Strain Fitness in Shewanella amazonensis SB2B around Sama_0143

Experiment: Cholin acetate 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cholin acetate 25 mM
163,621	-		Sama_0142	0.80	+0.7
163,640	+		Sama_0142	0.80	-0.6
163,640	+		Sama_0142	0.80	-1.0
163,744	+		Sama_0142	0.83	-0.8
163,745	-		Sama_0142	0.83	-0.1
163,745	-		Sama_0142	0.83	+1.5
163,793	+		Sama_0142	0.85	+0.8
163,793	+		Sama_0142	0.85	+1.3
163,794	-		Sama_0142	0.85	+0.2
163,794	-		Sama_0142	0.85	+0.0
163,993	+				-0.1
163,994	-				+0.0
163,998	+				+0.3
163,998	+				-0.1
163,998	+				-0.6
163,998	+				-1.0
163,998	+				+2.3
163,998	+				-0.6
163,998	+				-1.4
163,998	+				+0.5
163,998	+				-0.4
163,998	+				+0.3
163,998	+				-0.5
163,998	+				+0.3
163,998	+				+1.3
163,998	+				+0.2
163,998	+				+0.4
163,998	+				+0.2
163,998	+				-0.2
163,998	+				-0.1
163,998	+				-0.3
163,998	+				+0.2
163,998	+				+0.4
163,998	+				-0.5
163,998	+				-1.0
163,999	-				+0.7
163,999	-				+0.0
163,999	-				-0.3
163,999	-				-0.9
163,999	-				-1.3
163,999	-				-0.4
163,999	-				-1.0
163,999	-				-0.5
163,999	-				+0.8
163,999	-				+0.3
163,999	-				+0.6
163,999	-				-0.8
163,999	-				+0.3
163,999	-				-0.9
163,999	-				-1.1
164,031	+				-0.4
164,032	-				+0.3
164,032	-				-2.9
164,032	-				+0.1
164,032	-				-0.1
164,032	-				+0.1
164,051	+				+1.3
164,051	+				+0.4
164,052	-				+0.2
164,052	-				-0.7
164,052	-				+0.9
164,052	-				-1.3
164,062	+				-1.0
164,062	+				-0.2
164,062	+				+1.3
164,062	+				-1.3
164,062	+				-0.6
164,063	-				+0.5
164,063	-				+0.1
164,063	-				+0.0
164,063	-				-2.2
164,063	-				+0.5
164,098	+				+0.7
164,141	+				-1.2
164,201	+				-1.1
164,202	-				+0.1
164,217	-				-1.4
164,217	-				-0.7
164,238	-				+0.2
164,238	-				+0.2
164,238	-				+0.9
164,257	+				-1.1
164,258	-				+0.5
164,258	-				-0.3
164,306	+				-1.2
164,306	+				-0.1
164,306	+				-0.3
164,307	-				-1.3
164,315	-				+0.7
164,315	-				+2.0
164,315	-				-0.7
164,315	-				+0.3
164,334	+				-0.1
164,336	+				+0.6
164,336	+				+1.5
164,336	+				+0.0
164,336	+				+0.6
164,336	+				-0.3
164,336	+				-1.1
164,337	-				-0.7
164,337	-				+1.5
164,337	-				+0.1
164,352	+				-1.5
164,353	-				+0.5
164,353	-				+0.5
164,382	+				+0.5
164,382	+				-0.4
164,382	+				-0.3
164,382	+				-0.1
164,382	+				-0.2
164,382	+				+0.1
164,382	+				-1.0
164,383	-				-0.4
164,383	-				-0.2
164,383	-				-0.3
164,444	+				-1.9
164,444	+				-1.9
164,444	+				-0.6
164,444	+				-0.2
164,444	+				-1.0
164,445	-				+1.3
164,445	-				-0.8
164,453	+				-0.6
164,453	+				-1.4
164,453	+				+0.6
164,454	-				-0.9
164,454	-				+0.8
164,486	-				+0.4
164,486	-				-0.1
164,486	-				-0.2
164,486	-				-0.5
164,486	-				-1.1
164,486	-				+0.7
164,486	-				-1.3
164,505	+				+1.3
164,505	+				-0.1
164,505	+				-0.3
164,505	+				-0.2
164,505	+				-0.3
164,505	+				+0.1
164,505	+				-0.7
164,505	+				+0.6
164,506	-				-1.1
164,506	-				-1.7
164,506	-				-1.9
164,506	-				+0.5
164,506	-				-1.8
164,506	-				-0.1
164,506	-				+3.6
164,506	-				-0.7
164,509	+				+0.5
164,509	+				-1.1
164,509	+				-0.3
164,509	+				+0.8
164,509	+				-0.7
164,509	+				+0.4
164,509	+				+0.1
164,510	-				-1.3
164,510	-				+0.8
164,510	-				-0.2
164,510	-				-0.3
164,510	-				-0.7
164,510	-				+0.1
164,510	-				-0.1
164,510	-				+0.9
164,510	-				-0.7
164,519	+				-1.0
164,519	+				-0.7
164,520	-				+0.3
164,520	-				+0.3
164,520	-				+0.0
164,562	+				-2.4
164,562	+				+1.0
164,562	+				-0.3
164,562	+				-1.5
164,562	+				-0.4
164,562	+				+0.4
164,562	+				-1.0
164,563	-				+0.4
164,563	-				-0.0
164,563	-				-0.7
164,783	+		Sama_0143	0.27	-0.4
164,783	+		Sama_0143	0.27	+0.9
164,783	+		Sama_0143	0.27	-0.0
164,783	+		Sama_0143	0.27	-0.4
164,783	+		Sama_0143	0.27	+0.0
164,784	-		Sama_0143	0.27	+0.2
164,784	-		Sama_0143	0.27	+0.6
164,784	-		Sama_0143	0.27	-0.3
164,798	-		Sama_0143	0.29	+0.7
164,798	-		Sama_0143	0.29	+0.3
164,816	+		Sama_0143	0.32	+0.5
164,816	+		Sama_0143	0.32	-1.3
164,817	-		Sama_0143	0.32	+0.7
164,845	-		Sama_0143	0.36	+0.7
164,971	+		Sama_0143	0.55	-0.1
164,972	-		Sama_0143	0.55	+0.2
164,980	+		Sama_0143	0.56	-0.2
164,981	-		Sama_0143	0.57	-0.5
164,981	-		Sama_0143	0.57	-1.3
164,985	+		Sama_0143	0.57	+0.5
164,985	+		Sama_0143	0.57	+0.3
164,985	+		Sama_0143	0.57	+0.2
164,986	-		Sama_0143	0.57	-0.2
165,082	+		Sama_0143	0.72	+0.3
165,170	+		Sama_0143	0.85	+0.1
165,170	+		Sama_0143	0.85	+0.2
165,170	+		Sama_0143	0.85	-2.3
165,171	-		Sama_0143	0.85	-1.7
165,271	+				-0.2
165,274	+				-1.1
165,274	+				-1.3
165,274	+				-0.3
165,274	+				-0.9
165,274	+				+1.3
165,275	-				-1.1
165,275	-				+1.3
165,275	-				+1.0
165,275	-				-0.9
165,275	-				-0.5
165,275	-				-0.2
165,275	-				-0.8
165,275	-				-0.1
165,291	+				-0.5
165,297	+				+0.6
165,312	+				-0.6
165,312	+				-0.8
165,313	-				-1.5
165,346	+				-0.3
165,347	-				+0.3
165,347	-				-0.7
165,431	+				+0.0
165,432	-				-1.1
165,646	+				-0.3
165,647	-				-0.7
165,647	-				+1.1
165,647	-				-1.5
165,689	-				+0.0
165,744	+				+1.3
165,744	+				-0.7
165,744	+				+0.1
165,745	-				+0.5
165,745	-				-0.0
165,745	-				-1.0
165,745	-				+0.8
165,756	-				-0.3
165,756	-				+1.3
165,773	+				+0.3
165,773	+				-0.9
165,774	-				+0.6
165,774	-				-0.2
165,779	+				-1.0
165,779	+				-0.1
165,779	+				-1.1
165,780	-				+0.5
165,780	-				-0.7
165,782	+				-0.6
165,828	+				-0.4
165,828	+				+0.2
165,828	+				-0.4
165,828	+				+0.3
165,828	+				+0.4
165,828	+				+0.1
165,828	+				-0.1
165,828	+				-0.6
165,829	-				-1.9
165,829	-				+0.7
165,829	-				+0.5
165,834	+				+0.6
165,835	-				-1.1
165,835	-				-1.6
165,859	+				-0.9
165,859	+				+0.3
165,860	-				-0.7
165,865	+				+0.9
165,932	+				-0.7
165,933	-				+1.3
165,933	-				-2.1
165,971	+				-0.0
165,971	+				+0.7
165,971	+				-0.2
165,971	+				-1.9
165,971	+				-0.7
165,971	+				+0.6
165,971	+				-0.6
165,971	+				+0.3
165,972	-				+1.9
165,972	-				-0.1
165,972	-				-0.3
165,972	-				+0.5
165,972	-				+1.3
165,972	-				-0.6
165,972	-				+0.9
165,972	-				+0.7
165,974	+				+0.7
165,974	+				-0.1
165,974	+				-0.6
165,974	+				+0.7
165,975	-				-0.1
165,975	-				-0.2
165,975	-				+0.9
165,975	-				+0.6
165,975	-				-0.5
166,015	-				-0.0
166,015	-				-1.7
166,040	+				+0.5
166,041	-				-0.6
166,075	-		Sama_0144	0.11	+2.3
166,075	-		Sama_0144	0.11	+1.3
166,075	-		Sama_0144	0.11	-1.1
166,075	-		Sama_0144	0.11	-0.2
166,136	+		Sama_0144	0.14	-0.3
166,136	+		Sama_0144	0.14	+0.2
166,136	+		Sama_0144	0.14	-0.4
166,136	+		Sama_0144	0.14	+0.4
166,137	-		Sama_0144	0.14	+0.4
166,137	-		Sama_0144	0.14	-0.3
166,137	-		Sama_0144	0.14	-0.2
166,154	+		Sama_0144	0.15	-0.3
166,154	+		Sama_0144	0.15	-0.5
166,154	+		Sama_0144	0.15	-2.3
166,155	-		Sama_0144	0.15	-0.1
166,155	-		Sama_0144	0.15	+0.8
166,155	-		Sama_0144	0.15	-1.0
166,155	-		Sama_0144	0.15	+0.1
166,155	-		Sama_0144	0.15	+0.6
166,157	+		Sama_0144	0.15	+0.4
166,157	+		Sama_0144	0.15	-0.2
166,157	+		Sama_0144	0.15	-0.5
166,157	+		Sama_0144	0.15	+1.5
166,157	+		Sama_0144	0.15	+0.3
166,157	+		Sama_0144	0.15	-0.2
166,157	+		Sama_0144	0.15	-0.3
166,157	+		Sama_0144	0.15	+1.2
166,157	+		Sama_0144	0.15	+0.7
166,158	-		Sama_0144	0.15	+0.8
166,158	-		Sama_0144	0.15	+0.2
166,158	-		Sama_0144	0.15	-0.3
166,158	-		Sama_0144	0.15	+0.0
166,158	-		Sama_0144	0.15	-1.0
166,158	-		Sama_0144	0.15	-1.3
166,158	-		Sama_0144	0.15	-0.2
166,158	-		Sama_0144	0.15	+0.7
166,160	+		Sama_0144	0.15	+0.1