Experiment: ShewMM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0115 and SO0116 are separated by 178 nucleotides SO0116 and SO0118 are separated by 648 nucleotides
SO0115: SO0115 - hypothetical protein (NCBI ptt file), at 125,325 to 126,302
SO0115
SO0116: SO0116 - hypothetical protein (NCBI ptt file), at 126,481 to 127,458
SO0116
SO0118: SO0118 - hypothetical protein (NCBI ptt file), at 128,107 to 128,979
SO0118
Position (kb) 126
127
128 Strain fitness (log2 ratio) -1
0
1 at 126.316 kb on - strand at 126.338 kb on - strand at 126.715 kb on + strand, within SO0116 at 126.723 kb on - strand, within SO0116 at 126.723 kb on - strand, within SO0116 at 126.733 kb on - strand, within SO0116 at 126.760 kb on - strand, within SO0116 at 127.112 kb on - strand, within SO0116 at 127.407 kb on - strand at 127.519 kb on + strand at 127.519 kb on + strand at 127.585 kb on + strand at 127.593 kb on - strand at 127.720 kb on + strand at 127.720 kb on + strand at 127.720 kb on + strand at 127.728 kb on - strand at 127.739 kb on - strand at 127.739 kb on - strand at 127.805 kb on - strand at 128.044 kb on + strand at 128.052 kb on - strand at 128.067 kb on - strand at 128.099 kb on + strand at 128.213 kb on + strand, within SO0118 at 128.289 kb on - strand, within SO0118 at 128.300 kb on - strand, within SO0118 at 128.331 kb on - strand, within SO0118 at 128.432 kb on - strand, within SO0118
Per-strain Table
Position Strand Gene LocusTag Fraction ShewMM remove 126,316 - -0.6 126,338 - -0.4 126,715 + SO0116 0.24 -0.6 126,723 - SO0116 0.25 -0.5 126,723 - SO0116 0.25 -1.3 126,733 - SO0116 0.26 -0.3 126,760 - SO0116 0.29 +0.2 127,112 - SO0116 0.65 -0.9 127,407 - +0.8 127,519 + -0.1 127,519 + +1.1 127,585 + +0.0 127,593 - +0.8 127,720 + +1.2 127,720 + +0.2 127,720 + +0.0 127,728 - +0.9 127,739 - +0.5 127,739 - -0.3 127,805 - -0.1 128,044 + +0.4 128,052 - -0.2 128,067 - -0.2 128,099 + +1.1 128,213 + SO0118 0.12 +0.8 128,289 - SO0118 0.21 -0.2 128,300 - SO0118 0.22 +0.1 128,331 - SO0118 0.26 +0.3 128,432 - SO0118 0.37 +0.1
Or see this region's nucleotide sequence