Strain Fitness in Shewanella amazonensis SB2B around Sama_2617

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
3,132,410	+		Sama_2615	0.79	+3.1
3,132,483	+		Sama_2615	0.82	+2.2
3,132,483	+		Sama_2615	0.82	-0.2
3,132,483	+		Sama_2615	0.82	-0.4
3,132,484	-		Sama_2615	0.82	-1.3
3,132,484	-		Sama_2615	0.82	+1.7
3,132,486	-		Sama_2615	0.82	+1.2
3,132,486	-		Sama_2615	0.82	-0.9
3,132,517	+		Sama_2615	0.84	+1.6
3,132,517	+		Sama_2615	0.84	+0.3
3,132,518	-		Sama_2615	0.84	-0.3
3,132,518	-		Sama_2615	0.84	-1.0
3,132,565	+		Sama_2615	0.86	+0.2
3,132,565	+		Sama_2615	0.86	+0.7
3,132,565	+		Sama_2615	0.86	-0.1
3,132,566	-		Sama_2615	0.86	-0.0
3,132,576	+		Sama_2615	0.87	+1.9
3,132,576	+		Sama_2615	0.87	+2.7
3,132,576	+		Sama_2615	0.87	-0.3
3,132,576	+		Sama_2615	0.87	-0.3
3,132,576	+		Sama_2615	0.87	+0.1
3,132,577	-		Sama_2615	0.87	+0.6
3,132,577	-		Sama_2615	0.87	+0.6
3,132,577	-		Sama_2615	0.87	+0.7
3,132,577	-		Sama_2615	0.87	-0.3
3,132,577	-		Sama_2615	0.87	+0.4
3,132,577	-		Sama_2615	0.87	-1.6
3,132,577	-		Sama_2615	0.87	+0.6
3,132,577	-		Sama_2615	0.87	-1.9
3,132,577	-		Sama_2615	0.87	+0.7
3,132,577	-		Sama_2615	0.87	-0.1
3,132,585	+		Sama_2615	0.87	+0.4
3,132,585	+		Sama_2615	0.87	-1.9
3,132,586	-		Sama_2615	0.87	-2.1
3,132,586	-		Sama_2615	0.87	+0.7
3,132,586	-		Sama_2615	0.87	-0.3
3,132,586	-		Sama_2615	0.87	-0.4
3,132,586	-		Sama_2615	0.87	-0.9
3,132,605	+		Sama_2615	0.88	-0.7
3,132,780	+				+1.7
3,132,780	+				+1.7
3,132,789	+				-1.2
3,132,789	+				-1.5
3,132,789	+				+1.1
3,132,790	-				-0.2
3,132,790	-				+0.4
3,132,790	-				-0.3
3,132,790	-				-1.0
3,132,816	+				+0.1
3,132,816	+				+0.3
3,132,816	+				-0.7
3,132,817	-				-0.7
3,132,817	-				-0.5
3,132,817	-				+0.1
3,132,849	+				-0.9
3,132,850	-				-0.9
3,132,888	-				+1.2
3,132,906	+				+0.6
3,132,907	-				+1.7
3,132,933	+				+0.7
3,132,934	-				-0.9
3,132,944	+				-0.3
3,132,944	+				-0.5
3,132,944	+				+0.4
3,132,944	+				+0.3
3,132,945	-				-0.8
3,132,945	-				-0.7
3,132,946	+				-0.4
3,132,946	+				+1.1
3,132,974	+				+0.3
3,132,974	+				-0.0
3,132,974	+				-0.5
3,132,975	-				-0.9
3,132,975	-				-0.6
3,133,000	+				+0.4
3,133,000	+				-2.0
3,133,000	+				-1.0
3,133,001	-				-0.1
3,133,001	-				+0.6
3,133,119	-		Sama_2616	0.35	-0.7
3,133,176	-		Sama_2616	0.49	+0.1
3,133,176	-		Sama_2616	0.49	-0.5
3,133,176	-		Sama_2616	0.49	-0.9
3,133,181	+		Sama_2616	0.50	-0.5
3,133,181	+		Sama_2616	0.50	-0.3
3,133,181	+		Sama_2616	0.50	+0.1
3,133,181	+		Sama_2616	0.50	-0.9
3,133,181	+		Sama_2616	0.50	-0.9
3,133,181	+		Sama_2616	0.50	+2.1
3,133,181	+		Sama_2616	0.50	-0.5
3,133,181	+		Sama_2616	0.50	-0.9
3,133,181	+		Sama_2616	0.50	+0.8
3,133,181	+		Sama_2616	0.50	-0.9
3,133,181	+		Sama_2616	0.50	+0.4
3,133,181	+		Sama_2616	0.50	-0.2
3,133,181	+		Sama_2616	0.50	+0.1
3,133,181	+		Sama_2616	0.50	+0.7
3,133,181	+		Sama_2616	0.50	+2.0
3,133,181	+		Sama_2616	0.50	-0.4
3,133,181	+		Sama_2616	0.50	+0.3
3,133,181	+		Sama_2616	0.50	+1.1
3,133,181	+		Sama_2616	0.50	+1.3
3,133,181	+		Sama_2616	0.50	+0.5
3,133,181	+		Sama_2616	0.50	-0.4
3,133,181	+		Sama_2616	0.50	-0.6
3,133,181	+		Sama_2616	0.50	-1.1
3,133,181	+		Sama_2616	0.50	-2.3
3,133,182	-		Sama_2616	0.51	-0.8
3,133,182	-		Sama_2616	0.51	+0.1
3,133,182	-		Sama_2616	0.51	-1.3
3,133,182	-		Sama_2616	0.51	-0.6
3,133,182	-		Sama_2616	0.51	+0.7
3,133,182	-		Sama_2616	0.51	-0.6
3,133,182	-		Sama_2616	0.51	+0.3
3,133,182	-		Sama_2616	0.51	-0.6
3,133,182	-		Sama_2616	0.51	-1.1
3,133,182	-		Sama_2616	0.51	+0.0
3,133,185	+		Sama_2616	0.51	+0.2
3,133,185	+		Sama_2616	0.51	+1.3
3,133,185	+		Sama_2616	0.51	+1.0
3,133,185	+		Sama_2616	0.51	-1.1
3,133,185	+		Sama_2616	0.51	-0.3
3,133,185	+		Sama_2616	0.51	+0.1
3,133,185	+		Sama_2616	0.51	-0.2
3,133,185	+		Sama_2616	0.51	-0.3
3,133,185	+		Sama_2616	0.51	-0.7
3,133,185	+		Sama_2616	0.51	-0.4
3,133,186	-		Sama_2616	0.52	+0.1
3,133,186	-		Sama_2616	0.52	-1.6
3,133,186	-		Sama_2616	0.52	+0.1
3,133,186	-		Sama_2616	0.52	+0.7
3,133,186	-		Sama_2616	0.52	+0.0
3,133,186	-		Sama_2616	0.52	+0.1
3,133,186	-		Sama_2616	0.52	-0.6
3,133,186	-		Sama_2616	0.52	+0.1
3,133,186	-		Sama_2616	0.52	-0.3
3,133,207	-		Sama_2616	0.57	+0.1
3,133,207	-		Sama_2616	0.57	+0.1
3,133,207	-		Sama_2616	0.57	+0.2
3,133,207	-		Sama_2616	0.57	-2.3
3,133,207	-		Sama_2616	0.57	-0.9
3,133,270	-		Sama_2616	0.73	-0.1
3,133,294	+		Sama_2616	0.79	-0.3
3,133,294	+		Sama_2616	0.79	-0.7
3,133,295	-		Sama_2616	0.79	-1.3
3,133,299	+		Sama_2616	0.80	+0.5
3,133,299	+		Sama_2616	0.80	+0.4
3,133,377	+				-1.3
3,133,377	+				-0.1
3,133,377	+				+0.4
3,133,378	-				-0.6
3,133,381	+				-0.0
3,133,433	+				+0.7
3,133,434	-				+0.4
3,133,597	+		Sama_2617	0.40	-0.3
3,133,598	-		Sama_2617	0.40	+1.7
3,133,609	+		Sama_2617	0.43	+0.4
3,133,647	+		Sama_2617	0.50	+0.6
3,133,648	-		Sama_2617	0.50	-0.3
3,133,662	-		Sama_2617	0.53	+0.4
3,133,688	+		Sama_2617	0.58	-0.5
3,133,688	+		Sama_2617	0.58	-0.9
3,133,688	+		Sama_2617	0.58	-0.5
3,133,689	-		Sama_2617	0.59	-0.4
3,133,773	+		Sama_2617	0.75	+0.2
3,133,797	+		Sama_2617	0.80	-1.2
3,133,817	+		Sama_2617	0.84	-0.0
3,133,817	+		Sama_2617	0.84	+0.5
3,133,818	-		Sama_2617	0.84	+0.5
3,133,818	-		Sama_2617	0.84	+0.3
3,133,818	-		Sama_2617	0.84	+0.2
3,133,895	+				+0.5
3,133,944	+				-1.4
3,133,944	+				+0.8
3,133,944	+				+1.1
3,133,945	-				+0.5
3,133,955	+				+0.3
3,133,956	-				+0.4
3,133,956	-				-1.0
3,134,017	-				+0.3
3,134,017	-				+0.4
3,134,030	-				-0.4
3,134,043	+				-0.9
3,134,043	+				-0.5
3,134,044	-				-1.7
3,134,044	-				+1.4
3,134,044	-				+0.5
3,134,044	-				+0.5
3,134,049	+				-1.2
3,134,066	-				-0.4
3,134,082	+				+0.4
3,134,083	-				+1.1
3,134,083	-				-0.9
3,134,088	+				+0.7
3,134,088	+				+0.5
3,134,089	-				-0.7
3,134,089	-				+0.7
3,134,089	-				-1.6
3,134,089	-				+0.7
3,134,089	-				-0.3
3,134,143	+				+0.4
3,134,144	-				-0.3
3,134,144	-				+1.7
3,134,149	+				-2.1
3,134,149	+				+0.4
3,134,150	-				-0.0
3,134,155	+				-0.7
3,134,155	+				+1.0
3,134,184	+				-1.3
3,134,184	+				+0.7
3,134,197	+				+0.2
3,134,198	-				+0.1
3,134,198	-				+0.3
3,134,198	-				+0.3
3,134,198	-				-0.7
3,134,220	-				+0.7
3,134,220	-				+1.7
3,134,220	-				+1.1
3,134,220	-				+0.7
3,134,237	-				+0.4
3,134,237	-				+1.0
3,134,237	-				-0.1
3,134,238	+				-0.5
3,134,238	+				-2.3
3,134,239	-				-0.9
3,134,239	-				+0.7
3,134,239	-				+1.2
3,134,239	-				+0.1
3,134,255	+				+0.2
3,134,255	+				-0.1
3,134,256	-				-1.3
3,134,256	-				-0.1
3,134,256	-				+0.3
3,134,256	-				+0.1
3,134,256	-				-0.4
3,134,256	-				-0.5
3,134,256	-				-0.7
3,134,259	+				-0.9
3,134,259	+				-0.5
3,134,259	+				-1.6
3,134,259	+				+0.1
3,134,260	-				-0.5
3,134,260	-				+0.1
3,134,260	-				-0.7
3,134,260	-				-0.3
3,134,260	-				+0.4
3,134,260	-				+1.3
3,134,260	-				-0.4
3,134,260	-				+0.9
3,134,263	+				-0.1
3,134,263	+				+1.2
3,134,263	+				-0.6
3,134,264	-				+0.4
3,134,264	-				-0.2
3,134,264	-				+0.9
3,134,264	-				-0.6
3,134,264	-				+0.6
3,134,302	+		Sama_2618	0.11	+0.1
3,134,302	+		Sama_2618	0.11	+0.4
3,134,303	-		Sama_2618	0.11	-0.5
3,134,303	-		Sama_2618	0.11	+0.1
3,134,303	-		Sama_2618	0.11	-0.1
3,134,303	-		Sama_2618	0.11	+0.1
3,134,303	-		Sama_2618	0.11	+0.4
3,134,306	-		Sama_2618	0.11	-0.7
3,134,306	-		Sama_2618	0.11	+0.3
3,134,308	+		Sama_2618	0.11	+0.7
3,134,309	-		Sama_2618	0.11	+0.4
3,134,309	-		Sama_2618	0.11	-0.3
3,134,309	-		Sama_2618	0.11	+0.2
3,134,309	-		Sama_2618	0.11	+0.2
3,134,309	-		Sama_2618	0.11	-0.4
3,134,309	-		Sama_2618	0.11	+0.1
3,134,309	-		Sama_2618	0.11	+0.9
3,134,313	-		Sama_2618	0.12	-0.4
3,134,313	-		Sama_2618	0.12	+0.7
3,134,338	-		Sama_2618	0.13	-0.5
3,134,338	-		Sama_2618	0.13	+0.7
3,134,383	-		Sama_2618	0.14	-0.3
3,134,383	-		Sama_2618	0.14	-0.2
3,134,388	+		Sama_2618	0.15	+1.5
3,134,388	+		Sama_2618	0.15	+0.5
3,134,388	+		Sama_2618	0.15	-0.3
3,134,389	-		Sama_2618	0.15	-1.0
3,134,389	-		Sama_2618	0.15	-2.1
3,134,389	-		Sama_2618	0.15	-0.3
3,134,415	+		Sama_2618	0.16	-0.3
3,134,434	+		Sama_2618	0.16	+0.3
3,134,434	+		Sama_2618	0.16	+0.0
3,134,434	+		Sama_2618	0.16	+0.6
3,134,435	-		Sama_2618	0.16	-1.1
3,134,435	-		Sama_2618	0.16	+0.3
3,134,435	-		Sama_2618	0.16	+0.7
3,134,435	-		Sama_2618	0.16	-0.0
3,134,435	-		Sama_2618	0.16	-0.3
3,134,435	-		Sama_2618	0.16	-1.9
3,134,435	-		Sama_2618	0.16	-2.0
3,134,437	-		Sama_2618	0.16	+0.7
3,134,456	-		Sama_2618	0.17	+0.7
3,134,456	-		Sama_2618	0.17	+0.4
3,134,479	+		Sama_2618	0.18	-1.6
3,134,479	+		Sama_2618	0.18	+0.7
3,134,480	-		Sama_2618	0.18	+1.2
3,134,480	-		Sama_2618	0.18	+2.1
3,134,554	+		Sama_2618	0.21	-0.1
3,134,555	-		Sama_2618	0.21	-0.2
3,134,555	-		Sama_2618	0.21	+1.1
3,134,555	-		Sama_2618	0.21	+0.3
3,134,555	-		Sama_2618	0.21	+0.7
3,134,555	-		Sama_2618	0.21	+2.4
3,134,586	+		Sama_2618	0.22	-0.9
3,134,586	+		Sama_2618	0.22	+0.1
3,134,586	+		Sama_2618	0.22	+0.3
3,134,586	+		Sama_2618	0.22	+0.7
3,134,586	+		Sama_2618	0.22	+0.7
3,134,586	+		Sama_2618	0.22	-0.4
3,134,586	+		Sama_2618	0.22	+0.2
3,134,587	-		Sama_2618	0.22	-1.0
3,134,587	-		Sama_2618	0.22	+0.0
3,134,618	-		Sama_2618	0.24	+0.5
3,134,618	-		Sama_2618	0.24	-1.6
3,134,637	+		Sama_2618	0.24	+0.7
3,134,637	+		Sama_2618	0.24	+0.7
3,134,637	+		Sama_2618	0.24	-0.9
3,134,638	-		Sama_2618	0.24	+0.5
3,134,676	+		Sama_2618	0.26	+0.1
3,134,677	-		Sama_2618	0.26	+0.1
3,134,777	+		Sama_2618	0.30	+2.7
3,134,777	+		Sama_2618	0.30	-0.4
3,134,778	-		Sama_2618	0.30	-1.1
3,134,778	-		Sama_2618	0.30	+0.7
3,134,778	-		Sama_2618	0.30	+0.7
3,134,799	+		Sama_2618	0.31	-0.1
3,134,799	+		Sama_2618	0.31	+0.3
3,134,799	+		Sama_2618	0.31	-0.9
3,134,800	-		Sama_2618	0.31	-0.3
3,134,800	-		Sama_2618	0.31	-0.4
3,134,800	-		Sama_2618	0.31	-0.9
3,134,800	-		Sama_2618	0.31	+0.1
3,134,800	-		Sama_2618	0.31	-1.1
3,134,802	+		Sama_2618	0.31	-1.1
3,134,802	+		Sama_2618	0.31	-0.3
3,134,803	-		Sama_2618	0.31	+0.3
3,134,803	-		Sama_2618	0.31	+0.8