Strain Fitness in Shewanella amazonensis SB2B around Sama_0789

Experiment: Cholin acetate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0788 and Sama_0789 are separated by 257 nucleotidesSama_0789 and valS are separated by 104 nucleotides Sama_0788: Sama_0788 - transcriptional regulator (RefSeq), at 970,492 to 971,304 _0788 Sama_0789: Sama_0789 - aspartate ammonia-lyase (RefSeq), at 971,562 to 972,980 _0789 Sama_0790: valS - valyl-tRNA synthetase (RefSeq), at 973,085 to 975,946 valS Position (kb) 971 972 973Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 970.571 kb on - strandat 970.644 kb on - strand, within Sama_0788at 970.746 kb on + strand, within Sama_0788at 970.752 kb on + strand, within Sama_0788at 970.752 kb on + strand, within Sama_0788at 970.753 kb on - strand, within Sama_0788at 970.753 kb on - strand, within Sama_0788at 970.788 kb on - strand, within Sama_0788at 970.788 kb on - strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.836 kb on - strand, within Sama_0788at 970.839 kb on + strand, within Sama_0788at 970.839 kb on + strand, within Sama_0788at 970.839 kb on + strand, within Sama_0788at 970.839 kb on + strand, within Sama_0788at 970.840 kb on - strand, within Sama_0788at 970.840 kb on - strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.848 kb on - strand, within Sama_0788at 970.892 kb on + strand, within Sama_0788at 970.892 kb on + strand, within Sama_0788at 970.892 kb on + strand, within Sama_0788at 970.893 kb on - strand, within Sama_0788at 970.893 kb on - strand, within Sama_0788at 970.893 kb on - strand, within Sama_0788at 970.895 kb on + strand, within Sama_0788at 970.895 kb on + strand, within Sama_0788at 970.895 kb on + strand, within Sama_0788at 970.895 kb on + strand, within Sama_0788at 970.896 kb on - strand, within Sama_0788at 970.896 kb on - strand, within Sama_0788at 970.896 kb on - strand, within Sama_0788at 970.896 kb on - strand, within Sama_0788at 970.970 kb on + strand, within Sama_0788at 970.971 kb on - strand, within Sama_0788at 970.971 kb on - strand, within Sama_0788at 970.980 kb on - strand, within Sama_0788at 970.980 kb on - strand, within Sama_0788at 970.991 kb on + strand, within Sama_0788at 970.991 kb on + strand, within Sama_0788at 970.991 kb on + strand, within Sama_0788at 970.992 kb on - strand, within Sama_0788at 970.992 kb on - strand, within Sama_0788at 970.992 kb on - strand, within Sama_0788at 970.992 kb on - strand, within Sama_0788at 970.995 kb on + strand, within Sama_0788at 970.995 kb on + strand, within Sama_0788at 970.995 kb on + strand, within Sama_0788at 971.011 kb on + strand, within Sama_0788at 971.012 kb on - strand, within Sama_0788at 971.088 kb on + strand, within Sama_0788at 971.089 kb on - strand, within Sama_0788at 971.089 kb on - strand, within Sama_0788at 971.089 kb on - strand, within Sama_0788at 971.089 kb on - strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.167 kb on - strand, within Sama_0788at 971.167 kb on - strand, within Sama_0788at 971.183 kb on + strand, within Sama_0788at 971.184 kb on - strand, within Sama_0788at 971.258 kb on + strandat 971.259 kb on - strandat 971.259 kb on - strandat 971.261 kb on + strandat 971.261 kb on + strandat 971.261 kb on + strandat 971.261 kb on + strandat 971.262 kb on - strandat 971.262 kb on - strandat 971.320 kb on - strandat 971.358 kb on - strandat 971.370 kb on + strandat 971.371 kb on - strandat 971.374 kb on + strandat 971.375 kb on - strandat 971.468 kb on + strandat 971.488 kb on + strandat 971.558 kb on - strandat 971.558 kb on - strandat 971.567 kb on + strandat 971.568 kb on - strandat 971.573 kb on + strandat 971.573 kb on + strandat 971.574 kb on - strandat 971.696 kb on + strandat 971.717 kb on + strand, within Sama_0789at 972.067 kb on + strand, within Sama_0789at 972.068 kb on - strand, within Sama_0789at 972.095 kb on + strand, within Sama_0789at 972.185 kb on + strand, within Sama_0789at 972.185 kb on + strand, within Sama_0789at 972.185 kb on + strand, within Sama_0789at 972.196 kb on + strand, within Sama_0789at 972.196 kb on + strand, within Sama_0789at 972.196 kb on + strand, within Sama_0789at 972.196 kb on + strand, within Sama_0789at 972.267 kb on - strand, within Sama_0789at 972.269 kb on + strand, within Sama_0789at 972.285 kb on + strand, within Sama_0789at 972.285 kb on + strand, within Sama_0789at 972.301 kb on + strand, within Sama_0789at 972.320 kb on + strand, within Sama_0789at 972.404 kb on + strand, within Sama_0789at 972.404 kb on + strand, within Sama_0789at 972.437 kb on + strand, within Sama_0789at 972.545 kb on + strand, within Sama_0789at 972.660 kb on + strand, within Sama_0789at 972.662 kb on + strand, within Sama_0789at 972.674 kb on + strand, within Sama_0789at 972.674 kb on + strand, within Sama_0789at 972.722 kb on + strand, within Sama_0789at 972.784 kb on + strand, within Sama_0789at 972.784 kb on + strand, within Sama_0789at 972.784 kb on + strand, within Sama_0789at 972.784 kb on + strand, within Sama_0789at 972.784 kb on + strand, within Sama_0789at 972.785 kb on - strand, within Sama_0789at 972.896 kb on + strandat 972.923 kb on - strandat 972.999 kb on - strandat 973.069 kb on + strandat 973.070 kb on - strandat 973.070 kb on - strandat 973.070 kb on - strandat 973.070 kb on - strandat 973.076 kb on + strandat 973.076 kb on + strandat 973.076 kb on + strandat 973.076 kb on + strandat 973.076 kb on + strandat 973.076 kb on + strandat 973.076 kb on + strandat 973.077 kb on - strandat 973.077 kb on - strandat 973.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 25 mM
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970,571 - -1.0
970,644 - Sama_0788 0.19 -0.4
970,746 + Sama_0788 0.31 +0.4
970,752 + Sama_0788 0.32 -0.7
970,752 + Sama_0788 0.32 +1.6
970,753 - Sama_0788 0.32 -0.5
970,753 - Sama_0788 0.32 -1.0
970,788 - Sama_0788 0.36 +0.1
970,788 - Sama_0788 0.36 -0.7
970,835 + Sama_0788 0.42 -1.1
970,835 + Sama_0788 0.42 -1.7
970,835 + Sama_0788 0.42 +0.5
970,835 + Sama_0788 0.42 -0.5
970,835 + Sama_0788 0.42 -1.5
970,836 - Sama_0788 0.42 +0.1
970,839 + Sama_0788 0.43 -0.6
970,839 + Sama_0788 0.43 -0.9
970,839 + Sama_0788 0.43 -0.5
970,839 + Sama_0788 0.43 -2.3
970,840 - Sama_0788 0.43 -0.9
970,840 - Sama_0788 0.43 -0.6
970,847 + Sama_0788 0.44 -1.2
970,847 + Sama_0788 0.44 -0.7
970,847 + Sama_0788 0.44 +0.4
970,847 + Sama_0788 0.44 -0.7
970,847 + Sama_0788 0.44 -0.9
970,847 + Sama_0788 0.44 -0.4
970,848 - Sama_0788 0.44 -0.7
970,892 + Sama_0788 0.49 -0.5
970,892 + Sama_0788 0.49 -1.0
970,892 + Sama_0788 0.49 -0.2
970,893 - Sama_0788 0.49 +2.1
970,893 - Sama_0788 0.49 -1.0
970,893 - Sama_0788 0.49 -0.5
970,895 + Sama_0788 0.50 -1.9
970,895 + Sama_0788 0.50 -0.5
970,895 + Sama_0788 0.50 -2.3
970,895 + Sama_0788 0.50 -2.5
970,896 - Sama_0788 0.50 -1.0
970,896 - Sama_0788 0.50 -1.5
970,896 - Sama_0788 0.50 -0.5
970,896 - Sama_0788 0.50 -0.6
970,970 + Sama_0788 0.59 +0.5
970,971 - Sama_0788 0.59 +0.5
970,971 - Sama_0788 0.59 -0.9
970,980 - Sama_0788 0.60 +0.1
970,980 - Sama_0788 0.60 -1.2
970,991 + Sama_0788 0.61 -0.3
970,991 + Sama_0788 0.61 -1.1
970,991 + Sama_0788 0.61 -0.6
970,992 - Sama_0788 0.62 +1.1
970,992 - Sama_0788 0.62 -0.5
970,992 - Sama_0788 0.62 -0.5
970,992 - Sama_0788 0.62 +0.9
970,995 + Sama_0788 0.62 -0.9
970,995 + Sama_0788 0.62 -1.5
970,995 + Sama_0788 0.62 +0.3
971,011 + Sama_0788 0.64 +0.5
971,012 - Sama_0788 0.64 -0.7
971,088 + Sama_0788 0.73 +0.1
971,089 - Sama_0788 0.73 -0.2
971,089 - Sama_0788 0.73 -0.5
971,089 - Sama_0788 0.73 -0.9
971,089 - Sama_0788 0.73 -1.2
971,166 + Sama_0788 0.83 -1.5
971,166 + Sama_0788 0.83 +0.3
971,166 + Sama_0788 0.83 -1.5
971,166 + Sama_0788 0.83 +0.6
971,166 + Sama_0788 0.83 -0.2
971,166 + Sama_0788 0.83 +0.1
971,166 + Sama_0788 0.83 -1.0
971,166 + Sama_0788 0.83 -1.9
971,167 - Sama_0788 0.83 +0.3
971,167 - Sama_0788 0.83 -0.9
971,183 + Sama_0788 0.85 -0.3
971,184 - Sama_0788 0.85 -1.7
971,258 + -1.5
971,259 - -2.9
971,259 - +0.6
971,261 + -0.3
971,261 + -1.2
971,261 + -0.1
971,261 + -1.9
971,262 - -0.1
971,262 - -0.2
971,320 - -0.7
971,358 - -0.4
971,370 + -0.9
971,371 - -0.7
971,374 + +0.4
971,375 - -1.7
971,468 + -0.2
971,488 + -0.5
971,558 - -1.5
971,558 - +0.1
971,567 + +0.7
971,568 - -0.1
971,573 + -1.8
971,573 + -0.5
971,574 - +0.9
971,696 + +0.1
971,717 + Sama_0789 0.11 -0.8
972,067 + Sama_0789 0.36 -1.0
972,068 - Sama_0789 0.36 +0.5
972,095 + Sama_0789 0.38 -0.5
972,185 + Sama_0789 0.44 -0.7
972,185 + Sama_0789 0.44 -0.3
972,185 + Sama_0789 0.44 +0.7
972,196 + Sama_0789 0.45 -0.8
972,196 + Sama_0789 0.45 -1.2
972,196 + Sama_0789 0.45 -0.1
972,196 + Sama_0789 0.45 -1.1
972,267 - Sama_0789 0.50 -1.5
972,269 + Sama_0789 0.50 -1.3
972,285 + Sama_0789 0.51 -1.9
972,285 + Sama_0789 0.51 +0.4
972,301 + Sama_0789 0.52 -0.9
972,320 + Sama_0789 0.53 -0.5
972,404 + Sama_0789 0.59 -0.7
972,404 + Sama_0789 0.59 +1.4
972,437 + Sama_0789 0.62 -1.3
972,545 + Sama_0789 0.69 -0.9
972,660 + Sama_0789 0.77 -2.5
972,662 + Sama_0789 0.78 -0.5
972,674 + Sama_0789 0.78 -1.1
972,674 + Sama_0789 0.78 +0.1
972,722 + Sama_0789 0.82 -0.9
972,784 + Sama_0789 0.86 -0.4
972,784 + Sama_0789 0.86 -1.1
972,784 + Sama_0789 0.86 -1.9
972,784 + Sama_0789 0.86 -1.5
972,784 + Sama_0789 0.86 +2.1
972,785 - Sama_0789 0.86 -2.3
972,896 + -1.7
972,923 - +0.1
972,999 - -0.9
973,069 + +0.1
973,070 - +0.1
973,070 - +0.2
973,070 - +0.9
973,070 - +0.0
973,076 + +0.4
973,076 + +0.8
973,076 + -1.1
973,076 + -1.1
973,076 + +0.7
973,076 + -1.8
973,076 + -0.9
973,077 - +0.3
973,077 - -1.2
973,077 - -1.3

Or see this region's nucleotide sequence