Strain Fitness in Shewanella amazonensis SB2B around Sama_2659

Experiment: acetate 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 25 mM
3,181,910	+		Sama_2657	0.84	-0.4
3,181,910	+		Sama_2657	0.84	+0.0
3,181,910	+		Sama_2657	0.84	-0.3
3,181,911	-		Sama_2657	0.84	-0.3
3,181,911	-		Sama_2657	0.84	-1.0
3,181,911	-		Sama_2657	0.84	+0.1
3,181,911	-		Sama_2657	0.84	+0.2
3,181,911	-		Sama_2657	0.84	+0.9
3,181,911	-		Sama_2657	0.84	+0.5
3,181,950	+		Sama_2657	0.89	-0.4
3,181,950	+		Sama_2657	0.89	+1.1
3,181,951	-		Sama_2657	0.89	-0.8
3,181,951	-		Sama_2657	0.89	-0.8
3,181,951	-		Sama_2657	0.89	+0.1
3,181,951	-		Sama_2657	0.89	+0.1
3,181,953	+		Sama_2657	0.89	-0.8
3,181,953	+		Sama_2657	0.89	-0.9
3,181,954	-		Sama_2657	0.89	+0.3
3,181,954	-		Sama_2657	0.89	+2.1
3,181,954	-		Sama_2657	0.89	-0.8
3,182,059	+				-1.4
3,182,060	-				-1.0
3,182,060	-				+1.3
3,182,060	-				-0.1
3,182,060	-				+0.4
3,182,080	-				-1.8
3,182,080	-				-1.1
3,182,106	-				+1.6
3,182,113	+				-0.4
3,182,113	+				+1.5
3,182,113	+				-0.7
3,182,113	+				+0.5
3,182,113	+				-0.3
3,182,113	+				-1.0
3,182,113	+				+0.5
3,182,113	+				-0.6
3,182,113	+				+0.3
3,182,113	+				-0.6
3,182,114	-				-0.9
3,182,114	-				-0.4
3,182,114	-				+0.3
3,182,114	-				-2.8
3,182,114	-				+0.3
3,182,156	+		Sama_2658	0.17	-0.3
3,182,156	+		Sama_2658	0.17	-0.3
3,182,156	+		Sama_2658	0.17	+0.1
3,182,156	+		Sama_2658	0.17	+0.2
3,182,156	+		Sama_2658	0.17	+0.1
3,182,156	+		Sama_2658	0.17	+0.7
3,182,156	+		Sama_2658	0.17	-1.6
3,182,156	+		Sama_2658	0.17	+0.0
3,182,156	+		Sama_2658	0.17	+0.7
3,182,157	-		Sama_2658	0.17	+1.0
3,182,157	-		Sama_2658	0.17	+1.7
3,182,157	-		Sama_2658	0.17	+2.1
3,182,157	-		Sama_2658	0.17	+1.7
3,182,157	-		Sama_2658	0.17	+0.5
3,182,157	-		Sama_2658	0.17	-0.0
3,182,157	-		Sama_2658	0.17	+0.4
3,182,157	-		Sama_2658	0.17	-0.1
3,182,157	-		Sama_2658	0.17	-2.1
3,182,157	-		Sama_2658	0.17	+0.2
3,182,177	-		Sama_2658	0.21	-0.3
3,182,193	+		Sama_2658	0.24	+0.1
3,182,193	+		Sama_2658	0.24	+0.7
3,182,193	+		Sama_2658	0.24	+0.2
3,182,193	+		Sama_2658	0.24	+0.4
3,182,194	-		Sama_2658	0.24	+0.6
3,182,296	+		Sama_2658	0.44	+0.3
3,182,296	+		Sama_2658	0.44	-0.8
3,182,296	+		Sama_2658	0.44	+3.1
3,182,296	+		Sama_2658	0.44	+0.0
3,182,297	-		Sama_2658	0.44	+0.3
3,182,297	-		Sama_2658	0.44	-1.6
3,182,297	-		Sama_2658	0.44	-0.5
3,182,297	-		Sama_2658	0.44	+0.2
3,182,358	+		Sama_2658	0.56	+0.7
3,182,361	+		Sama_2658	0.57	-0.8
3,182,361	+		Sama_2658	0.57	-0.8
3,182,361	+		Sama_2658	0.57	-0.3
3,182,361	+		Sama_2658	0.57	-0.7
3,182,361	+		Sama_2658	0.57	-0.3
3,182,361	+		Sama_2658	0.57	-0.4
3,182,362	-		Sama_2658	0.57	-0.1
3,182,362	-		Sama_2658	0.57	-2.1
3,182,362	-		Sama_2658	0.57	-0.8
3,182,362	-		Sama_2658	0.57	-0.1
3,182,362	-		Sama_2658	0.57	+0.7
3,182,362	-		Sama_2658	0.57	-0.2
3,182,362	-		Sama_2658	0.57	+0.3
3,182,390	+		Sama_2658	0.63	+1.1
3,182,390	+		Sama_2658	0.63	+0.1
3,182,391	-		Sama_2658	0.63	+0.5
3,182,393	+		Sama_2658	0.63	+0.1
3,182,393	+		Sama_2658	0.63	+0.7
3,182,393	+		Sama_2658	0.63	-0.1
3,182,394	-		Sama_2658	0.63	+1.3
3,182,394	-		Sama_2658	0.63	+0.7
3,182,394	-		Sama_2658	0.63	+0.8
3,182,451	+		Sama_2658	0.74	+0.2
3,182,451	+		Sama_2658	0.74	+1.4
3,182,451	+		Sama_2658	0.74	-0.8
3,182,451	+		Sama_2658	0.74	-0.8
3,182,452	-		Sama_2658	0.75	-0.5
3,182,484	+		Sama_2658	0.81	+0.7
3,182,484	+		Sama_2658	0.81	-0.1
3,182,484	+		Sama_2658	0.81	+1.7
3,182,485	-		Sama_2658	0.81	+0.4
3,182,553	+				+1.0
3,182,553	+				-0.3
3,182,553	+				+0.1
3,182,554	-				+0.6
3,182,554	-				-0.3
3,182,554	-				-0.1
3,182,554	-				-0.4
3,182,606	+				+1.5
3,182,606	+				+0.3
3,182,607	-				-1.3
3,182,607	-				+0.2
3,182,607	-				-0.1
3,182,646	+				+0.0
3,182,646	+				+0.7
3,182,647	-				+0.7
3,182,647	-				+0.4
3,182,699	-				+0.1
3,182,699	-				+1.7
3,182,768	-				+0.3
3,182,773	-				+0.2
3,182,783	+				-1.6
3,182,783	+				+0.9
3,182,783	+				-0.8
3,182,794	+				+0.2
3,182,795	-				-2.6
3,182,835	-				+0.4
3,182,840	+				-1.4
3,182,841	-				-0.1
3,182,858	+				+0.4
3,182,859	-				-1.6
3,182,868	+				-0.6
3,182,868	+				-0.6
3,182,868	+				-0.8
3,182,868	+				+0.2
3,182,868	+				-0.6
3,182,868	+				-0.8
3,182,868	+				+1.3
3,182,869	-				-0.3
3,182,869	-				-0.8
3,182,869	-				+0.7
3,182,869	-				-0.3
3,182,869	-				+0.2
3,182,869	-				-0.6
3,182,869	-				+0.6
3,182,869	-				+0.4
3,182,869	-				-0.2
3,182,869	-				-0.4
3,182,869	-				+0.2
3,182,869	-				+0.4
3,182,869	-				+1.5
3,182,869	-				+0.0
3,182,869	-				-0.7
3,182,869	-				+0.3
3,182,869	-				-0.2
3,182,870	+				-0.8
3,182,870	+				+0.3
3,182,870	+				+1.9
3,182,870	+				+0.3
3,182,870	+				-0.6
3,182,870	+				+1.2
3,182,870	+				-0.8
3,182,870	+				-0.3
3,182,870	+				+0.4
3,182,870	+				-1.1
3,182,871	-				+0.6
3,182,871	-				-1.4
3,182,871	-				+0.1
3,182,871	-				+0.3
3,182,871	-				-0.9
3,182,871	-				+0.4
3,182,871	-				+0.6
3,182,880	+				+0.6
3,182,881	-				-0.4
3,182,896	-				-1.3
3,182,903	-				-0.3
3,182,943	-				-0.1
3,182,955	+				+0.2
3,182,955	+				+0.2
3,182,955	+				+0.3
3,182,955	+				-0.5
3,182,955	+				+0.5
3,182,956	-				-0.6
3,182,956	-				+0.5
3,182,956	-				-0.3
3,182,956	-				-0.1
3,182,956	-				-0.4
3,182,956	-				-0.3
3,182,974	+		Sama_2659	0.13	-1.3
3,182,974	+		Sama_2659	0.13	-0.1
3,182,975	-		Sama_2659	0.13	-0.7
3,182,989	-		Sama_2659	0.16	+0.7
3,183,084	-		Sama_2659	0.33	+1.4
3,183,097	+		Sama_2659	0.35	-1.1
3,183,098	-		Sama_2659	0.35	+0.0
3,183,098	-		Sama_2659	0.35	-0.2
3,183,098	-		Sama_2659	0.35	-1.0
3,183,182	-		Sama_2659	0.50	+0.2
3,183,237	-		Sama_2659	0.60	-0.7
3,183,267	+		Sama_2659	0.65	-0.7
3,183,267	+		Sama_2659	0.65	-1.1
3,183,267	+		Sama_2659	0.65	-0.8
3,183,268	-		Sama_2659	0.65	+0.7
3,183,268	-		Sama_2659	0.65	-0.4
3,183,268	-		Sama_2659	0.65	-0.7
3,183,277	+		Sama_2659	0.67	-0.1
3,183,278	-		Sama_2659	0.67	+1.3
3,183,278	-		Sama_2659	0.67	+0.9
3,183,278	-		Sama_2659	0.67	-0.7
3,183,278	-		Sama_2659	0.67	+0.7
3,183,278	-		Sama_2659	0.67	-0.3
3,183,278	-		Sama_2659	0.67	-0.8
3,183,279	+		Sama_2659	0.67	+0.7
3,183,279	+		Sama_2659	0.67	+0.7
3,183,279	+		Sama_2659	0.67	-0.8
3,183,279	+		Sama_2659	0.67	+0.7
3,183,280	-		Sama_2659	0.68	+0.3
3,183,280	-		Sama_2659	0.68	+0.3
3,183,280	-		Sama_2659	0.68	-0.5
3,183,280	-		Sama_2659	0.68	+0.4
3,183,280	-		Sama_2659	0.68	-0.0
3,183,280	-		Sama_2659	0.68	+0.7
3,183,280	-		Sama_2659	0.68	+0.2
3,183,280	-		Sama_2659	0.68	-0.2
3,183,280	-		Sama_2659	0.68	-1.3
3,183,280	-		Sama_2659	0.68	-0.8
3,183,280	-		Sama_2659	0.68	+0.2
3,183,280	-		Sama_2659	0.68	-0.3
3,183,280	-		Sama_2659	0.68	-0.3
3,183,280	-		Sama_2659	0.68	-0.6
3,183,280	-		Sama_2659	0.68	+0.2
3,183,280	-		Sama_2659	0.68	-0.1
3,183,280	-		Sama_2659	0.68	-0.2
3,183,280	-		Sama_2659	0.68	-1.1
3,183,284	+		Sama_2659	0.68	-0.3
3,183,284	+		Sama_2659	0.68	-2.1
3,183,285	-		Sama_2659	0.68	+1.7
3,183,289	-		Sama_2659	0.69	-0.3
3,183,289	-		Sama_2659	0.69	-0.0
3,183,289	-		Sama_2659	0.69	-0.9
3,183,321	+		Sama_2659	0.75	-0.4
3,183,321	+		Sama_2659	0.75	-1.4
3,183,321	+		Sama_2659	0.75	+0.4
3,183,322	-		Sama_2659	0.75	-0.3
3,183,322	-		Sama_2659	0.75	+0.0
3,183,322	-		Sama_2659	0.75	-0.8
3,183,322	-		Sama_2659	0.75	-1.0
3,183,322	-		Sama_2659	0.75	+1.0
3,183,322	-		Sama_2659	0.75	+0.1
3,183,322	-		Sama_2659	0.75	-0.9
3,183,322	-		Sama_2659	0.75	-0.8
3,183,380	+		Sama_2659	0.85	+0.2
3,183,401	+		Sama_2659	0.89	-0.1
3,183,402	-		Sama_2659	0.89	-1.2
3,183,402	-		Sama_2659	0.89	-0.5
3,183,402	-		Sama_2659	0.89	-0.6
3,183,402	-		Sama_2659	0.89	-0.4
3,183,402	-		Sama_2659	0.89	-0.6
3,183,452	+				+0.5
3,183,452	+				-0.8
3,183,453	-				-0.6
3,183,453	-				-0.4
3,183,514	+				+1.7
3,183,514	+				-0.8
3,183,514	+				-0.8
3,183,514	+				+0.6
3,183,514	+				+0.9
3,183,514	+				-0.7
3,183,514	+				-1.3
3,183,515	-				-0.0
3,183,515	-				-1.1
3,183,515	-				-0.7
3,183,515	-				+0.3
3,183,515	-				+0.9
3,183,515	-				+0.4
3,183,515	-				-0.4
3,183,515	-				+1.3
3,183,515	-				+0.8
3,183,568	+				-0.3
3,183,568	+				+0.5
3,183,568	+				-0.1
3,183,569	-				+0.3
3,183,569	-				-0.3
3,183,569	-				+1.1
3,183,569	-				-0.6
3,183,570	+				+0.3
3,183,570	+				-0.6
3,183,570	+				-0.8
3,183,570	+				-1.1
3,183,570	+				-0.6
3,183,571	-				+0.3
3,183,571	-				-0.3
3,183,571	-				-1.4
3,183,571	-				-1.3
3,183,571	-				+1.3
3,183,571	-				-1.0
3,183,571	-				-0.6
3,183,605	-				-0.3
3,183,653	+				+0.3
3,183,656	+				-0.5
3,183,657	-				+0.4
3,183,657	-				+0.4
3,183,804	+		Sama_2660	0.18	-0.8
3,183,804	+		Sama_2660	0.18	-0.3
3,183,804	+		Sama_2660	0.18	-0.5
3,183,804	+		Sama_2660	0.18	-0.5
3,183,804	+		Sama_2660	0.18	+0.4
3,183,804	+		Sama_2660	0.18	-0.1
3,183,804	+		Sama_2660	0.18	-0.7
3,183,804	+		Sama_2660	0.18	+0.8
3,183,805	-		Sama_2660	0.18	+0.2
3,183,805	-		Sama_2660	0.18	-0.3
3,183,807	+		Sama_2660	0.18	+0.7
3,183,808	-		Sama_2660	0.18	+0.6
3,183,808	-		Sama_2660	0.18	+0.7
3,183,871	+		Sama_2660	0.24	+0.4
3,183,871	+		Sama_2660	0.24	+0.7
3,183,872	-		Sama_2660	0.24	+1.1
3,183,895	-		Sama_2660	0.26	+1.4
3,183,912	+		Sama_2660	0.27	+1.2
3,184,051	+		Sama_2660	0.40	-1.6
3,184,052	-		Sama_2660	0.40	-0.3
3,184,293	+		Sama_2660	0.61	+1.8
3,184,293	+		Sama_2660	0.61	+0.5
3,184,293	+		Sama_2660	0.61	+0.2
3,184,294	-		Sama_2660	0.61	+0.0
3,184,294	-		Sama_2660	0.61	+0.2
3,184,294	-		Sama_2660	0.61	-0.6
3,184,294	-		Sama_2660	0.61	-0.4
3,184,294	-		Sama_2660	0.61	-0.6
3,184,300	-		Sama_2660	0.62	+0.5
3,184,300	-		Sama_2660	0.62	-0.4
3,184,313	-		Sama_2660	0.63	+0.3
3,184,369	+		Sama_2660	0.68	+0.0
3,184,369	+		Sama_2660	0.68	+0.4
3,184,370	-		Sama_2660	0.68	-0.1
3,184,370	-		Sama_2660	0.68	-1.0
3,184,370	-		Sama_2660	0.68	-1.3
3,184,394	+		Sama_2660	0.70	-0.3
3,184,394	+		Sama_2660	0.70	-0.3
3,184,394	+		Sama_2660	0.70	-1.3
3,184,394	+		Sama_2660	0.70	-1.6
3,184,394	+		Sama_2660	0.70	+1.2
3,184,394	+		Sama_2660	0.70	+1.7
3,184,394	+		Sama_2660	0.70	+0.5
3,184,394	+		Sama_2660	0.70	-0.3
3,184,394	+		Sama_2660	0.70	-0.5
3,184,394	+		Sama_2660	0.70	-0.4
3,184,394	+		Sama_2660	0.70	-1.5
3,184,395	-		Sama_2660	0.70	+0.7
3,184,395	-		Sama_2660	0.70	-0.0
3,184,395	-		Sama_2660	0.70	+0.7
3,184,395	-		Sama_2660	0.70	+0.3
3,184,395	-		Sama_2660	0.70	+0.0
3,184,395	-		Sama_2660	0.70	-0.7
3,184,395	-		Sama_2660	0.70	-0.5
3,184,395	-		Sama_2660	0.70	-0.5
3,184,395	-		Sama_2660	0.70	+0.0
3,184,396	+		Sama_2660	0.70	+1.3
3,184,396	+		Sama_2660	0.70	-0.0
3,184,396	+		Sama_2660	0.70	+0.0
3,184,396	+		Sama_2660	0.70	-0.5
3,184,396	+		Sama_2660	0.70	-1.5
3,184,396	+		Sama_2660	0.70	+0.3
3,184,396	+		Sama_2660	0.70	-0.3
3,184,397	-		Sama_2660	0.71	+0.6
3,184,397	-		Sama_2660	0.71	-1.3
3,184,397	-		Sama_2660	0.71	-0.6
3,184,397	-		Sama_2660	0.71	+0.3
3,184,428	+		Sama_2660	0.73	+0.6
3,184,429	-		Sama_2660	0.73	-0.1