Strain Fitness in Shewanella oneidensis MR-1 around SO0667

Experiment: ShewMM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0666 and SO0667 overlap by 1 nucleotidesSO0667 and SO0668 overlap by 8 nucleotides SO0666: SO0666 - prophage MuSo1, portal protein, putative (NCBI ptt file), at 683,539 to 685,179 SO0666 SO0667: SO0667 - conserved hypothetical protein (NCBI ptt file), at 685,179 to 686,780 SO0667 SO0668: SO0668 - prophage MuSo1, F protein, putative (NCBI ptt file), at 686,773 to 688,110 SO0668 Position (kb) 685 686 687Strain fitness (log2 ratio) -2 -1 0 1at 684.199 kb on + strand, within SO0666at 684.234 kb on - strand, within SO0666at 684.277 kb on + strand, within SO0666at 684.293 kb on - strand, within SO0666at 684.321 kb on + strand, within SO0666at 684.321 kb on + strand, within SO0666at 684.321 kb on + strand, within SO0666at 684.321 kb on + strand, within SO0666at 684.396 kb on + strand, within SO0666at 684.431 kb on + strand, within SO0666at 684.439 kb on - strand, within SO0666at 684.439 kb on - strand, within SO0666at 684.439 kb on - strand, within SO0666at 684.439 kb on - strand, within SO0666at 684.454 kb on - strand, within SO0666at 684.461 kb on - strand, within SO0666at 684.498 kb on + strand, within SO0666at 684.506 kb on - strand, within SO0666at 684.506 kb on - strand, within SO0666at 684.516 kb on - strand, within SO0666at 684.552 kb on + strand, within SO0666at 684.560 kb on - strand, within SO0666at 684.611 kb on + strand, within SO0666at 684.723 kb on - strand, within SO0666at 684.732 kb on - strand, within SO0666at 684.815 kb on + strand, within SO0666at 684.815 kb on + strand, within SO0666at 684.815 kb on + strand, within SO0666at 684.815 kb on + strand, within SO0666at 684.815 kb on + strand, within SO0666at 684.815 kb on + strand, within SO0666at 684.823 kb on - strand, within SO0666at 684.823 kb on - strand, within SO0666at 684.823 kb on - strand, within SO0666at 684.823 kb on - strand, within SO0666at 684.946 kb on - strand, within SO0666at 685.103 kb on - strandat 685.110 kb on - strandat 685.228 kb on + strandat 685.228 kb on + strandat 685.236 kb on - strandat 685.236 kb on - strandat 685.236 kb on - strandat 685.236 kb on - strandat 685.236 kb on - strandat 685.243 kb on + strandat 685.276 kb on + strandat 685.318 kb on + strandat 685.327 kb on - strandat 685.344 kb on + strand, within SO0667at 685.432 kb on + strand, within SO0667at 685.474 kb on + strand, within SO0667at 685.511 kb on + strand, within SO0667at 685.599 kb on + strand, within SO0667at 685.622 kb on - strand, within SO0667at 685.623 kb on - strand, within SO0667at 685.638 kb on + strand, within SO0667at 685.682 kb on - strand, within SO0667at 685.711 kb on + strand, within SO0667at 685.775 kb on + strand, within SO0667at 685.906 kb on + strand, within SO0667at 685.911 kb on + strand, within SO0667at 685.911 kb on + strand, within SO0667at 685.973 kb on - strand, within SO0667at 686.048 kb on - strand, within SO0667at 686.084 kb on + strand, within SO0667at 686.159 kb on - strand, within SO0667at 686.179 kb on + strand, within SO0667at 686.179 kb on + strand, within SO0667at 686.179 kb on + strand, within SO0667at 686.187 kb on - strand, within SO0667at 686.246 kb on + strand, within SO0667at 686.301 kb on - strand, within SO0667at 686.342 kb on - strand, within SO0667at 686.424 kb on + strand, within SO0667at 686.461 kb on + strand, within SO0667at 686.461 kb on + strand, within SO0667at 686.469 kb on - strand, within SO0667at 686.489 kb on + strand, within SO0667at 686.513 kb on + strand, within SO0667at 686.621 kb on - strandat 686.685 kb on + strandat 686.698 kb on - strandat 686.698 kb on - strandat 686.774 kb on + strandat 686.815 kb on + strandat 686.844 kb on + strandat 686.870 kb on - strandat 686.913 kb on - strand, within SO0668at 686.938 kb on + strand, within SO0668at 686.938 kb on + strand, within SO0668at 686.989 kb on + strand, within SO0668at 687.003 kb on - strand, within SO0668at 687.012 kb on + strand, within SO0668at 687.020 kb on - strand, within SO0668at 687.032 kb on - strand, within SO0668at 687.097 kb on + strand, within SO0668at 687.303 kb on + strand, within SO0668at 687.310 kb on + strand, within SO0668at 687.311 kb on - strand, within SO0668at 687.311 kb on - strand, within SO0668at 687.354 kb on + strand, within SO0668at 687.354 kb on + strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.362 kb on - strand, within SO0668at 687.399 kb on - strand, within SO0668at 687.405 kb on + strand, within SO0668at 687.441 kb on + strand, within SO0668at 687.441 kb on + strand, within SO0668at 687.621 kb on - strand, within SO0668at 687.664 kb on + strand, within SO0668at 687.722 kb on - strand, within SO0668at 687.722 kb on - strand, within SO0668at 687.755 kb on + strand, within SO0668

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Per-strain Table

Position Strand Gene LocusTag Fraction ShewMM
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684,199 + SO0666 0.40 -0.8
684,234 - SO0666 0.42 -0.3
684,277 + SO0666 0.45 +1.4
684,293 - SO0666 0.46 -0.1
684,321 + SO0666 0.48 -0.6
684,321 + SO0666 0.48 -0.1
684,321 + SO0666 0.48 -0.6
684,321 + SO0666 0.48 -0.2
684,396 + SO0666 0.52 +0.3
684,431 + SO0666 0.54 -0.6
684,439 - SO0666 0.55 +0.2
684,439 - SO0666 0.55 +0.3
684,439 - SO0666 0.55 -0.0
684,439 - SO0666 0.55 +0.5
684,454 - SO0666 0.56 +1.0
684,461 - SO0666 0.56 +0.6
684,498 + SO0666 0.58 +0.7
684,506 - SO0666 0.59 +0.5
684,506 - SO0666 0.59 +0.1
684,516 - SO0666 0.60 -0.6
684,552 + SO0666 0.62 -2.2
684,560 - SO0666 0.62 -1.0
684,611 + SO0666 0.65 -0.1
684,723 - SO0666 0.72 -1.8
684,732 - SO0666 0.73 -0.1
684,815 + SO0666 0.78 -0.2
684,815 + SO0666 0.78 -0.5
684,815 + SO0666 0.78 -0.5
684,815 + SO0666 0.78 +0.4
684,815 + SO0666 0.78 -0.1
684,815 + SO0666 0.78 -0.9
684,823 - SO0666 0.78 +0.4
684,823 - SO0666 0.78 -0.2
684,823 - SO0666 0.78 +0.5
684,823 - SO0666 0.78 +0.4
684,946 - SO0666 0.86 -0.1
685,103 - +0.5
685,110 - -0.0
685,228 + +0.7
685,228 + +0.1
685,236 - +0.5
685,236 - +0.2
685,236 - +0.1
685,236 - +0.1
685,236 - +0.4
685,243 + +0.0
685,276 + +0.2
685,318 + +0.1
685,327 - -0.3
685,344 + SO0667 0.10 +0.3
685,432 + SO0667 0.16 -0.7
685,474 + SO0667 0.18 -0.1
685,511 + SO0667 0.21 +0.0
685,599 + SO0667 0.26 -0.2
685,622 - SO0667 0.28 +1.0
685,623 - SO0667 0.28 -0.4
685,638 + SO0667 0.29 +1.1
685,682 - SO0667 0.31 -0.5
685,711 + SO0667 0.33 -0.6
685,775 + SO0667 0.37 +0.6
685,906 + SO0667 0.45 -0.7
685,911 + SO0667 0.46 -0.6
685,911 + SO0667 0.46 -0.0
685,973 - SO0667 0.50 +0.2
686,048 - SO0667 0.54 -0.2
686,084 + SO0667 0.56 +0.3
686,159 - SO0667 0.61 +0.3
686,179 + SO0667 0.62 +0.7
686,179 + SO0667 0.62 -0.2
686,179 + SO0667 0.62 -1.8
686,187 - SO0667 0.63 -1.3
686,246 + SO0667 0.67 -0.1
686,301 - SO0667 0.70 -0.1
686,342 - SO0667 0.73 -1.5
686,424 + SO0667 0.78 -0.5
686,461 + SO0667 0.80 +0.2
686,461 + SO0667 0.80 -0.5
686,469 - SO0667 0.81 -0.1
686,489 + SO0667 0.82 -0.8
686,513 + SO0667 0.83 -0.7
686,621 - +0.2
686,685 + -0.3
686,698 - +1.1
686,698 - -0.3
686,774 + +0.1
686,815 + +0.4
686,844 + +0.7
686,870 - +1.1
686,913 - SO0668 0.10 +0.1
686,938 + SO0668 0.12 +0.0
686,938 + SO0668 0.12 +0.1
686,989 + SO0668 0.16 -0.1
687,003 - SO0668 0.17 -0.2
687,012 + SO0668 0.18 +0.3
687,020 - SO0668 0.18 -1.2
687,032 - SO0668 0.19 +1.0
687,097 + SO0668 0.24 -0.2
687,303 + SO0668 0.40 +0.2
687,310 + SO0668 0.40 -0.3
687,311 - SO0668 0.40 +0.5
687,311 - SO0668 0.40 +0.4
687,354 + SO0668 0.43 +0.2
687,354 + SO0668 0.43 +0.0
687,362 - SO0668 0.44 +0.5
687,362 - SO0668 0.44 -0.3
687,362 - SO0668 0.44 +1.4
687,362 - SO0668 0.44 +1.0
687,399 - SO0668 0.47 -0.0
687,405 + SO0668 0.47 +0.1
687,441 + SO0668 0.50 +1.2
687,441 + SO0668 0.50 +0.1
687,621 - SO0668 0.63 +0.3
687,664 + SO0668 0.67 -0.0
687,722 - SO0668 0.71 -0.6
687,722 - SO0668 0.71 -0.3
687,755 + SO0668 0.73 -1.4

Or see this region's nucleotide sequence