Strain Fitness in Shewanella amazonensis SB2B around Sama_3093

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
3,666,035	-		Sama_3091	0.34	-1.1
3,666,093	+		Sama_3091	0.40	-0.8
3,666,093	+		Sama_3091	0.40	-2.8
3,666,094	-		Sama_3091	0.40	-0.9
3,666,094	-		Sama_3091	0.40	-2.1
3,666,132	+		Sama_3091	0.45	+0.3
3,666,133	-		Sama_3091	0.45	-0.1
3,666,133	-		Sama_3091	0.45	+0.5
3,666,133	-		Sama_3091	0.45	-1.1
3,666,154	-		Sama_3091	0.48	-0.6
3,666,154	-		Sama_3091	0.48	-1.2
3,666,172	+		Sama_3091	0.50	-0.4
3,666,172	+		Sama_3091	0.50	+1.1
3,666,172	+		Sama_3091	0.50	-0.2
3,666,172	+		Sama_3091	0.50	-0.7
3,666,173	-		Sama_3091	0.50	+0.3
3,666,200	+		Sama_3091	0.53	-1.1
3,666,200	+		Sama_3091	0.53	+0.0
3,666,200	+		Sama_3091	0.53	-1.1
3,666,200	+		Sama_3091	0.53	-0.1
3,666,200	+		Sama_3091	0.53	+0.9
3,666,200	+		Sama_3091	0.53	+0.1
3,666,201	-		Sama_3091	0.53	+0.1
3,666,201	-		Sama_3091	0.53	+1.9
3,666,203	+		Sama_3091	0.53	+2.5
3,666,203	+		Sama_3091	0.53	-0.5
3,666,203	+		Sama_3091	0.53	+0.5
3,666,203	+		Sama_3091	0.53	-0.6
3,666,203	+		Sama_3091	0.53	+0.4
3,666,204	-		Sama_3091	0.53	-0.6
3,666,204	-		Sama_3091	0.53	-1.4
3,666,204	-		Sama_3091	0.53	+0.3
3,666,204	-		Sama_3091	0.53	-0.4
3,666,204	-		Sama_3091	0.53	-0.1
3,666,204	-		Sama_3091	0.53	+1.4
3,666,204	-		Sama_3091	0.53	-0.6
3,666,204	-		Sama_3091	0.53	+2.3
3,666,204	-		Sama_3091	0.53	-0.3
3,666,363	+		Sama_3091	0.72	+0.7
3,666,400	+		Sama_3091	0.76	-0.3
3,666,400	+		Sama_3091	0.76	-0.6
3,666,400	+		Sama_3091	0.76	+0.7
3,666,400	+		Sama_3091	0.76	-1.1
3,666,400	+		Sama_3091	0.76	-0.1
3,666,400	+		Sama_3091	0.76	+0.9
3,666,400	+		Sama_3091	0.76	+0.1
3,666,401	-		Sama_3091	0.77	-2.1
3,666,401	-		Sama_3091	0.77	+0.1
3,666,401	-		Sama_3091	0.77	-0.9
3,666,401	-		Sama_3091	0.77	+0.6
3,666,401	-		Sama_3091	0.77	-0.8
3,666,453	+		Sama_3091	0.83	+0.9
3,666,453	+		Sama_3091	0.83	-0.4
3,666,453	+		Sama_3091	0.83	+0.1
3,666,454	-		Sama_3091	0.83	-1.6
3,666,454	-		Sama_3091	0.83	-2.4
3,666,466	+		Sama_3091	0.84	+0.4
3,666,466	+		Sama_3091	0.84	+0.1
3,666,466	+		Sama_3091	0.84	+0.1
3,666,466	+		Sama_3091	0.84	+0.9
3,666,467	-		Sama_3091	0.84	+0.8
3,666,467	-		Sama_3091	0.84	-0.2
3,666,467	-		Sama_3091	0.84	-1.1
3,666,514	+		Sama_3091	0.90	-0.6
3,666,514	+		Sama_3091	0.90	-0.9
3,666,515	-				-0.1
3,666,515	-				-0.8
3,666,515	-				-0.5
3,666,515	-				-0.9
3,666,615	+		Sama_3092	0.10	-0.6
3,666,615	+		Sama_3092	0.10	+0.2
3,666,616	-		Sama_3092	0.11	+1.0
3,666,622	+		Sama_3092	0.13	-0.5
3,666,623	-		Sama_3092	0.13	+0.4
3,666,778	+		Sama_3092	0.69	+0.5
3,666,778	+		Sama_3092	0.69	-0.8
3,666,778	+		Sama_3092	0.69	-0.1
3,666,778	+		Sama_3092	0.69	-0.3
3,666,778	+		Sama_3092	0.69	-1.1
3,666,779	-		Sama_3092	0.70	-0.1
3,666,779	-		Sama_3092	0.70	+0.5
3,666,781	+		Sama_3092	0.70	-0.3
3,666,826	+		Sama_3092	0.87	-1.4
3,666,827	-		Sama_3092	0.87	-0.6
3,666,827	-		Sama_3092	0.87	+0.5
3,666,827	-		Sama_3092	0.87	-1.4
3,666,827	-		Sama_3092	0.87	+0.6
3,666,827	-		Sama_3092	0.87	-0.1
3,666,832	+		Sama_3092	0.89	-0.6
3,666,832	+		Sama_3092	0.89	-0.7
3,666,833	-		Sama_3092	0.89	+0.2
3,666,833	-		Sama_3092	0.89	+1.1
3,666,833	-		Sama_3092	0.89	-0.5
3,666,897	+				-2.5
3,666,900	+				-1.1
3,666,900	+				-2.1
3,666,900	+				+0.0
3,666,900	+				+0.2
3,666,900	+				-1.4
3,666,900	+				-2.5
3,666,900	+				-2.0
3,666,900	+				-1.1
3,666,901	-				-1.6
3,666,901	-				-2.1
3,666,901	-				-2.3
3,666,901	-				-3.9
3,666,901	-				-3.5
3,666,901	-				-3.1
3,666,902	+				-1.4
3,666,902	+				-1.9
3,666,902	+				+0.4
3,666,903	-				-2.1
3,666,903	-				-0.9
3,666,903	-				-0.9
3,667,008	-				-1.8
3,667,008	-				-2.5
3,667,008	-				-3.6
3,667,099	+		Sama_3093	0.12	-1.9
3,667,099	+		Sama_3093	0.12	+0.4
3,667,099	+		Sama_3093	0.12	-0.3
3,667,099	+		Sama_3093	0.12	-2.5
3,667,099	+		Sama_3093	0.12	-0.9
3,667,100	-		Sama_3093	0.12	-3.8
3,667,100	-		Sama_3093	0.12	-2.5
3,667,100	-		Sama_3093	0.12	-2.1
3,667,100	-		Sama_3093	0.12	-1.9
3,667,112	+		Sama_3093	0.13	-2.2
3,667,112	+		Sama_3093	0.13	-1.9
3,667,112	+		Sama_3093	0.13	-2.1
3,667,112	+		Sama_3093	0.13	-1.5
3,667,113	-		Sama_3093	0.13	-3.4
3,667,242	+		Sama_3093	0.23	-2.2
3,667,242	+		Sama_3093	0.23	-3.6
3,667,242	+		Sama_3093	0.23	-1.0
3,667,243	-		Sama_3093	0.23	-2.2
3,667,243	-		Sama_3093	0.23	-2.4
3,667,243	-		Sama_3093	0.23	-0.1
3,667,243	-		Sama_3093	0.23	-2.4
3,667,243	-		Sama_3093	0.23	-0.4
3,667,246	+		Sama_3093	0.23	-0.7
3,667,246	+		Sama_3093	0.23	-0.4
3,667,246	+		Sama_3093	0.23	-0.1
3,667,246	+		Sama_3093	0.23	-3.2
3,667,246	+		Sama_3093	0.23	-2.4
3,667,247	-		Sama_3093	0.23	-1.1
3,667,247	-		Sama_3093	0.23	-0.1
3,667,247	-		Sama_3093	0.23	-1.9
3,667,247	-		Sama_3093	0.23	-1.6
3,667,247	-		Sama_3093	0.23	-0.6
3,667,272	+		Sama_3093	0.25	-2.6
3,667,273	-		Sama_3093	0.25	-0.4
3,667,368	-		Sama_3093	0.32	-2.0
3,667,368	-		Sama_3093	0.32	-2.3
3,667,384	+		Sama_3093	0.33	-2.7
3,667,384	+		Sama_3093	0.33	-2.3
3,667,384	+		Sama_3093	0.33	-0.6
3,667,385	-		Sama_3093	0.33	-2.3
3,667,385	-		Sama_3093	0.33	-3.7
3,667,412	-		Sama_3093	0.35	-1.9
3,667,412	-		Sama_3093	0.35	-2.4
3,667,419	+		Sama_3093	0.36	-1.8
3,667,457	+		Sama_3093	0.38	-1.1
3,667,458	-		Sama_3093	0.38	-2.0
3,667,458	-		Sama_3093	0.38	-2.4
3,667,464	+		Sama_3093	0.39	-0.4
3,667,464	+		Sama_3093	0.39	-2.9
3,667,464	+		Sama_3093	0.39	-1.8
3,667,464	+		Sama_3093	0.39	-3.4
3,667,464	+		Sama_3093	0.39	-2.2
3,667,465	-		Sama_3093	0.39	-2.1
3,667,465	-		Sama_3093	0.39	-1.4
3,667,465	-		Sama_3093	0.39	-1.1
3,667,465	-		Sama_3093	0.39	-0.4
3,667,465	-		Sama_3093	0.39	-3.1
3,667,465	-		Sama_3093	0.39	-2.2
3,667,465	-		Sama_3093	0.39	-1.9
3,667,465	-		Sama_3093	0.39	-0.4
3,667,465	-		Sama_3093	0.39	-3.2
3,667,465	-		Sama_3093	0.39	-3.2
3,667,471	+		Sama_3093	0.39	-1.9
3,667,472	-		Sama_3093	0.39	-3.6
3,667,553	+		Sama_3093	0.45	-2.6
3,667,648	+		Sama_3093	0.52	-1.2
3,667,648	+		Sama_3093	0.52	-1.8
3,667,817	+		Sama_3093	0.65	-1.1
3,667,817	+		Sama_3093	0.65	-0.6
3,667,909	+		Sama_3093	0.72	+0.7
3,667,909	+		Sama_3093	0.72	-3.2
3,667,909	+		Sama_3093	0.72	-2.5
3,667,909	+		Sama_3093	0.72	-0.1
3,667,910	-		Sama_3093	0.72	-1.4
3,667,984	+		Sama_3093	0.77	+0.4
3,667,984	+		Sama_3093	0.77	-1.2
3,667,984	+		Sama_3093	0.77	-0.6
3,667,985	-		Sama_3093	0.77	-3.2
3,667,985	-		Sama_3093	0.77	-2.6
3,667,985	-		Sama_3093	0.77	-2.8
3,667,985	-		Sama_3093	0.77	-2.2
3,667,994	+		Sama_3093	0.78	-1.4
3,667,994	+		Sama_3093	0.78	-1.9
3,667,994	+		Sama_3093	0.78	-1.9
3,667,994	+		Sama_3093	0.78	-2.5
3,667,995	-		Sama_3093	0.78	-1.3
3,667,995	-		Sama_3093	0.78	-2.5
3,667,995	-		Sama_3093	0.78	-2.4
3,667,995	-		Sama_3093	0.78	-2.3
3,667,995	-		Sama_3093	0.78	-0.8
3,668,009	+		Sama_3093	0.79	-3.3
3,668,075	+		Sama_3093	0.84	-1.7
3,668,116	+		Sama_3093	0.87	-1.9
3,668,116	+		Sama_3093	0.87	-3.1
3,668,116	+		Sama_3093	0.87	+1.5
3,668,117	-		Sama_3093	0.87	-3.6
3,668,117	-		Sama_3093	0.87	-2.4
3,668,117	-		Sama_3093	0.87	-2.9
3,668,117	-		Sama_3093	0.87	-2.6
3,668,138	+		Sama_3093	0.88	-0.6
3,668,138	+		Sama_3093	0.88	-2.0
3,668,138	+		Sama_3093	0.88	-1.0
3,668,183	+				-2.1
3,668,220	-				-2.5
3,668,387	+		Sama_3094	0.25	-0.1
3,668,387	+		Sama_3094	0.25	+0.4
3,668,388	-		Sama_3094	0.25	-0.5
3,668,388	-		Sama_3094	0.25	+0.4
3,668,444	+		Sama_3094	0.39	-1.4
3,668,444	+		Sama_3094	0.39	-0.3
3,668,498	-		Sama_3094	0.52	+0.3
3,668,498	-		Sama_3094	0.52	+1.4
3,668,644	+		Sama_3094	0.88	-0.0
3,668,645	-		Sama_3094	0.88	-0.9
3,668,664	+				-0.2
3,668,664	+				+0.8
3,668,664	+				-0.4
3,668,664	+				-0.4
3,668,664	+				+0.3
3,668,664	+				-0.8
3,668,664	+				+0.7
3,668,665	-				-1.0
3,668,665	-				-1.9
3,668,665	-				+1.1
3,668,665	-				+0.8
3,668,816	+				-0.7
3,668,885	-		Sama_3095	0.10	-0.0
3,668,885	-		Sama_3095	0.10	-1.4
3,668,885	-		Sama_3095	0.10	-1.0
3,668,885	-		Sama_3095	0.10	+0.2
3,668,885	-		Sama_3095	0.10	+0.0
3,668,885	-		Sama_3095	0.10	+0.3
3,668,901	-		Sama_3095	0.12	+0.2
3,668,955	-		Sama_3095	0.18	-0.5
3,668,987	+		Sama_3095	0.22	-0.5
3,668,988	-		Sama_3095	0.22	-0.6
3,668,988	-		Sama_3095	0.22	-0.5
3,668,988	-		Sama_3095	0.22	-0.8
3,669,000	+		Sama_3095	0.24	-0.4
3,669,033	-		Sama_3095	0.27	-0.9
3,669,033	-		Sama_3095	0.27	-0.4
3,669,159	-		Sama_3095	0.42	+1.7
3,669,282	+		Sama_3095	0.56	-0.3