on + strand at 2080.762 kb on - strand at 2080.765 kb on + strand at 2080.765 kb on + strand at 2080.765 kb on + strand at 2080.765 kb on + strand at 2080.773 kb on - strand at 2080.828 kb on - strand at 2080.845 kb on - strand, within HP15_1964 at 2080.965 kb on + strand, within HP15_1964 at 2081.036 kb on + strand, within HP15_1964 at 2081.053 kb on + strand, within HP15_1964 at 2081.076 kb on - strand, within HP15_1964 at 2081.076 kb on - strand, within HP15_1964 at 2081.076 kb on - strand, within HP15_1964 at 2081.090 kb on + strand, within HP15_1964 at 2081.129 kb on + strand, within HP15_1964 at 2081.165 kb on - strand, within HP15_1964
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 25C remove 2,078,285 + HP15_1959 0.60 -0.9 2,078,340 - HP15_1959 0.69 -0.0 2,078,355 + HP15_1959 0.71 -0.9 2,078,360 - HP15_1959 0.72 -0.1 2,078,363 - HP15_1959 0.73 +0.4 2,078,378 - HP15_1959 0.75 -0.3 2,078,410 + HP15_1959 0.80 +0.2 2,078,543 + -0.0 2,078,638 + HP15_1960 0.37 +1.3 2,078,680 - HP15_1960 0.50 -0.3 2,078,698 + HP15_1960 0.56 -0.5 2,078,708 + HP15_1960 0.59 -0.6 2,078,713 + HP15_1960 0.61 -0.4 2,078,756 - HP15_1960 0.75 -0.9 2,078,806 + -0.3 2,078,892 + HP15_1961 0.21 -0.3 2,078,900 - HP15_1961 0.24 +0.0 2,078,915 + HP15_1961 0.29 +0.2 2,079,040 + HP15_1961 0.75 +0.0 2,079,220 + +0.2 2,079,228 - +0.8 2,079,324 + HP15_1962 0.13 +0.6 2,079,456 + HP15_1962 0.26 -0.3 2,079,466 + HP15_1962 0.27 +0.5 2,079,509 - HP15_1962 0.31 +0.1 2,079,544 + HP15_1962 0.35 +0.7 2,079,652 + HP15_1962 0.45 +1.2 2,079,660 - HP15_1962 0.46 +0.4 2,079,744 - HP15_1962 0.54 +0.1 2,079,813 + HP15_1962 0.61 +1.3 2,079,891 + HP15_1962 0.69 +1.1 2,080,050 - HP15_1962 0.84 +0.8 2,080,189 + -0.1 2,080,206 + -0.2 2,080,214 - +0.2 2,080,221 + +0.5 2,080,221 + +0.4 2,080,234 - -0.2 2,080,330 - HP15_1963 0.16 +0.0 2,080,387 - HP15_1963 0.31 -0.1 2,080,391 - HP15_1963 0.32 -2.0 2,080,448 + HP15_1963 0.48 -0.7 2,080,456 - HP15_1963 0.50 +0.4 2,080,456 - HP15_1963 0.50 +1.1 2,080,548 - HP15_1963 0.75 +0.9 2,080,576 - HP15_1963 0.82 +0.3 2,080,618 - -0.5 2,080,618 - -0.4 2,080,754 + -0.2 2,080,762 - -0.4 2,080,765 + +0.6 2,080,765 + +0.3 2,080,765 + -0.4 2,080,765 + +1.0 2,080,773 - -0.9 2,080,828 - -0.5 2,080,845 - HP15_1964 0.11 -0.9 2,080,965 + HP15_1964 0.20 -0.8 2,081,036 + HP15_1964 0.25 -0.1 2,081,053 + HP15_1964 0.26 -0.4 2,081,076 - HP15_1964 0.28 +0.1 2,081,076 - HP15_1964 0.28 +0.1 2,081,076 - HP15_1964 0.28 -0.2 2,081,090 + HP15_1964 0.29 +0.2 2,081,129 + HP15_1964 0.32 +0.6 2,081,165 - HP15_1964 0.35 -0.3
Or see this region's nucleotide sequence