Experiment: ShewMM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0865 and SO0866 are separated by 14 nucleotides SO0866 and SO0867 are separated by 449 nucleotides
SO0865: SO0865 - conserved hypothetical protein (NCBI ptt file), at 893,523 to 895,031
SO0865
SO0866: SO0866 - minor curlin subunit CsgB, putative (NCBI ptt file), at 895,046 to 895,465
SO0866
SO0867: SO0867 - serine protease, subtilase family (NCBI ptt file), at 895,915 to 898,371
SO0867
Position (kb) 895
896 Strain fitness (log2 ratio) -1
0
1 at 894.048 kb on + strand, within SO0865 at 894.065 kb on + strand, within SO0865 at 894.147 kb on - strand, within SO0865 at 894.157 kb on + strand, within SO0865 at 894.183 kb on + strand, within SO0865 at 894.212 kb on - strand, within SO0865 at 894.223 kb on + strand, within SO0865 at 894.231 kb on - strand, within SO0865 at 894.353 kb on + strand, within SO0865 at 894.353 kb on + strand, within SO0865 at 894.582 kb on + strand, within SO0865 at 894.739 kb on - strand, within SO0865 at 894.825 kb on + strand, within SO0865 at 894.825 kb on + strand, within SO0865 at 894.833 kb on - strand, within SO0865 at 894.833 kb on - strand at 894.841 kb on - strand, within SO0865 at 894.886 kb on + strand at 894.917 kb on - strand at 894.917 kb on - strand at 894.917 kb on - strand at 894.917 kb on - strand at 894.917 kb on - strand at 894.973 kb on - strand at 895.044 kb on + strand at 895.150 kb on + strand, within SO0866 at 895.290 kb on + strand, within SO0866 at 895.313 kb on - strand, within SO0866 at 895.323 kb on - strand, within SO0866 at 895.349 kb on + strand, within SO0866 at 895.511 kb on + strand at 895.654 kb on + strand at 895.669 kb on + strand at 895.860 kb on + strand at 895.882 kb on + strand at 896.046 kb on - strand at 896.093 kb on + strand at 896.108 kb on + strand at 896.126 kb on - strand at 896.132 kb on + strand at 896.144 kb on + strand at 896.152 kb on - strand at 896.152 kb on - strand at 896.172 kb on + strand, within SO0867 at 896.216 kb on + strand, within SO0867 at 896.251 kb on + strand, within SO0867 at 896.253 kb on + strand, within SO0867 at 896.253 kb on + strand, within SO0867 at 896.253 kb on + strand, within SO0867 at 896.253 kb on + strand, within SO0867 at 896.261 kb on - strand, within SO0867 at 896.261 kb on - strand, within SO0867 at 896.261 kb on - strand, within SO0867 at 896.263 kb on + strand, within SO0867 at 896.271 kb on - strand, within SO0867 at 896.271 kb on - strand, within SO0867 at 896.302 kb on + strand, within SO0867 at 896.333 kb on - strand, within SO0867 at 896.338 kb on - strand, within SO0867 at 896.338 kb on - strand, within SO0867 at 896.368 kb on + strand, within SO0867 at 896.375 kb on - strand, within SO0867
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM remove 894,048 + SO0865 0.35 -0.2 894,065 + SO0865 0.36 +0.3 894,147 - SO0865 0.41 +1.5 894,157 + SO0865 0.42 +1.2 894,183 + SO0865 0.44 -0.1 894,212 - SO0865 0.46 -0.2 894,223 + SO0865 0.46 -0.6 894,231 - SO0865 0.47 -0.5 894,353 + SO0865 0.55 +0.8 894,353 + SO0865 0.55 -0.1 894,582 + SO0865 0.70 -0.3 894,739 - SO0865 0.81 -0.1 894,825 + SO0865 0.86 -0.0 894,825 + SO0865 0.86 +0.8 894,833 - SO0865 0.87 +0.2 894,833 - -0.1 894,841 - SO0865 0.87 -0.3 894,886 + +0.5 894,917 - -0.0 894,917 - -0.2 894,917 - +0.5 894,917 - +0.2 894,917 - -1.1 894,973 - +0.1 895,044 + +0.6 895,150 + SO0866 0.25 -1.1 895,290 + SO0866 0.58 -0.7 895,313 - SO0866 0.64 -0.0 895,323 - SO0866 0.66 -0.6 895,349 + SO0866 0.72 -0.8 895,511 + +0.0 895,654 + +0.0 895,669 + +0.7 895,860 + -0.4 895,882 + +0.6 896,046 - -0.3 896,093 + +0.2 896,108 + +0.2 896,126 - -1.3 896,132 + -0.4 896,144 + -0.8 896,152 - +0.1 896,152 - -0.2 896,172 + SO0867 0.10 -0.4 896,216 + SO0867 0.12 +0.1 896,251 + SO0867 0.14 -0.6 896,253 + SO0867 0.14 +0.9 896,253 + SO0867 0.14 -0.5 896,253 + SO0867 0.14 +1.5 896,253 + SO0867 0.14 -0.3 896,261 - SO0867 0.14 +0.2 896,261 - SO0867 0.14 +0.2 896,261 - SO0867 0.14 +0.1 896,263 + SO0867 0.14 +0.5 896,271 - SO0867 0.14 +0.3 896,271 - SO0867 0.14 +1.0 896,302 + SO0867 0.16 +0.1 896,333 - SO0867 0.17 +0.3 896,338 - SO0867 0.17 +0.3 896,338 - SO0867 0.17 +0.5 896,368 + SO0867 0.18 +1.7 896,375 - SO0867 0.19 -0.0
Or see this region's nucleotide sequence