Strain Fitness in Shewanella amazonensis SB2B around Sama_2626

Experiment: acetate 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	acetate 25 mM
3,144,033	+		Sama_2625	0.15	-1.3
3,144,034	-		Sama_2625	0.15	+0.3
3,144,034	-		Sama_2625	0.15	+0.1
3,144,034	-		Sama_2625	0.15	+0.5
3,144,117	+		Sama_2625	0.22	+0.7
3,144,117	+		Sama_2625	0.22	-0.8
3,144,117	+		Sama_2625	0.22	+0.3
3,144,118	-		Sama_2625	0.22	+1.2
3,144,118	-		Sama_2625	0.22	+0.7
3,144,118	-		Sama_2625	0.22	+1.7
3,144,146	+		Sama_2625	0.24	-0.2
3,144,147	-		Sama_2625	0.24	+0.5
3,144,173	+		Sama_2625	0.27	-0.4
3,144,174	-		Sama_2625	0.27	-0.0
3,144,174	-		Sama_2625	0.27	-0.9
3,144,273	+		Sama_2625	0.35	+0.5
3,144,273	+		Sama_2625	0.35	-0.4
3,144,274	-		Sama_2625	0.35	-0.2
3,144,512	-		Sama_2625	0.56	+1.3
3,144,512	-		Sama_2625	0.56	-1.3
3,144,522	+		Sama_2625	0.57	+0.5
3,144,522	+		Sama_2625	0.57	-0.2
3,144,522	+		Sama_2625	0.57	+0.7
3,144,522	+		Sama_2625	0.57	-0.0
3,144,552	+		Sama_2625	0.59	-1.5
3,144,552	+		Sama_2625	0.59	+0.4
3,144,552	+		Sama_2625	0.59	+0.3
3,144,552	+		Sama_2625	0.59	-0.3
3,144,552	+		Sama_2625	0.59	-0.5
3,144,552	+		Sama_2625	0.59	+0.6
3,144,553	-		Sama_2625	0.59	+0.2
3,144,553	-		Sama_2625	0.59	-0.0
3,144,553	-		Sama_2625	0.59	-0.4
3,144,560	+		Sama_2625	0.60	-1.0
3,144,609	-		Sama_2625	0.64	-0.7
3,144,618	+		Sama_2625	0.65	-0.3
3,144,619	-		Sama_2625	0.65	-0.5
3,144,619	-		Sama_2625	0.65	-0.4
3,144,619	-		Sama_2625	0.65	-0.9
3,144,713	-		Sama_2625	0.73	-0.4
3,144,713	-		Sama_2625	0.73	+0.5
3,144,726	-		Sama_2625	0.74	-0.1
3,144,797	+		Sama_2625	0.80	+0.7
3,144,798	-		Sama_2625	0.81	+1.6
3,144,798	-		Sama_2625	0.81	-1.3
3,144,854	+		Sama_2625	0.85	-0.5
3,144,854	+		Sama_2625	0.85	-0.4
3,144,855	-		Sama_2625	0.85	-1.0
3,144,859	+		Sama_2625	0.86	-1.0
3,144,859	+		Sama_2625	0.86	-1.1
3,144,860	-		Sama_2625	0.86	+0.6
3,144,860	-		Sama_2625	0.86	-1.6
3,144,888	-		Sama_2625	0.88	-0.5
3,144,888	-		Sama_2625	0.88	+0.9
3,144,888	-		Sama_2625	0.88	-0.7
3,144,888	-		Sama_2625	0.88	-0.3
3,145,005	-				+0.2
3,145,021	-				-0.5
3,145,021	-				-2.1
3,145,021	-				+0.6
3,145,021	-				-0.1
3,145,021	-				-0.6
3,145,027	+				-0.9
3,145,027	+				+0.1
3,145,028	-				+0.7
3,145,028	-				-0.6
3,145,070	+		Sama_2626	0.24	-0.7
3,145,070	+		Sama_2626	0.24	-0.3
3,145,070	+		Sama_2626	0.24	-0.7
3,145,071	-		Sama_2626	0.25	-0.6
3,145,208	+				+0.1
3,145,208	+				-0.9
3,145,208	+				-1.7
3,145,209	-				+0.4
3,145,216	-				-0.8
3,145,241	+				-0.3
3,145,241	+				-0.6
3,145,242	-				+1.1
3,145,259	+				+0.1
3,145,259	+				+1.2
3,145,260	-				+0.0
3,145,260	-				+0.6
3,145,281	+				+0.1
3,145,281	+				+0.3
3,145,282	-				+0.9
3,145,282	-				+0.9
3,145,282	-				+0.1
3,145,289	+				-0.4
3,145,289	+				-0.3
3,145,290	-				+0.1
3,145,290	-				+0.3
3,145,290	-				-0.1
3,145,290	-				-1.3
3,145,290	-				+0.4
3,145,290	-				-0.7
3,145,290	-				-0.5
3,145,290	-				+0.8
3,145,290	-				-0.9
3,145,290	-				-0.1
3,145,291	+				-0.1
3,145,291	+				-0.6
3,145,292	-				-0.5
3,145,292	-				-0.9
3,145,292	-				-0.7
3,145,310	+				+0.4
3,145,360	+				+0.4
3,145,361	-				+1.1
3,145,361	-				-1.9
3,145,376	+				+0.7
3,145,376	+				+0.2
3,145,377	-				-0.6
3,145,441	+				+0.4
3,145,441	+				-0.5
3,145,512	+				+0.7
3,145,513	-				-0.4
3,145,540	-				-0.0
3,145,600	+		Sama_2627	0.13	+0.1
3,145,601	-		Sama_2627	0.13	+0.3
3,145,601	-		Sama_2627	0.13	+0.4
3,145,631	+		Sama_2627	0.14	+0.4
3,145,631	+		Sama_2627	0.14	+1.0
3,145,631	+		Sama_2627	0.14	-1.3
3,145,632	-		Sama_2627	0.14	+1.0
3,145,632	-		Sama_2627	0.14	-1.3
3,145,632	-		Sama_2627	0.14	-0.6
3,145,632	-		Sama_2627	0.14	-0.3
3,145,632	-		Sama_2627	0.14	-0.3
3,145,632	-		Sama_2627	0.14	+0.0
3,145,632	-		Sama_2627	0.14	-0.1
3,145,632	-		Sama_2627	0.14	+0.1
3,145,632	-		Sama_2627	0.14	+0.3
3,145,632	-		Sama_2627	0.14	-0.8
3,145,632	-		Sama_2627	0.14	+1.1
3,145,642	+		Sama_2627	0.14	+0.7
3,145,643	-		Sama_2627	0.14	+0.7
3,145,643	-		Sama_2627	0.14	+0.3
3,145,652	-		Sama_2627	0.15	-2.0
3,145,652	-		Sama_2627	0.15	+0.4
3,145,653	+		Sama_2627	0.15	+1.1
3,145,653	+		Sama_2627	0.15	+1.2
3,145,653	+		Sama_2627	0.15	+1.7
3,145,653	+		Sama_2627	0.15	+1.4
3,145,653	+		Sama_2627	0.15	+0.3
3,145,653	+		Sama_2627	0.15	+0.9
3,145,734	+		Sama_2627	0.18	-0.0
3,145,734	+		Sama_2627	0.18	+0.1
3,145,735	-		Sama_2627	0.18	-0.2
3,145,799	-		Sama_2627	0.21	+0.7
3,145,807	+		Sama_2627	0.22	-0.7
3,145,812	-		Sama_2627	0.22	+0.2
3,145,812	-		Sama_2627	0.22	+0.4
3,145,842	-		Sama_2627	0.23	-0.1
3,145,862	-		Sama_2627	0.24	+1.3
3,145,882	+		Sama_2627	0.25	+0.4
3,145,882	+		Sama_2627	0.25	+0.1
3,145,883	-		Sama_2627	0.25	-0.5
3,145,968	+		Sama_2627	0.29	-2.1
3,145,968	+		Sama_2627	0.29	+0.1
3,145,990	+		Sama_2627	0.30	+0.7
3,145,991	-		Sama_2627	0.30	+0.3
3,145,991	-		Sama_2627	0.30	+1.1
3,146,016	+		Sama_2627	0.31	-0.2
3,146,049	+		Sama_2627	0.32	-0.3
3,146,049	+		Sama_2627	0.32	+2.1
3,146,106	+		Sama_2627	0.35	-0.6
3,146,106	+		Sama_2627	0.35	-0.9
3,146,106	+		Sama_2627	0.35	-1.9
3,146,107	-		Sama_2627	0.35	+0.5
3,146,107	-		Sama_2627	0.35	-1.9
3,146,116	+		Sama_2627	0.35	-2.7
3,146,116	+		Sama_2627	0.35	+1.5
3,146,122	+		Sama_2627	0.35	+1.3
3,146,141	+		Sama_2627	0.36	-0.4
3,146,182	+		Sama_2627	0.38	-0.1
3,146,183	-		Sama_2627	0.38	+0.3
3,146,214	+		Sama_2627	0.40	-0.2