Strain Fitness in Shewanella amazonensis SB2B around Sama_3617

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
4,257,118	+		Sama_3616	0.54	-2.2
4,257,119	-		Sama_3616	0.55	-3.7
4,257,149	+		Sama_3616	0.56	-2.3
4,257,149	+		Sama_3616	0.56	-1.4
4,257,150	-		Sama_3616	0.56	+0.2
4,257,175	+		Sama_3616	0.58	-3.2
4,257,176	-		Sama_3616	0.58	-2.4
4,257,176	-		Sama_3616	0.58	-3.4
4,257,176	-		Sama_3616	0.58	-1.3
4,257,176	-		Sama_3616	0.58	-2.6
4,257,176	-		Sama_3616	0.58	-1.4
4,257,176	-		Sama_3616	0.58	-0.1
4,257,302	-		Sama_3616	0.65	-3.2
4,257,444	+		Sama_3616	0.73	-2.8
4,257,444	+		Sama_3616	0.73	-1.2
4,257,444	+		Sama_3616	0.73	-0.4
4,257,444	+		Sama_3616	0.73	-1.3
4,257,444	+		Sama_3616	0.73	-2.0
4,257,444	+		Sama_3616	0.73	-2.4
4,257,444	+		Sama_3616	0.73	-3.1
4,257,444	+		Sama_3616	0.73	-2.8
4,257,444	+		Sama_3616	0.73	-3.2
4,257,445	-		Sama_3616	0.73	-1.9
4,257,445	-		Sama_3616	0.73	-3.5
4,257,445	-		Sama_3616	0.73	-1.6
4,257,445	-		Sama_3616	0.73	-0.8
4,257,445	-		Sama_3616	0.73	-1.8
4,257,445	-		Sama_3616	0.73	-1.5
4,257,445	-		Sama_3616	0.73	-1.7
4,257,476	+		Sama_3616	0.75	-3.5
4,257,512	+		Sama_3616	0.77	-3.3
4,257,559	+		Sama_3616	0.80	-4.4
4,257,559	+		Sama_3616	0.80	-2.5
4,257,559	+		Sama_3616	0.80	-3.8
4,257,559	+		Sama_3616	0.80	-2.4
4,257,562	+		Sama_3616	0.80	-3.0
4,257,562	+		Sama_3616	0.80	-1.0
4,257,562	+		Sama_3616	0.80	-3.2
4,257,562	+		Sama_3616	0.80	-2.5
4,257,562	+		Sama_3616	0.80	-2.5
4,257,562	+		Sama_3616	0.80	-0.8
4,257,563	-		Sama_3616	0.80	-1.3
4,257,563	-		Sama_3616	0.80	-2.9
4,257,563	-		Sama_3616	0.80	-2.4
4,257,563	-		Sama_3616	0.80	-1.7
4,257,563	-		Sama_3616	0.80	-1.3
4,257,627	-		Sama_3616	0.84	-2.1
4,257,627	-		Sama_3616	0.84	-1.4
4,257,627	-		Sama_3616	0.84	-4.1
4,257,710	+		Sama_3616	0.88	-2.5
4,257,710	+		Sama_3616	0.88	-2.2
4,257,711	-		Sama_3616	0.88	-2.5
4,257,711	-		Sama_3616	0.88	-1.8
4,257,711	-		Sama_3616	0.88	-1.4
4,257,711	-		Sama_3616	0.88	-2.7
4,257,711	-		Sama_3616	0.88	-0.2
4,257,711	-		Sama_3616	0.88	-2.4
4,257,733	+		Sama_3616	0.90	-1.6
4,257,733	+		Sama_3616	0.90	-1.2
4,257,733	+		Sama_3616	0.90	-0.6
4,257,734	-		Sama_3616	0.90	-3.0
4,257,783	+				-2.9
4,257,784	-				-2.3
4,257,784	-				-2.7
4,257,828	+				-2.7
4,257,828	+				-2.8
4,257,828	+				-1.2
4,257,829	-				-3.8
4,257,829	-				-3.5
4,257,829	-				-2.8
4,257,829	-				-1.8
4,257,878	+				-0.3
4,257,878	+				-3.8
4,257,878	+				+0.2
4,257,878	+				-2.3
4,257,878	+				+0.2
4,257,879	-				-0.1
4,257,879	-				+0.0
4,257,879	-				+0.4
4,257,879	-				-1.4
4,257,879	-				-1.6
4,257,900	+				-2.5
4,257,901	-				-0.2
4,257,932	+				-0.8
4,257,932	+				-2.7
4,257,933	-				+0.6
4,257,933	-				-0.4
4,257,936	+				-3.0
4,257,936	+				-1.5
4,257,936	+				-2.5
4,257,936	+				-0.7
4,257,950	+				+0.2
4,257,959	+				-4.3
4,257,960	-				+1.6
4,257,968	+				-0.8
4,257,969	-				+1.3
4,258,014	+				-1.1
4,258,014	+				-2.3
4,258,218	-		Sama_3617	0.39	-3.3
4,258,229	+		Sama_3617	0.41	-1.8
4,258,229	+		Sama_3617	0.41	-2.5
4,258,229	+		Sama_3617	0.41	-3.4
4,258,229	+		Sama_3617	0.41	-2.4
4,258,230	-		Sama_3617	0.41	-3.9
4,258,230	-		Sama_3617	0.41	-0.8
4,258,230	-		Sama_3617	0.41	-3.6
4,258,248	+		Sama_3617	0.44	-1.5
4,258,249	-		Sama_3617	0.44	-3.9
4,258,249	-		Sama_3617	0.44	-2.4
4,258,256	+		Sama_3617	0.45	-3.4
4,258,256	+		Sama_3617	0.45	-2.0
4,258,256	+		Sama_3617	0.45	-0.6
4,258,256	+		Sama_3617	0.45	-2.3
4,258,257	-		Sama_3617	0.45	-2.2
4,258,257	-		Sama_3617	0.45	-2.0
4,258,257	-		Sama_3617	0.45	-4.0
4,258,257	-		Sama_3617	0.45	-2.6
4,258,323	+		Sama_3617	0.55	-2.2
4,258,323	+		Sama_3617	0.55	-1.3
4,258,323	+		Sama_3617	0.55	-1.0
4,258,323	+		Sama_3617	0.55	-1.8
4,258,324	-		Sama_3617	0.55	-3.2
4,258,324	-		Sama_3617	0.55	-3.1
4,258,324	-		Sama_3617	0.55	-1.2
4,258,324	-		Sama_3617	0.55	-2.6
4,258,420	+		Sama_3617	0.70	-2.5
4,258,420	+		Sama_3617	0.70	-3.1
4,258,421	-		Sama_3617	0.70	-2.2
4,258,434	+		Sama_3617	0.72	-2.7
4,258,497	+		Sama_3617	0.82	-1.7
4,258,497	+		Sama_3617	0.82	-1.5
4,258,498	-		Sama_3617	0.82	-4.2
4,258,512	+		Sama_3617	0.84	-2.4
4,258,512	+		Sama_3617	0.84	-2.2
4,258,513	-		Sama_3617	0.85	-1.6
4,258,602	+				-0.2
4,258,602	+				-3.0
4,258,602	+				-0.6
4,258,602	+				-2.1
4,258,603	-				-3.2
4,258,603	-				-2.7
4,258,603	-				-3.7
4,258,646	+				-1.9
4,258,706	+		Sama_3618	0.21	-0.1
4,258,707	-		Sama_3618	0.21	+0.7
4,258,707	-		Sama_3618	0.21	-0.0
4,258,808	+		Sama_3618	0.43	-1.4
4,258,808	+		Sama_3618	0.43	-0.4
4,258,808	+		Sama_3618	0.43	-1.6
4,258,809	-		Sama_3618	0.43	+1.3
4,258,809	-		Sama_3618	0.43	+1.6
4,258,826	+		Sama_3618	0.47	+0.2
4,258,827	-		Sama_3618	0.47	+0.4
4,258,855	+		Sama_3618	0.53	-2.2
4,258,855	+		Sama_3618	0.53	-3.6
4,258,855	+		Sama_3618	0.53	-0.6
4,258,855	+		Sama_3618	0.53	-4.1
4,258,855	+		Sama_3618	0.53	-1.3
4,258,855	+		Sama_3618	0.53	-2.0
4,258,855	+		Sama_3618	0.53	-2.2
4,258,856	-		Sama_3618	0.53	+0.2
4,258,856	-		Sama_3618	0.53	+0.1
4,258,856	-		Sama_3618	0.53	-0.1
4,258,856	-		Sama_3618	0.53	-0.3
4,258,856	-		Sama_3618	0.53	+0.7
4,258,856	-		Sama_3618	0.53	+1.2
4,258,868	+		Sama_3618	0.56	-1.4
4,258,869	-		Sama_3618	0.56	+1.0
4,258,874	+		Sama_3618	0.57	-2.3
4,258,874	+		Sama_3618	0.57	-5.0
4,258,875	-		Sama_3618	0.58	+0.7
4,258,875	-		Sama_3618	0.58	+0.8
4,258,912	+		Sama_3618	0.66	+0.2
4,258,912	+		Sama_3618	0.66	-1.6
4,258,912	+		Sama_3618	0.66	-1.5
4,258,912	+		Sama_3618	0.66	-2.9
4,258,913	-		Sama_3618	0.66	+0.2
4,258,913	-		Sama_3618	0.66	+1.3
4,258,913	-		Sama_3618	0.66	-1.0
4,258,913	-		Sama_3618	0.66	+1.6
4,259,038	+				-2.8
4,259,038	+				-2.6
4,259,038	+				-0.2
4,259,038	+				-1.5
4,259,038	+				-2.1
4,259,038	+				-1.3
4,259,038	+				-0.4
4,259,038	+				-1.6
4,259,038	+				-2.8
4,259,038	+				-1.9
4,259,038	+				-2.9
4,259,038	+				-2.0
4,259,038	+				-3.4
4,259,038	+				-1.5
4,259,038	+				-2.2
4,259,038	+				-2.4
4,259,038	+				-2.1
4,259,038	+				-2.2
4,259,038	+				-3.3
4,259,038	+				-2.0
4,259,038	+				-4.5
4,259,038	+				-4.7
4,259,038	+				-2.7
4,259,038	+				-2.4
4,259,038	+				-1.4
4,259,038	+				-1.7
4,259,039	-				+0.1
4,259,039	-				+1.4
4,259,039	-				+1.4
4,259,039	-				+1.0
4,259,039	-				-0.2
4,259,039	-				-1.2
4,259,039	-				+2.2
4,259,039	-				+1.1
4,259,039	-				+0.4
4,259,039	-				+1.6
4,259,039	-				-1.3
4,259,039	-				+1.0
4,259,039	-				+1.2
4,259,039	-				+0.4
4,259,039	-				+0.2
4,259,039	-				+0.3
4,259,039	-				+0.1
4,259,039	-				+2.6
4,259,039	-				+0.7
4,259,039	-				-1.0
4,259,039	-				-0.7
4,259,039	-				+0.8
4,259,039	-				+1.2
4,259,039	-				+1.3
4,259,039	-				-0.1
4,259,039	-				+0.2
4,259,039	-				+0.6
4,259,039	-				+0.7
4,259,039	-				+0.2
4,259,190	+				-2.1
4,259,190	+				+0.2
4,259,190	+				-1.2
4,259,191	-				+0.9
4,259,194	+				-1.8
4,259,195	-				-0.2
4,259,234	+				-1.7
4,259,234	+				-0.8
4,259,234	+				-1.0
4,259,234	+				-0.4
4,259,234	+				-0.9
4,259,234	+				-1.2
4,259,234	+				-3.0
4,259,235	-				+0.5
4,259,235	-				-0.2
4,259,235	-				-0.3
4,259,235	-				-0.4
4,259,235	-				-0.4
4,259,235	-				-0.1
4,259,299	+				-0.2
4,259,299	+				-0.8
4,259,299	+				-0.3
4,259,300	-				-0.1
4,259,300	-				+0.2
4,259,300	-				-0.3
4,259,300	-				+1.2
4,259,304	+				-0.4
4,259,304	+				-1.5
4,259,305	-				-1.5
4,259,305	-				-1.3
4,259,305	-				-0.3
4,259,311	+				-0.0
4,259,323	+				-0.7
4,259,323	+				-0.6
4,259,323	+				+0.1
4,259,324	-				-4.2
4,259,324	-				-2.6
4,259,324	-				-2.6
4,259,328	+				-0.4
4,259,329	-				+0.6
4,259,402	+				-1.3
4,259,482	+		Sama_3619	0.16	-2.3
4,259,482	+		Sama_3619	0.16	-3.4
4,259,482	+		Sama_3619	0.16	-1.6
4,259,483	-		Sama_3619	0.16	-3.2
4,259,487	+		Sama_3619	0.16	-1.1
4,259,487	+		Sama_3619	0.16	-0.8
4,259,487	+		Sama_3619	0.16	-0.8
4,259,488	-		Sama_3619	0.17	-4.5
4,259,488	-		Sama_3619	0.17	-2.5
4,259,488	-		Sama_3619	0.17	-2.7
4,259,502	-		Sama_3619	0.18	-2.3
4,259,502	-		Sama_3619	0.18	-2.8
4,259,502	-		Sama_3619	0.18	-2.2
4,259,502	-		Sama_3619	0.18	-3.0
4,259,551	+		Sama_3619	0.24	-3.4