Strain Fitness in Shewanella amazonensis SB2B around Sama_2786

Experiment: acetate 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 25 mM
3,327,362	+		Sama_2784	0.65	-0.4
3,327,363	-		Sama_2784	0.65	-0.5
3,327,363	-		Sama_2784	0.65	-0.3
3,327,363	-		Sama_2784	0.65	-0.6
3,327,435	+		Sama_2784	0.80	+0.2
3,327,435	+		Sama_2784	0.80	-0.8
3,327,435	+		Sama_2784	0.80	+1.7
3,327,759	+		Sama_2785	0.24	-0.5
3,327,759	+		Sama_2785	0.24	-1.5
3,327,759	+		Sama_2785	0.24	-0.2
3,327,759	+		Sama_2785	0.24	-0.4
3,327,759	+		Sama_2785	0.24	-0.3
3,327,759	+		Sama_2785	0.24	+0.1
3,327,759	+		Sama_2785	0.24	-0.2
3,327,759	+		Sama_2785	0.24	+0.4
3,327,760	-		Sama_2785	0.24	-0.5
3,327,760	-		Sama_2785	0.24	+0.0
3,327,760	-		Sama_2785	0.24	+0.1
3,327,760	-		Sama_2785	0.24	+0.1
3,327,776	+		Sama_2785	0.26	+0.3
3,327,777	-		Sama_2785	0.26	+0.6
3,327,866	+		Sama_2785	0.38	-0.4
3,327,866	+		Sama_2785	0.38	+0.2
3,327,891	+		Sama_2785	0.41	+1.4
3,327,892	-		Sama_2785	0.41	-1.2
3,327,892	-		Sama_2785	0.41	-3.0
3,327,893	+		Sama_2785	0.41	+0.6
3,327,893	+		Sama_2785	0.41	+0.7
3,327,893	-		Sama_2785	0.41	-0.1
3,327,893	+		Sama_2785	0.41	+0.8
3,327,893	+		Sama_2785	0.41	-0.1
3,327,893	+		Sama_2785	0.41	-0.5
3,327,893	+		Sama_2785	0.41	+0.8
3,327,893	+		Sama_2785	0.41	-1.8
3,327,894	-		Sama_2785	0.42	-0.5
3,327,894	-		Sama_2785	0.42	+0.7
3,327,894	-		Sama_2785	0.42	-0.3
3,327,894	-		Sama_2785	0.42	-0.4
3,327,894	-		Sama_2785	0.42	-1.2
3,327,929	+		Sama_2785	0.46	-1.5
3,327,929	+		Sama_2785	0.46	-0.0
3,327,991	+		Sama_2785	0.54	+0.5
3,328,011	+		Sama_2785	0.57	+0.6
3,328,012	-		Sama_2785	0.57	+1.6
3,328,012	-		Sama_2785	0.57	-0.9
3,328,012	-		Sama_2785	0.57	+0.4
3,328,033	+		Sama_2785	0.60	+0.5
3,328,034	-		Sama_2785	0.60	-1.1
3,328,034	-		Sama_2785	0.60	-0.1
3,328,034	-		Sama_2785	0.60	-1.2
3,328,034	-		Sama_2785	0.60	+0.9
3,328,125	+		Sama_2785	0.72	+0.9
3,328,126	-		Sama_2785	0.72	+0.2
3,328,126	-		Sama_2785	0.72	-0.5
3,328,126	-		Sama_2785	0.72	+1.6
3,328,126	-		Sama_2785	0.72	-1.0
3,328,139	+		Sama_2785	0.74	-0.4
3,328,222	+		Sama_2785	0.85	-2.0
3,328,223	-		Sama_2785	0.85	+2.0
3,328,223	-		Sama_2785	0.85	+0.9
3,328,254	+		Sama_2785	0.89	+0.6
3,328,254	+		Sama_2785	0.89	+0.1
3,328,255	-		Sama_2785	0.89	+0.4
3,328,284	+				+0.7
3,328,285	-				-0.9
3,328,285	-				+0.3
3,328,285	-				-0.2
3,328,335	+				-0.4
3,328,335	+				+0.5
3,328,336	-				+1.6
3,328,348	+				-0.3
3,328,349	-				-0.4
3,328,401	-				-1.8
3,328,424	+		Sama_2786	0.12	-1.8
3,328,457	+		Sama_2786	0.18	-0.8
3,328,457	+		Sama_2786	0.18	-0.5
3,328,457	+		Sama_2786	0.18	-0.5
3,328,457	+		Sama_2786	0.18	-1.4
3,328,457	+		Sama_2786	0.18	-0.8
3,328,458	-		Sama_2786	0.18	-1.5
3,328,458	-		Sama_2786	0.18	-1.5
3,328,458	-		Sama_2786	0.18	-2.2
3,328,458	-		Sama_2786	0.18	+0.2
3,328,458	-		Sama_2786	0.18	-2.0
3,328,458	-		Sama_2786	0.18	-0.8
3,328,458	-		Sama_2786	0.18	-2.2
3,328,522	+		Sama_2786	0.28	-0.2
3,328,523	-		Sama_2786	0.28	-0.7
3,328,562	+		Sama_2786	0.34	-0.2
3,328,563	-		Sama_2786	0.34	+0.8
3,328,563	-		Sama_2786	0.34	-0.8
3,328,564	+		Sama_2786	0.35	+0.4
3,328,565	-		Sama_2786	0.35	-2.9
3,328,565	-		Sama_2786	0.35	-1.2
3,328,565	-		Sama_2786	0.35	-0.4
3,328,565	-		Sama_2786	0.35	-0.8
3,328,565	-		Sama_2786	0.35	-0.8
3,328,642	+		Sama_2786	0.47	-1.3
3,328,642	+		Sama_2786	0.47	-1.2
3,328,643	-		Sama_2786	0.47	-2.6
3,328,643	-		Sama_2786	0.47	-2.5
3,328,674	+		Sama_2786	0.52	-0.8
3,328,674	+		Sama_2786	0.52	+0.2
3,328,675	-		Sama_2786	0.52	-0.9
3,328,675	-		Sama_2786	0.52	-0.6
3,328,675	-		Sama_2786	0.52	-1.0
3,328,689	-		Sama_2786	0.55	-1.7
3,328,713	-		Sama_2786	0.58	-1.2
3,328,713	-		Sama_2786	0.58	-1.2
3,328,731	+		Sama_2786	0.61	-0.2
3,328,732	-		Sama_2786	0.61	-1.8
3,328,732	-		Sama_2786	0.61	+0.2
3,328,793	-		Sama_2786	0.71	-1.9
3,328,824	-		Sama_2786	0.76	-0.8
3,328,925	+				+0.4
3,328,925	+				-1.2
3,328,925	+				-0.2
3,328,926	-				+0.8
3,328,926	-				-1.4
3,328,926	-				-2.4
3,328,986	+				-0.2
3,328,986	+				-1.5
3,328,987	-				-0.0
3,328,994	+				+0.4
3,328,995	-				-0.4
3,328,995	-				-2.1
3,329,012	+				+0.3
3,329,012	+				-0.8
3,329,012	+				+0.5
3,329,012	+				-0.9
3,329,013	-				-0.4
3,329,013	-				-0.5
3,329,013	-				+0.0
3,329,016	-				-0.8
3,329,022	-				-0.7
3,329,030	+				-1.2
3,329,063	+				-1.1
3,329,063	+				-0.2
3,329,063	+				+1.8
3,329,063	+				-0.5
3,329,063	+				+0.5
3,329,064	-				-0.0
3,329,064	-				-0.9
3,329,064	-				-0.1
3,329,064	-				+1.0
3,329,064	-				+2.1
3,329,068	-				+0.2
3,329,121	-				+0.5
3,329,124	-				+0.2
3,329,124	-				-0.8
3,329,234	+		Sama_2787	0.17	-0.3
3,329,234	+		Sama_2787	0.17	+0.1
3,329,234	+		Sama_2787	0.17	-0.8
3,329,235	-		Sama_2787	0.17	-0.4
3,329,235	-		Sama_2787	0.17	+0.0
3,329,235	-		Sama_2787	0.17	-1.0
3,329,243	+		Sama_2787	0.18	+0.6
3,329,243	+		Sama_2787	0.18	+0.8
3,329,244	-		Sama_2787	0.18	-0.8
3,329,244	-		Sama_2787	0.18	-1.2
3,329,257	+		Sama_2787	0.21	+0.2
3,329,257	+		Sama_2787	0.21	-0.4
3,329,258	-		Sama_2787	0.21	-0.4
3,329,347	+		Sama_2787	0.36	+2.4
3,329,347	+		Sama_2787	0.36	-0.5
3,329,347	+		Sama_2787	0.36	+0.6
3,329,347	+		Sama_2787	0.36	-0.5
3,329,347	+		Sama_2787	0.36	+2.0
3,329,347	+		Sama_2787	0.36	-0.1
3,329,347	+		Sama_2787	0.36	-1.0
3,329,347	+		Sama_2787	0.36	-0.1
3,329,347	+		Sama_2787	0.36	+0.8
3,329,347	+		Sama_2787	0.36	-0.1
3,329,347	+		Sama_2787	0.36	+0.4
3,329,347	+		Sama_2787	0.36	+0.1
3,329,347	+		Sama_2787	0.36	+0.4
3,329,347	+		Sama_2787	0.36	+0.9
3,329,347	+		Sama_2787	0.36	+0.1
3,329,347	+		Sama_2787	0.36	-0.5
3,329,347	+		Sama_2787	0.36	-0.8
3,329,348	-		Sama_2787	0.36	+1.8
3,329,348	-		Sama_2787	0.36	-0.3
3,329,348	-		Sama_2787	0.36	+0.2
3,329,348	-		Sama_2787	0.36	+0.5
3,329,348	-		Sama_2787	0.36	-0.9
3,329,348	-		Sama_2787	0.36	+0.2
3,329,348	-		Sama_2787	0.36	-1.8
3,329,348	-		Sama_2787	0.36	-0.8
3,329,348	-		Sama_2787	0.36	+0.5
3,329,504	+		Sama_2787	0.63	+0.2
3,329,504	+		Sama_2787	0.63	+0.1
3,329,504	+		Sama_2787	0.63	-0.5
3,329,505	-		Sama_2787	0.63	-0.2
3,329,573	+		Sama_2787	0.75	+0.2
3,329,622	-		Sama_2787	0.83	+0.7
3,329,662	+		Sama_2787	0.90	-1.1
3,329,663	-				-0.6
3,329,719	+				-0.1
3,329,719	+				+0.5
3,329,719	+				-0.0
3,329,719	+				-0.1
3,329,719	+				-0.3
3,329,720	-				+1.8
3,329,720	-				-0.2
3,329,720	-				+0.8
3,329,825	+		Sama_2788	0.20	-0.6
3,329,825	+		Sama_2788	0.20	-0.5
3,329,826	-		Sama_2788	0.20	-0.2
3,329,831	+		Sama_2788	0.21	+0.4
3,329,832	-		Sama_2788	0.22	+0.2
3,329,832	-		Sama_2788	0.22	+0.2
3,329,832	-		Sama_2788	0.22	-0.8
3,329,832	-		Sama_2788	0.22	-0.1
3,329,848	+		Sama_2788	0.26	-0.4
3,329,848	+		Sama_2788	0.26	-0.4
3,329,848	+		Sama_2788	0.26	+1.3
3,329,849	-		Sama_2788	0.26	+0.9
3,329,849	-		Sama_2788	0.26	-0.8
3,329,849	-		Sama_2788	0.26	+0.4
3,329,849	-		Sama_2788	0.26	+0.5
3,329,849	-		Sama_2788	0.26	-0.8
3,329,932	+		Sama_2788	0.48	-0.1
3,329,933	-		Sama_2788	0.48	-1.4