Experiment: Cholin acetate 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobT and Sama_0763 are separated by 13 nucleotides Sama_0763 and Sama_0764 overlap by 4 nucleotides Sama_0764 and Sama_0765 are separated by 3 nucleotides
Sama_0762: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 945,129 to 946,163
cobT
Sama_0763: Sama_0763 - cobalamin 5'-phosphate synthase (RefSeq), at 946,177 to 946,959
_0763
Sama_0764: Sama_0764 - cobinamide kinase/cobinamide phosphate guanylyltransferase (RefSeq), at 946,956 to 947,501
_0764
Sama_0765: Sama_0765 - cobyric acid synthase (RefSeq), at 947,505 to 949,013
_0765
Position (kb) 946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 945.191 kb on + strand at 945.192 kb on - strand at 945.192 kb on - strand at 945.295 kb on + strand, within cobT at 945.295 kb on + strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.314 kb on + strand, within cobT at 945.315 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.353 kb on - strand, within cobT at 945.449 kb on + strand, within cobT at 945.449 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.737 kb on + strand, within cobT at 945.738 kb on - strand, within cobT at 945.785 kb on + strand, within cobT at 945.785 kb on + strand, within cobT at 945.786 kb on - strand, within cobT at 945.902 kb on + strand, within cobT at 945.903 kb on - strand, within cobT at 945.903 kb on - strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.958 kb on - strand, within cobT at 945.958 kb on - strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.030 kb on + strand, within cobT at 946.044 kb on - strand, within cobT at 946.061 kb on + strand at 946.062 kb on - strand at 946.062 kb on - strand at 946.062 kb on + strand at 946.110 kb on + strand at 946.111 kb on - strand at 946.145 kb on + strand at 946.153 kb on + strand at 946.154 kb on - strand at 946.154 kb on - strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.188 kb on + strand at 946.230 kb on + strand at 946.250 kb on + strand at 946.262 kb on - strand, within Sama_0763 at 946.278 kb on - strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.359 kb on + strand, within Sama_0763 at 946.359 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.486 kb on - strand, within Sama_0763 at 946.522 kb on + strand, within Sama_0763 at 946.522 kb on + strand, within Sama_0763 at 946.523 kb on - strand, within Sama_0763 at 946.523 kb on - strand, within Sama_0763 at 946.629 kb on + strand, within Sama_0763 at 946.630 kb on - strand, within Sama_0763 at 946.630 kb on - strand, within Sama_0763 at 946.634 kb on + strand, within Sama_0763 at 946.634 kb on + strand, within Sama_0763 at 946.635 kb on - strand, within Sama_0763 at 946.656 kb on + strand, within Sama_0763 at 946.657 kb on - strand, within Sama_0763 at 946.657 kb on - strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.749 kb on - strand, within Sama_0763 at 946.808 kb on + strand, within Sama_0763 at 946.809 kb on - strand, within Sama_0763 at 946.875 kb on + strand, within Sama_0763 at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.925 kb on - strand at 946.925 kb on - strand at 946.937 kb on + strand at 946.938 kb on - strand at 946.938 kb on - strand at 946.938 kb on - strand at 947.043 kb on + strand, within Sama_0764 at 947.044 kb on - strand, within Sama_0764 at 947.044 kb on - strand, within Sama_0764 at 947.206 kb on + strand, within Sama_0764 at 947.206 kb on + strand, within Sama_0764 at 947.206 kb on + strand, within Sama_0764 at 947.207 kb on - strand, within Sama_0764 at 947.207 kb on - strand, within Sama_0764 at 947.347 kb on + strand, within Sama_0764 at 947.347 kb on + strand, within Sama_0764 at 947.347 kb on + strand, within Sama_0764 at 947.347 kb on + strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.348 kb on - strand, within Sama_0764 at 947.473 kb on + strand at 947.473 kb on + strand at 947.500 kb on - strand at 947.500 kb on - strand at 947.500 kb on - strand at 947.504 kb on + strand at 947.504 kb on + strand at 947.504 kb on + strand at 947.504 kb on + strand at 947.516 kb on + strand at 947.630 kb on + strand at 947.631 kb on - strand at 947.631 kb on - strand at 947.631 kb on - strand at 947.672 kb on - strand, within Sama_0765 at 947.729 kb on + strand, within Sama_0765 at 947.730 kb on - strand, within Sama_0765 at 947.737 kb on + strand, within Sama_0765 at 947.738 kb on - strand, within Sama_0765 at 947.738 kb on - strand, within Sama_0765 at 947.779 kb on + strand, within Sama_0765 at 947.779 kb on + strand, within Sama_0765 at 947.779 kb on + strand, within Sama_0765 at 947.841 kb on + strand, within Sama_0765 at 947.841 kb on + strand, within Sama_0765 at 947.842 kb on - strand, within Sama_0765 at 947.842 kb on - strand, within Sama_0765 at 947.842 kb on - strand, within Sama_0765 at 947.842 kb on - strand, within Sama_0765 at 947.877 kb on + strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.878 kb on - strand, within Sama_0765 at 947.905 kb on - strand, within Sama_0765
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 25 mM remove 945,191 + -0.7 945,192 - +1.7 945,192 - -0.2 945,295 + cobT Sama_0762 0.16 -0.4 945,295 + cobT Sama_0762 0.16 +0.4 945,296 - cobT Sama_0762 0.16 -0.5 945,296 - cobT Sama_0762 0.16 +0.6 945,296 - cobT Sama_0762 0.16 -0.0 945,314 + cobT Sama_0762 0.18 +0.8 945,315 - cobT Sama_0762 0.18 -0.2 945,332 - cobT Sama_0762 0.20 +0.1 945,332 - cobT Sama_0762 0.20 -1.4 945,353 - cobT Sama_0762 0.22 +0.3 945,449 + cobT Sama_0762 0.31 -1.4 945,449 + cobT Sama_0762 0.31 -0.3 945,644 + cobT Sama_0762 0.50 -0.3 945,644 + cobT Sama_0762 0.50 +0.8 945,644 + cobT Sama_0762 0.50 -1.6 945,645 - cobT Sama_0762 0.50 +0.3 945,645 - cobT Sama_0762 0.50 -0.9 945,645 - cobT Sama_0762 0.50 +1.1 945,645 - cobT Sama_0762 0.50 +0.0 945,645 - cobT Sama_0762 0.50 +1.6 945,645 - cobT Sama_0762 0.50 +0.4 945,737 + cobT Sama_0762 0.59 -0.2 945,738 - cobT Sama_0762 0.59 +0.0 945,785 + cobT Sama_0762 0.63 -0.2 945,785 + cobT Sama_0762 0.63 +0.1 945,786 - cobT Sama_0762 0.63 +0.3 945,902 + cobT Sama_0762 0.75 -1.0 945,903 - cobT Sama_0762 0.75 +0.4 945,903 - cobT Sama_0762 0.75 -0.7 945,957 + cobT Sama_0762 0.80 -0.7 945,957 + cobT Sama_0762 0.80 +0.4 945,957 + cobT Sama_0762 0.80 -0.0 945,957 + cobT Sama_0762 0.80 -1.0 945,957 + cobT Sama_0762 0.80 -0.7 945,957 + cobT Sama_0762 0.80 -0.7 945,957 + cobT Sama_0762 0.80 -2.3 945,958 - cobT Sama_0762 0.80 +3.7 945,958 - cobT Sama_0762 0.80 -1.4 945,962 + cobT Sama_0762 0.80 -1.4 945,962 + cobT Sama_0762 0.80 -1.3 945,962 + cobT Sama_0762 0.80 -0.3 945,963 - cobT Sama_0762 0.81 -1.9 945,963 - cobT Sama_0762 0.81 -0.5 945,963 - cobT Sama_0762 0.81 -0.9 945,963 - cobT Sama_0762 0.81 -1.0 945,963 - cobT Sama_0762 0.81 -0.6 946,013 + cobT Sama_0762 0.85 +0.1 946,013 + cobT Sama_0762 0.85 -0.1 946,013 + cobT Sama_0762 0.85 +0.4 946,013 + cobT Sama_0762 0.85 +0.1 946,014 - cobT Sama_0762 0.86 +0.1 946,014 - cobT Sama_0762 0.86 -0.0 946,014 - cobT Sama_0762 0.86 -0.3 946,030 + cobT Sama_0762 0.87 +1.1 946,044 - cobT Sama_0762 0.88 -0.4 946,061 + -0.4 946,062 - +0.1 946,062 - -1.2 946,062 + +0.6 946,110 + +0.1 946,111 - +0.5 946,145 + -0.2 946,153 + +0.4 946,154 - -0.7 946,154 - -0.6 946,176 + -0.2 946,176 + -0.5 946,176 + -0.9 946,176 + -0.2 946,176 + -0.5 946,177 - -2.1 946,177 - -0.6 946,177 - -0.9 946,177 - -1.9 946,177 - -2.0 946,177 - +0.1 946,177 - -0.9 946,177 - -2.1 946,177 - -0.5 946,188 + +1.5 946,230 + -0.2 946,250 + -0.1 946,262 - Sama_0763 0.11 -1.5 946,278 - Sama_0763 0.13 -0.2 946,294 + Sama_0763 0.15 +0.6 946,294 + Sama_0763 0.15 -0.3 946,294 + Sama_0763 0.15 -0.0 946,359 + Sama_0763 0.23 +0.1 946,359 + Sama_0763 0.23 -0.2 946,485 + Sama_0763 0.39 -0.7 946,485 + Sama_0763 0.39 +0.5 946,485 + Sama_0763 0.39 -0.5 946,485 + Sama_0763 0.39 +0.5 946,485 + Sama_0763 0.39 -0.5 946,486 - Sama_0763 0.39 -0.5 946,522 + Sama_0763 0.44 -1.2 946,522 + Sama_0763 0.44 -0.5 946,523 - Sama_0763 0.44 -0.1 946,523 - Sama_0763 0.44 -0.9 946,629 + Sama_0763 0.58 +1.1 946,630 - Sama_0763 0.58 -0.2 946,630 - Sama_0763 0.58 -1.5 946,634 + Sama_0763 0.58 -0.9 946,634 + Sama_0763 0.58 -1.7 946,635 - Sama_0763 0.58 -0.5 946,656 + Sama_0763 0.61 -1.2 946,657 - Sama_0763 0.61 -0.5 946,657 - Sama_0763 0.61 -1.8 946,671 + Sama_0763 0.63 +0.6 946,671 + Sama_0763 0.63 -1.0 946,671 + Sama_0763 0.63 -0.2 946,671 + Sama_0763 0.63 -1.1 946,671 + Sama_0763 0.63 +0.0 946,671 + Sama_0763 0.63 -0.8 946,671 + Sama_0763 0.63 -0.2 946,671 + Sama_0763 0.63 -2.5 946,671 + Sama_0763 0.63 +0.6 946,671 + Sama_0763 0.63 -1.9 946,672 - Sama_0763 0.63 -0.6 946,672 - Sama_0763 0.63 -0.2 946,672 - Sama_0763 0.63 -0.5 946,672 - Sama_0763 0.63 +0.5 946,675 + Sama_0763 0.64 -0.0 946,675 + Sama_0763 0.64 -0.0 946,675 + Sama_0763 0.64 -0.5 946,675 + Sama_0763 0.64 +0.1 946,675 + Sama_0763 0.64 +0.1 946,675 + Sama_0763 0.64 -1.0 946,675 + Sama_0763 0.64 +0.5 946,675 + Sama_0763 0.64 -0.7 946,676 - Sama_0763 0.64 +0.8 946,676 - Sama_0763 0.64 +0.1 946,676 - Sama_0763 0.64 -0.0 946,676 - Sama_0763 0.64 -1.1 946,676 - Sama_0763 0.64 -0.7 946,676 - Sama_0763 0.64 +0.4 946,676 - Sama_0763 0.64 -1.5 946,676 - Sama_0763 0.64 +0.1 946,749 - Sama_0763 0.73 -2.0 946,808 + Sama_0763 0.81 -1.2 946,809 - Sama_0763 0.81 +0.3 946,875 + Sama_0763 0.89 +0.5 946,924 + -1.9 946,924 + -0.3 946,924 + -1.0 946,924 + -0.1 946,924 + -1.2 946,924 + -0.6 946,925 - -1.9 946,925 - -1.7 946,937 + -1.3 946,938 - -0.5 946,938 - -0.1 946,938 - -1.2 947,043 + Sama_0764 0.16 +0.9 947,044 - Sama_0764 0.16 +0.8 947,044 - Sama_0764 0.16 -0.7 947,206 + Sama_0764 0.46 -0.2 947,206 + Sama_0764 0.46 +0.7 947,206 + Sama_0764 0.46 -0.5 947,207 - Sama_0764 0.46 -1.0 947,207 - Sama_0764 0.46 +0.3 947,347 + Sama_0764 0.72 +0.5 947,347 + Sama_0764 0.72 -0.7 947,347 + Sama_0764 0.72 -0.0 947,347 + Sama_0764 0.72 -0.1 947,348 - Sama_0764 0.72 -1.5 947,348 - Sama_0764 0.72 -0.1 947,348 - Sama_0764 0.72 -0.4 947,348 - Sama_0764 0.72 -1.5 947,348 - Sama_0764 0.72 +1.7 947,473 + +0.5 947,473 + -0.0 947,500 - +1.1 947,500 - +0.6 947,500 - -0.7 947,504 + +0.5 947,504 + -1.1 947,504 + +0.5 947,504 + -0.7 947,516 + -2.4 947,630 + -0.3 947,631 - -0.2 947,631 - +0.4 947,631 - -0.1 947,672 - Sama_0765 0.11 -1.0 947,729 + Sama_0765 0.15 +0.5 947,730 - Sama_0765 0.15 -0.9 947,737 + Sama_0765 0.15 -3.0 947,738 - Sama_0765 0.15 -0.3 947,738 - Sama_0765 0.15 -0.9 947,779 + Sama_0765 0.18 +1.1 947,779 + Sama_0765 0.18 +0.1 947,779 + Sama_0765 0.18 -0.8 947,841 + Sama_0765 0.22 -1.0 947,841 + Sama_0765 0.22 +0.4 947,842 - Sama_0765 0.22 -0.0 947,842 - Sama_0765 0.22 +0.1 947,842 - Sama_0765 0.22 -1.0 947,842 - Sama_0765 0.22 +0.1 947,877 + Sama_0765 0.25 -0.8 947,878 - Sama_0765 0.25 +0.6 947,878 - Sama_0765 0.25 -0.5 947,878 - Sama_0765 0.25 -0.2 947,878 - Sama_0765 0.25 -0.5 947,878 - Sama_0765 0.25 -0.2 947,905 - Sama_0765 0.27 -1.2
Or see this region's nucleotide sequence