Strain Fitness in Shewanella amazonensis SB2B around Sama_2988

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
3,558,094	-				+0.6
3,558,121	+				+0.6
3,558,122	-				+0.4
3,558,122	-				-0.6
3,558,122	-				-0.8
3,558,139	-		Sama_2987	0.11	-0.4
3,558,248	+		Sama_2987	0.23	-0.7
3,558,248	+		Sama_2987	0.23	-0.5
3,558,248	+		Sama_2987	0.23	-0.6
3,558,248	+		Sama_2987	0.23	-0.3
3,558,249	-		Sama_2987	0.23	+0.1
3,558,291	+		Sama_2987	0.28	+1.2
3,558,292	-		Sama_2987	0.28	+0.1
3,558,292	-		Sama_2987	0.28	-1.0
3,558,292	-		Sama_2987	0.28	-1.1
3,558,326	+		Sama_2987	0.32	-0.5
3,558,327	-		Sama_2987	0.32	-0.7
3,558,552	+		Sama_2987	0.57	-0.7
3,558,552	+		Sama_2987	0.57	+0.3
3,558,553	-		Sama_2987	0.57	+0.1
3,558,553	-		Sama_2987	0.57	-0.9
3,558,570	-		Sama_2987	0.59	+0.1
3,558,611	+		Sama_2987	0.63	+0.9
3,558,611	+		Sama_2987	0.63	+0.0
3,558,611	+		Sama_2987	0.63	-0.4
3,558,739	-		Sama_2987	0.78	-0.6
3,558,739	-		Sama_2987	0.78	-0.4
3,558,809	+		Sama_2987	0.85	-0.3
3,558,809	+		Sama_2987	0.85	+0.1
3,558,809	+		Sama_2987	0.85	+0.5
3,558,810	-		Sama_2987	0.85	-1.3
3,558,810	-		Sama_2987	0.85	-0.6
3,558,842	+		Sama_2987	0.89	-0.4
3,558,843	-		Sama_2987	0.89	+0.5
3,558,859	+				-0.3
3,558,859	+				+0.6
3,558,859	+				-2.6
3,558,860	-				-1.7
3,558,860	-				-0.4
3,558,920	+				+0.6
3,558,930	+				+0.0
3,558,930	+				+0.6
3,558,930	+				-0.3
3,558,931	-				+0.4
3,558,969	-				+0.3
3,558,987	+				+1.7
3,558,988	-				+0.9
3,558,988	-				-0.5
3,558,988	-				+1.9
3,558,988	-				+0.4
3,558,988	-				+0.2
3,558,994	+				-0.1
3,559,001	-				+0.5
3,559,018	-				-0.7
3,559,022	-				+0.4
3,559,026	+				+0.8
3,559,115	-				-0.4
3,559,115	-				+2.9
3,559,265	+		Sama_2988	0.29	-0.5
3,559,265	+		Sama_2988	0.29	-0.7
3,559,266	-		Sama_2988	0.29	-0.3
3,559,329	+		Sama_2988	0.39	+0.1
3,559,330	-		Sama_2988	0.39	-2.1
3,559,458	+		Sama_2988	0.60	-0.2
3,559,458	+		Sama_2988	0.60	-0.4
3,559,458	+		Sama_2988	0.60	-2.2
3,559,459	-		Sama_2988	0.60	+0.0
3,559,459	-		Sama_2988	0.60	-0.5
3,559,565	+		Sama_2988	0.77	-0.9
3,559,565	+		Sama_2988	0.77	-0.3
3,559,565	+		Sama_2988	0.77	-0.5
3,559,565	+		Sama_2988	0.77	-0.0
3,559,566	-		Sama_2988	0.77	+0.7
3,559,570	+		Sama_2988	0.78	+0.1
3,559,570	+		Sama_2988	0.78	-1.0
3,559,571	-		Sama_2988	0.78	+0.9
3,559,598	+		Sama_2988	0.82	-0.3
3,559,598	+		Sama_2988	0.82	+0.3
3,559,599	-		Sama_2988	0.82	-0.3
3,559,599	-		Sama_2988	0.82	-0.8
3,559,599	-		Sama_2988	0.82	-1.3
3,559,627	-		Sama_2988	0.87	-0.3
3,559,641	-		Sama_2988	0.89	-0.9
3,559,656	+				-1.8
3,559,656	+				-0.9
3,559,656	+				-1.4
3,559,656	+				+1.3
3,559,657	-				-1.1
3,559,657	-				-0.1
3,559,657	-				-3.3
3,559,657	-				-1.5
3,559,678	+				-0.0
3,559,678	+				+0.1
3,559,678	+				-0.2
3,559,679	-				-1.0
3,559,679	-				-0.7
3,559,679	-				-1.8
3,559,687	-				-2.1
3,559,719	+				+0.8
3,559,719	+				-0.1
3,559,720	-				-0.3
3,559,735	-				-0.9
3,559,735	-				-0.3
3,559,735	-				+0.7
3,559,735	-				-0.3
3,559,735	-				-0.1
3,559,756	+				-0.9
3,559,756	+				+0.3
3,559,756	+				+0.8
3,559,756	+				-0.1
3,559,757	-				-0.4
3,559,764	+				-0.1
3,559,843	+				+0.1
3,559,843	+				-0.5
3,559,843	+				-0.3
3,559,843	+				+2.7
3,559,844	-				+0.2
3,559,844	-				+0.9
3,559,844	-				+0.5
3,559,847	-				-0.4
3,559,876	+				+0.5
3,559,942	-				-0.4
3,559,942	-				-2.1
3,559,951	+				-0.3
3,559,952	-				-0.1
3,559,965	+				-0.8
3,559,970	-				+0.9
3,559,990	+				+0.1
3,559,990	+				+0.2
3,559,990	+				-0.2
3,559,991	-				-0.2
3,560,019	+				+1.3
3,560,020	-				+1.7
3,560,020	-				-1.7
3,560,025	+				+0.4
3,560,025	+				+0.4
3,560,026	-				+1.6
3,560,142	-				-0.2
3,560,142	-				+1.9
3,560,269	+		Sama_2989	0.16	-0.1
3,560,270	-		Sama_2989	0.16	+0.4
3,560,270	-		Sama_2989	0.16	+1.5
3,560,270	-		Sama_2989	0.16	+0.9
3,560,292	+		Sama_2989	0.18	+1.5
3,560,315	+		Sama_2989	0.19	+0.0
3,560,315	+		Sama_2989	0.19	+0.9
3,560,315	+		Sama_2989	0.19	-0.7
3,560,316	-		Sama_2989	0.19	-1.1
3,560,385	+		Sama_2989	0.23	-0.1
3,560,385	+		Sama_2989	0.23	-0.6
3,560,386	-		Sama_2989	0.23	+0.3
3,560,386	-		Sama_2989	0.23	-0.4
3,560,386	-		Sama_2989	0.23	+0.8
3,560,386	-		Sama_2989	0.23	-0.5
3,560,386	-		Sama_2989	0.23	-0.0
3,560,430	+		Sama_2989	0.26	+0.9
3,560,431	-		Sama_2989	0.26	-0.6
3,560,431	-		Sama_2989	0.26	+1.7
3,560,432	+		Sama_2989	0.26	+0.9
3,560,432	+		Sama_2989	0.26	+0.3
3,560,432	+		Sama_2989	0.26	-0.5
3,560,432	+		Sama_2989	0.26	-0.8
3,560,432	+		Sama_2989	0.26	+0.3
3,560,432	+		Sama_2989	0.26	+0.1
3,560,432	+		Sama_2989	0.26	-0.2
3,560,432	+		Sama_2989	0.26	+0.1
3,560,432	+		Sama_2989	0.26	+0.5
3,560,432	+		Sama_2989	0.26	-0.6
3,560,433	-		Sama_2989	0.26	-0.4
3,560,433	-		Sama_2989	0.26	+0.1
3,560,433	-		Sama_2989	0.26	+0.9
3,560,433	-		Sama_2989	0.26	-0.6
3,560,471	+		Sama_2989	0.28	+0.9
3,560,471	+		Sama_2989	0.28	+0.9
3,560,472	-		Sama_2989	0.28	-0.6
3,560,472	-		Sama_2989	0.28	-1.6
3,560,472	-		Sama_2989	0.28	+0.9
3,560,472	-		Sama_2989	0.28	-0.7
3,560,504	+		Sama_2989	0.30	-0.7
3,560,504	+		Sama_2989	0.30	-0.5
3,560,505	-		Sama_2989	0.30	-0.1
3,560,505	-		Sama_2989	0.30	+0.4
3,560,505	-		Sama_2989	0.30	+1.1
3,560,519	+		Sama_2989	0.31	-0.1
3,560,519	+		Sama_2989	0.31	+0.6
3,560,520	-		Sama_2989	0.31	+0.6
3,560,560	+		Sama_2989	0.33	-0.7
3,560,564	+		Sama_2989	0.33	-0.1
3,560,564	+		Sama_2989	0.33	+0.1
3,560,564	+		Sama_2989	0.33	-0.1
3,560,564	+		Sama_2989	0.33	+0.9
3,560,564	+		Sama_2989	0.33	+0.6
3,560,564	+		Sama_2989	0.33	-1.7
3,560,565	-		Sama_2989	0.33	+0.3
3,560,565	-		Sama_2989	0.33	-0.2
3,560,565	-		Sama_2989	0.33	+0.2
3,560,607	-		Sama_2989	0.36	+0.2
3,560,619	+		Sama_2989	0.37	+0.2
3,560,620	-		Sama_2989	0.37	+0.1
3,560,620	-		Sama_2989	0.37	-0.5
3,560,621	+		Sama_2989	0.37	-0.3
3,560,622	-		Sama_2989	0.37	+0.9
3,560,654	+		Sama_2989	0.39	-0.7
3,560,654	+		Sama_2989	0.39	-0.5
3,560,654	+		Sama_2989	0.39	-0.7
3,560,655	-		Sama_2989	0.39	+0.7
3,560,655	-		Sama_2989	0.39	-0.1
3,560,663	+		Sama_2989	0.39	-0.5
3,560,663	+		Sama_2989	0.39	+1.1
3,560,664	-		Sama_2989	0.39	-0.4