Strain Fitness in Shewanella amazonensis SB2B around Sama_0788

Experiment: Cholin acetate 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0787 and Sama_0788 are separated by 88 nucleotidesSama_0788 and Sama_0789 are separated by 257 nucleotides Sama_0787: Sama_0787 - peptidase A1, pepsin (RefSeq), at 969,066 to 970,403 _0787 Sama_0788: Sama_0788 - transcriptional regulator (RefSeq), at 970,492 to 971,304 _0788 Sama_0789: Sama_0789 - aspartate ammonia-lyase (RefSeq), at 971,562 to 972,980 _0789 Position (kb) 970 971 972Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 969.518 kb on + strand, within Sama_0787at 969.651 kb on + strand, within Sama_0787at 969.652 kb on - strand, within Sama_0787at 969.652 kb on - strand, within Sama_0787at 969.664 kb on + strand, within Sama_0787at 969.664 kb on + strand, within Sama_0787at 969.664 kb on + strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.665 kb on - strand, within Sama_0787at 969.668 kb on - strand, within Sama_0787at 969.682 kb on - strand, within Sama_0787at 969.876 kb on - strand, within Sama_0787at 969.876 kb on - strand, within Sama_0787at 969.923 kb on + strand, within Sama_0787at 969.923 kb on + strand, within Sama_0787at 969.923 kb on + strand, within Sama_0787at 969.944 kb on + strand, within Sama_0787at 969.945 kb on - strand, within Sama_0787at 969.999 kb on + strand, within Sama_0787at 970.000 kb on - strand, within Sama_0787at 970.000 kb on - strand, within Sama_0787at 970.018 kb on + strand, within Sama_0787at 970.018 kb on + strand, within Sama_0787at 970.018 kb on + strand, within Sama_0787at 970.019 kb on - strand, within Sama_0787at 970.019 kb on - strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.054 kb on + strand, within Sama_0787at 970.055 kb on - strand, within Sama_0787at 970.055 kb on - strand, within Sama_0787at 970.055 kb on - strand, within Sama_0787at 970.055 kb on - strand, within Sama_0787at 970.071 kb on - strand, within Sama_0787at 970.071 kb on - strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.155 kb on + strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.156 kb on - strand, within Sama_0787at 970.198 kb on + strand, within Sama_0787at 970.198 kb on + strand, within Sama_0787at 970.198 kb on + strand, within Sama_0787at 970.198 kb on + strand, within Sama_0787at 970.199 kb on - strand, within Sama_0787at 970.199 kb on - strand, within Sama_0787at 970.199 kb on - strand, within Sama_0787at 970.199 kb on - strand, within Sama_0787at 970.199 kb on - strand, within Sama_0787at 970.238 kb on + strand, within Sama_0787at 970.239 kb on - strand, within Sama_0787at 970.253 kb on + strand, within Sama_0787at 970.253 kb on + strand, within Sama_0787at 970.254 kb on - strand, within Sama_0787at 970.254 kb on - strand, within Sama_0787at 970.255 kb on + strand, within Sama_0787at 970.255 kb on + strand, within Sama_0787at 970.256 kb on - strand, within Sama_0787at 970.269 kb on + strand, within Sama_0787at 970.270 kb on - strandat 970.270 kb on - strandat 970.296 kb on + strandat 970.296 kb on + strandat 970.296 kb on + strandat 970.296 kb on + strandat 970.297 kb on - strandat 970.297 kb on - strandat 970.301 kb on + strandat 970.301 kb on + strandat 970.301 kb on + strandat 970.302 kb on - strandat 970.348 kb on + strandat 970.370 kb on + strandat 970.370 kb on + strandat 970.371 kb on - strandat 970.380 kb on - strandat 970.423 kb on + strandat 970.423 kb on + strandat 970.427 kb on + strandat 970.427 kb on + strandat 970.428 kb on - strandat 970.493 kb on + strandat 970.493 kb on + strandat 970.493 kb on + strandat 970.493 kb on + strandat 970.571 kb on - strandat 970.644 kb on - strand, within Sama_0788at 970.746 kb on + strand, within Sama_0788at 970.752 kb on + strand, within Sama_0788at 970.752 kb on + strand, within Sama_0788at 970.753 kb on - strand, within Sama_0788at 970.753 kb on - strand, within Sama_0788at 970.788 kb on - strand, within Sama_0788at 970.788 kb on - strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.835 kb on + strand, within Sama_0788at 970.836 kb on - strand, within Sama_0788at 970.839 kb on + strand, within Sama_0788at 970.839 kb on + strand, within Sama_0788at 970.839 kb on + strand, within Sama_0788at 970.839 kb on + strand, within Sama_0788at 970.840 kb on - strand, within Sama_0788at 970.840 kb on - strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.847 kb on + strand, within Sama_0788at 970.848 kb on - strand, within Sama_0788at 970.892 kb on + strand, within Sama_0788at 970.892 kb on + strand, within Sama_0788at 970.892 kb on + strand, within Sama_0788at 970.893 kb on - strand, within Sama_0788at 970.893 kb on - strand, within Sama_0788at 970.893 kb on - strand, within Sama_0788at 970.895 kb on + strand, within Sama_0788at 970.895 kb on + strand, within Sama_0788at 970.895 kb on + strand, within Sama_0788at 970.895 kb on + strand, within Sama_0788at 970.896 kb on - strand, within Sama_0788at 970.896 kb on - strand, within Sama_0788at 970.896 kb on - strand, within Sama_0788at 970.896 kb on - strand, within Sama_0788at 970.970 kb on + strand, within Sama_0788at 970.971 kb on - strand, within Sama_0788at 970.971 kb on - strand, within Sama_0788at 970.980 kb on - strand, within Sama_0788at 970.980 kb on - strand, within Sama_0788at 970.991 kb on + strand, within Sama_0788at 970.991 kb on + strand, within Sama_0788at 970.991 kb on + strand, within Sama_0788at 970.992 kb on - strand, within Sama_0788at 970.992 kb on - strand, within Sama_0788at 970.992 kb on - strand, within Sama_0788at 970.992 kb on - strand, within Sama_0788at 970.995 kb on + strand, within Sama_0788at 970.995 kb on + strand, within Sama_0788at 970.995 kb on + strand, within Sama_0788at 971.011 kb on + strand, within Sama_0788at 971.012 kb on - strand, within Sama_0788at 971.088 kb on + strand, within Sama_0788at 971.089 kb on - strand, within Sama_0788at 971.089 kb on - strand, within Sama_0788at 971.089 kb on - strand, within Sama_0788at 971.089 kb on - strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.166 kb on + strand, within Sama_0788at 971.167 kb on - strand, within Sama_0788at 971.167 kb on - strand, within Sama_0788at 971.183 kb on + strand, within Sama_0788at 971.184 kb on - strand, within Sama_0788at 971.258 kb on + strandat 971.259 kb on - strandat 971.259 kb on - strandat 971.261 kb on + strandat 971.261 kb on + strandat 971.261 kb on + strandat 971.261 kb on + strandat 971.262 kb on - strandat 971.262 kb on - strandat 971.320 kb on - strandat 971.358 kb on - strandat 971.370 kb on + strandat 971.371 kb on - strandat 971.374 kb on + strandat 971.375 kb on - strandat 971.468 kb on + strandat 971.488 kb on + strandat 971.558 kb on - strandat 971.558 kb on - strandat 971.567 kb on + strandat 971.568 kb on - strandat 971.573 kb on + strandat 971.573 kb on + strandat 971.574 kb on - strandat 971.696 kb on + strandat 971.717 kb on + strand, within Sama_0789at 972.067 kb on + strand, within Sama_0789at 972.068 kb on - strand, within Sama_0789at 972.095 kb on + strand, within Sama_0789at 972.185 kb on + strand, within Sama_0789at 972.185 kb on + strand, within Sama_0789at 972.185 kb on + strand, within Sama_0789at 972.196 kb on + strand, within Sama_0789at 972.196 kb on + strand, within Sama_0789at 972.196 kb on + strand, within Sama_0789at 972.196 kb on + strand, within Sama_0789at 972.267 kb on - strand, within Sama_0789at 972.269 kb on + strand, within Sama_0789at 972.285 kb on + strand, within Sama_0789at 972.285 kb on + strand, within Sama_0789at 972.301 kb on + strand, within Sama_0789

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 25 mM
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969,518 + Sama_0787 0.34 +0.2
969,651 + Sama_0787 0.44 -1.0
969,652 - Sama_0787 0.44 +0.5
969,652 - Sama_0787 0.44 -0.0
969,664 + Sama_0787 0.45 -0.0
969,664 + Sama_0787 0.45 +0.3
969,664 + Sama_0787 0.45 +0.8
969,665 - Sama_0787 0.45 +1.1
969,665 - Sama_0787 0.45 +0.7
969,665 - Sama_0787 0.45 -0.6
969,665 - Sama_0787 0.45 -1.5
969,665 - Sama_0787 0.45 +0.1
969,665 - Sama_0787 0.45 -0.1
969,665 - Sama_0787 0.45 -2.0
969,668 - Sama_0787 0.45 +0.1
969,682 - Sama_0787 0.46 -1.1
969,876 - Sama_0787 0.61 +1.0
969,876 - Sama_0787 0.61 -0.7
969,923 + Sama_0787 0.64 -0.3
969,923 + Sama_0787 0.64 -1.2
969,923 + Sama_0787 0.64 -0.3
969,944 + Sama_0787 0.66 +0.9
969,945 - Sama_0787 0.66 +0.7
969,999 + Sama_0787 0.70 -0.5
970,000 - Sama_0787 0.70 -1.3
970,000 - Sama_0787 0.70 -1.2
970,018 + Sama_0787 0.71 +0.9
970,018 + Sama_0787 0.71 -1.7
970,018 + Sama_0787 0.71 +0.4
970,019 - Sama_0787 0.71 -0.0
970,019 - Sama_0787 0.71 +1.7
970,054 + Sama_0787 0.74 -1.0
970,054 + Sama_0787 0.74 -0.2
970,054 + Sama_0787 0.74 +0.5
970,054 + Sama_0787 0.74 +1.5
970,054 + Sama_0787 0.74 +0.3
970,055 - Sama_0787 0.74 +0.4
970,055 - Sama_0787 0.74 -0.5
970,055 - Sama_0787 0.74 +1.1
970,055 - Sama_0787 0.74 +1.1
970,071 - Sama_0787 0.75 -1.0
970,071 - Sama_0787 0.75 +0.1
970,155 + Sama_0787 0.81 -0.4
970,155 + Sama_0787 0.81 +0.3
970,155 + Sama_0787 0.81 -0.0
970,155 + Sama_0787 0.81 +1.1
970,155 + Sama_0787 0.81 +0.3
970,155 + Sama_0787 0.81 -0.5
970,155 + Sama_0787 0.81 +0.2
970,155 + Sama_0787 0.81 +1.1
970,155 + Sama_0787 0.81 -0.5
970,155 + Sama_0787 0.81 -0.5
970,155 + Sama_0787 0.81 -0.0
970,155 + Sama_0787 0.81 +0.5
970,155 + Sama_0787 0.81 +0.1
970,155 + Sama_0787 0.81 +0.5
970,155 + Sama_0787 0.81 -0.3
970,155 + Sama_0787 0.81 -1.1
970,156 - Sama_0787 0.81 +0.5
970,156 - Sama_0787 0.81 -0.6
970,156 - Sama_0787 0.81 +1.3
970,156 - Sama_0787 0.81 +0.4
970,156 - Sama_0787 0.81 -0.7
970,156 - Sama_0787 0.81 -1.7
970,156 - Sama_0787 0.81 -0.5
970,156 - Sama_0787 0.81 -1.6
970,156 - Sama_0787 0.81 +0.5
970,156 - Sama_0787 0.81 +0.4
970,198 + Sama_0787 0.85 +0.2
970,198 + Sama_0787 0.85 +1.1
970,198 + Sama_0787 0.85 -0.5
970,198 + Sama_0787 0.85 +1.5
970,199 - Sama_0787 0.85 -0.5
970,199 - Sama_0787 0.85 -0.6
970,199 - Sama_0787 0.85 +0.4
970,199 - Sama_0787 0.85 -0.1
970,199 - Sama_0787 0.85 -0.4
970,238 + Sama_0787 0.88 +0.5
970,239 - Sama_0787 0.88 +0.2
970,253 + Sama_0787 0.89 -0.7
970,253 + Sama_0787 0.89 -1.7
970,254 - Sama_0787 0.89 +1.3
970,254 - Sama_0787 0.89 -0.6
970,255 + Sama_0787 0.89 -0.1
970,255 + Sama_0787 0.89 +1.1
970,256 - Sama_0787 0.89 +0.1
970,269 + Sama_0787 0.90 +1.1
970,270 - -0.2
970,270 - -0.1
970,296 + -0.2
970,296 + -0.5
970,296 + -0.9
970,296 + -0.2
970,297 - -0.3
970,297 - +0.9
970,301 + -0.1
970,301 + +0.1
970,301 + -0.6
970,302 - -0.1
970,348 + +0.7
970,370 + -0.5
970,370 + -1.1
970,371 - +0.5
970,380 - +0.3
970,423 + +1.0
970,423 + -1.0
970,427 + +0.5
970,427 + -0.7
970,428 - -0.7
970,493 + -0.5
970,493 + -0.9
970,493 + +0.8
970,493 + -0.7
970,571 - -1.0
970,644 - Sama_0788 0.19 -0.4
970,746 + Sama_0788 0.31 +0.4
970,752 + Sama_0788 0.32 -0.7
970,752 + Sama_0788 0.32 +1.6
970,753 - Sama_0788 0.32 -0.5
970,753 - Sama_0788 0.32 -1.0
970,788 - Sama_0788 0.36 +0.1
970,788 - Sama_0788 0.36 -0.7
970,835 + Sama_0788 0.42 -1.1
970,835 + Sama_0788 0.42 -1.7
970,835 + Sama_0788 0.42 +0.5
970,835 + Sama_0788 0.42 -0.5
970,835 + Sama_0788 0.42 -1.5
970,836 - Sama_0788 0.42 +0.1
970,839 + Sama_0788 0.43 -0.6
970,839 + Sama_0788 0.43 -0.9
970,839 + Sama_0788 0.43 -0.5
970,839 + Sama_0788 0.43 -2.3
970,840 - Sama_0788 0.43 -0.9
970,840 - Sama_0788 0.43 -0.6
970,847 + Sama_0788 0.44 -1.2
970,847 + Sama_0788 0.44 -0.7
970,847 + Sama_0788 0.44 +0.4
970,847 + Sama_0788 0.44 -0.7
970,847 + Sama_0788 0.44 -0.9
970,847 + Sama_0788 0.44 -0.4
970,848 - Sama_0788 0.44 -0.7
970,892 + Sama_0788 0.49 -0.5
970,892 + Sama_0788 0.49 -1.0
970,892 + Sama_0788 0.49 -0.2
970,893 - Sama_0788 0.49 +2.1
970,893 - Sama_0788 0.49 -1.0
970,893 - Sama_0788 0.49 -0.5
970,895 + Sama_0788 0.50 -1.9
970,895 + Sama_0788 0.50 -0.5
970,895 + Sama_0788 0.50 -2.3
970,895 + Sama_0788 0.50 -2.5
970,896 - Sama_0788 0.50 -1.0
970,896 - Sama_0788 0.50 -1.5
970,896 - Sama_0788 0.50 -0.5
970,896 - Sama_0788 0.50 -0.6
970,970 + Sama_0788 0.59 +0.5
970,971 - Sama_0788 0.59 +0.5
970,971 - Sama_0788 0.59 -0.9
970,980 - Sama_0788 0.60 +0.1
970,980 - Sama_0788 0.60 -1.2
970,991 + Sama_0788 0.61 -0.3
970,991 + Sama_0788 0.61 -1.1
970,991 + Sama_0788 0.61 -0.6
970,992 - Sama_0788 0.62 +1.1
970,992 - Sama_0788 0.62 -0.5
970,992 - Sama_0788 0.62 -0.5
970,992 - Sama_0788 0.62 +0.9
970,995 + Sama_0788 0.62 -0.9
970,995 + Sama_0788 0.62 -1.5
970,995 + Sama_0788 0.62 +0.3
971,011 + Sama_0788 0.64 +0.5
971,012 - Sama_0788 0.64 -0.7
971,088 + Sama_0788 0.73 +0.1
971,089 - Sama_0788 0.73 -0.2
971,089 - Sama_0788 0.73 -0.5
971,089 - Sama_0788 0.73 -0.9
971,089 - Sama_0788 0.73 -1.2
971,166 + Sama_0788 0.83 -1.5
971,166 + Sama_0788 0.83 +0.3
971,166 + Sama_0788 0.83 -1.5
971,166 + Sama_0788 0.83 +0.6
971,166 + Sama_0788 0.83 -0.2
971,166 + Sama_0788 0.83 +0.1
971,166 + Sama_0788 0.83 -1.0
971,166 + Sama_0788 0.83 -1.9
971,167 - Sama_0788 0.83 +0.3
971,167 - Sama_0788 0.83 -0.9
971,183 + Sama_0788 0.85 -0.3
971,184 - Sama_0788 0.85 -1.7
971,258 + -1.5
971,259 - -2.9
971,259 - +0.6
971,261 + -0.3
971,261 + -1.2
971,261 + -0.1
971,261 + -1.9
971,262 - -0.1
971,262 - -0.2
971,320 - -0.7
971,358 - -0.4
971,370 + -0.9
971,371 - -0.7
971,374 + +0.4
971,375 - -1.7
971,468 + -0.2
971,488 + -0.5
971,558 - -1.5
971,558 - +0.1
971,567 + +0.7
971,568 - -0.1
971,573 + -1.8
971,573 + -0.5
971,574 - +0.9
971,696 + +0.1
971,717 + Sama_0789 0.11 -0.8
972,067 + Sama_0789 0.36 -1.0
972,068 - Sama_0789 0.36 +0.5
972,095 + Sama_0789 0.38 -0.5
972,185 + Sama_0789 0.44 -0.7
972,185 + Sama_0789 0.44 -0.3
972,185 + Sama_0789 0.44 +0.7
972,196 + Sama_0789 0.45 -0.8
972,196 + Sama_0789 0.45 -1.2
972,196 + Sama_0789 0.45 -0.1
972,196 + Sama_0789 0.45 -1.1
972,267 - Sama_0789 0.50 -1.5
972,269 + Sama_0789 0.50 -1.3
972,285 + Sama_0789 0.51 -1.9
972,285 + Sama_0789 0.51 +0.4
972,301 + Sama_0789 0.52 -0.9

Or see this region's nucleotide sequence