Strain Fitness in Shewanella amazonensis SB2B around Sama_1251

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
1,535,334	+		Sama_1250	0.69	-0.5
1,535,334	+		Sama_1250	0.69	+0.1
1,535,335	-		Sama_1250	0.69	-2.1
1,535,360	+		Sama_1250	0.70	+0.7
1,535,361	-		Sama_1250	0.70	-0.4
1,535,361	-		Sama_1250	0.70	-1.0
1,535,378	-		Sama_1250	0.71	+0.3
1,535,579	+		Sama_1250	0.79	+0.8
1,535,579	+		Sama_1250	0.79	+0.4
1,535,579	+		Sama_1250	0.79	-0.0
1,535,580	-		Sama_1250	0.79	+1.7
1,535,591	+		Sama_1250	0.80	+0.1
1,535,678	+		Sama_1250	0.84	-0.5
1,535,678	+		Sama_1250	0.84	-0.0
1,535,679	-		Sama_1250	0.84	-2.3
1,535,723	+		Sama_1250	0.85	-0.2
1,535,724	-		Sama_1250	0.85	-0.6
1,535,724	-		Sama_1250	0.85	-1.0
1,535,736	+		Sama_1250	0.86	-0.9
1,535,737	-		Sama_1250	0.86	+0.1
1,535,803	+		Sama_1250	0.89	+0.4
1,535,803	+		Sama_1250	0.89	-0.8
1,535,804	-		Sama_1250	0.89	-1.4
1,535,807	-		Sama_1250	0.89	+0.6
1,535,807	-		Sama_1250	0.89	+0.1
1,535,814	-		Sama_1250	0.89	-0.3
1,535,903	-				+0.4
1,535,903	-				+0.7
1,535,910	-				+2.0
1,535,910	-				-0.3
1,535,967	-				-0.8
1,535,972	+				-0.5
1,535,972	+				-0.7
1,535,973	-				-0.7
1,535,973	-				-1.3
1,535,975	+				-0.6
1,535,975	+				-0.3
1,535,976	-				+0.1
1,535,976	-				+1.7
1,535,976	-				+0.7
1,535,976	-				-0.6
1,535,976	-				+0.2
1,535,976	-				+0.4
1,535,978	+				+0.5
1,535,978	+				-0.0
1,535,978	+				-0.0
1,535,979	-				-1.2
1,536,071	+				+0.7
1,536,071	+				-0.9
1,536,072	-				+0.5
1,536,072	-				+0.3
1,536,072	-				-0.0
1,536,072	-				-0.0
1,536,072	-				+1.0
1,536,132	+				+0.5
1,536,137	-				-0.6
1,536,278	+				+0.2
1,536,279	-				+1.7
1,536,321	-				+1.0
1,536,321	-				+0.7
1,536,559	+		Sama_1251	0.22	+1.7
1,536,559	+		Sama_1251	0.22	+0.3
1,536,559	+		Sama_1251	0.22	-1.0
1,536,561	+		Sama_1251	0.22	+1.1
1,536,598	+		Sama_1251	0.25	+1.0
1,536,613	+		Sama_1251	0.27	+0.4
1,536,657	+		Sama_1251	0.30	+0.6
1,536,676	+		Sama_1251	0.32	+0.3
1,536,676	+		Sama_1251	0.32	-0.3
1,536,676	+		Sama_1251	0.32	+0.9
1,536,676	+		Sama_1251	0.32	-0.8
1,536,688	+		Sama_1251	0.33	+0.1
1,536,700	+		Sama_1251	0.34	-0.3
1,536,700	+		Sama_1251	0.34	-0.1
1,536,700	+		Sama_1251	0.34	+1.0
1,536,738	+		Sama_1251	0.37	+0.3
1,536,742	+		Sama_1251	0.37	+0.5
1,536,742	+		Sama_1251	0.37	-0.3
1,536,742	+		Sama_1251	0.37	+1.0
1,536,743	-		Sama_1251	0.37	-0.9
1,536,786	+		Sama_1251	0.41	+0.3
1,536,786	+		Sama_1251	0.41	-1.6
1,536,799	+		Sama_1251	0.42	+0.5
1,536,804	+		Sama_1251	0.42	+1.7
1,536,805	-		Sama_1251	0.42	-0.3
1,536,826	+		Sama_1251	0.44	-1.0
1,536,826	+		Sama_1251	0.44	-0.5
1,536,826	+		Sama_1251	0.44	-0.9
1,536,946	+		Sama_1251	0.54	-0.2
1,536,946	+		Sama_1251	0.54	+0.1
1,536,948	+		Sama_1251	0.54	-0.3
1,536,948	+		Sama_1251	0.54	-0.1
1,536,948	+		Sama_1251	0.54	-1.0
1,536,948	+		Sama_1251	0.54	+0.2
1,536,948	+		Sama_1251	0.54	-0.9
1,536,948	+		Sama_1251	0.54	+1.8
1,536,952	+		Sama_1251	0.55	-0.1
1,536,952	+		Sama_1251	0.55	+1.0
1,536,952	+		Sama_1251	0.55	+0.1
1,536,952	+		Sama_1251	0.55	+1.9
1,536,972	+		Sama_1251	0.56	-0.5
1,536,972	+		Sama_1251	0.56	+1.7
1,537,039	+		Sama_1251	0.62	+0.8
1,537,039	+		Sama_1251	0.62	+0.4
1,537,039	+		Sama_1251	0.62	-0.7
1,537,040	-		Sama_1251	0.62	-1.3
1,537,044	+		Sama_1251	0.62	-0.0
1,537,078	+		Sama_1251	0.65	+2.1
1,537,078	+		Sama_1251	0.65	-0.6
1,537,123	+		Sama_1251	0.69	+0.4
1,537,134	+		Sama_1251	0.70	+0.7
1,537,134	+		Sama_1251	0.70	-0.5
1,537,138	+		Sama_1251	0.70	+0.7
1,537,138	+		Sama_1251	0.70	-0.3
1,537,138	+		Sama_1251	0.70	+0.7
1,537,138	+		Sama_1251	0.70	-0.9
1,537,138	+		Sama_1251	0.70	-0.1
1,537,144	+		Sama_1251	0.70	+0.3
1,537,144	+		Sama_1251	0.70	+1.1
1,537,161	+		Sama_1251	0.72	+0.7
1,537,161	+		Sama_1251	0.72	+0.7
1,537,161	+		Sama_1251	0.72	-0.1
1,537,161	+		Sama_1251	0.72	+0.3
1,537,172	+		Sama_1251	0.73	+0.2
1,537,172	+		Sama_1251	0.73	-0.5
1,537,172	+		Sama_1251	0.73	+1.1
1,537,172	+		Sama_1251	0.73	+0.9
1,537,172	+		Sama_1251	0.73	+0.7
1,537,172	+		Sama_1251	0.73	+1.1
1,537,172	+		Sama_1251	0.73	-0.0
1,537,172	+		Sama_1251	0.73	-0.4
1,537,172	+		Sama_1251	0.73	-0.9
1,537,172	+		Sama_1251	0.73	+0.7
1,537,172	+		Sama_1251	0.73	+2.4
1,537,172	+		Sama_1251	0.73	+0.7
1,537,172	+		Sama_1251	0.73	+0.7
1,537,172	+		Sama_1251	0.73	+0.1
1,537,172	+		Sama_1251	0.73	+2.7
1,537,172	+		Sama_1251	0.73	+0.7
1,537,172	+		Sama_1251	0.73	-0.1
1,537,172	+		Sama_1251	0.73	+0.9
1,537,173	-		Sama_1251	0.73	-1.9
1,537,173	-		Sama_1251	0.73	+1.7
1,537,200	+		Sama_1251	0.75	+0.7
1,537,250	+		Sama_1251	0.79	-0.6
1,537,255	+		Sama_1251	0.80	-0.2
1,537,255	+		Sama_1251	0.80	+0.9
1,537,255	+		Sama_1251	0.80	-1.9
1,537,255	+		Sama_1251	0.80	+0.7
1,537,255	+		Sama_1251	0.80	-0.1
1,537,255	+		Sama_1251	0.80	-0.5
1,537,257	+		Sama_1251	0.80	+0.4
1,537,257	+		Sama_1251	0.80	-0.4
1,537,257	+		Sama_1251	0.80	+0.7
1,537,282	+		Sama_1251	0.82	-0.9
1,537,352	+		Sama_1251	0.88	+1.0
1,537,357	+		Sama_1251	0.88	-0.7
1,537,357	+		Sama_1251	0.88	+0.7
1,537,358	-		Sama_1251	0.88	-0.9
1,537,358	-		Sama_1251	0.88	+0.3
1,537,368	+		Sama_1251	0.89	+0.5
1,537,384	+				+0.1
1,537,385	-				+1.3
1,537,398	+				+0.7
1,537,489	+				-0.5
1,537,577	-				-0.4
1,537,585	-				-1.6
1,537,594	+				-0.5
1,537,594	+				+0.7
1,537,594	+				-0.0
1,537,595	-				+0.3
1,537,610	+				+1.1
1,537,611	-				+0.4
1,537,614	+				-0.6
1,537,615	-				+0.7
1,537,615	-				-0.0
1,537,615	-				+1.3
1,537,615	-				+0.4
1,537,615	-				+3.0
1,537,615	-				-1.6
1,537,615	-				-2.3
1,537,673	+				+0.2
1,537,674	-				-1.3
1,537,674	-				-0.6
1,537,686	+				-0.3
1,537,714	+				-0.2
1,537,785	+				-0.6
1,537,786	-				-0.9
1,537,825	+				-0.9
1,537,825	+				-0.2
1,537,849	+				+0.8
1,537,860	+				+0.5
1,537,860	+				-0.2
1,537,861	-				-0.3
1,537,861	-				-0.9
1,537,898	+				+0.5
1,537,899	-				+0.9
1,537,899	-				-1.6
1,537,901	+				+0.2
1,537,901	+				+2.0
1,537,902	-				+0.2
1,537,902	-				+0.0
1,537,902	-				-0.4
1,537,902	-				+0.4
1,537,940	+				+0.9
1,537,940	+				+0.3
1,537,940	+				+2.3
1,537,940	+				+0.6
1,537,940	+				+0.7
1,537,940	+				+0.8
1,537,940	+				+0.1
1,537,940	+				+1.0
1,537,941	-				-0.0
1,537,941	-				+0.5
1,537,941	-				-0.5
1,537,941	-				+0.3
1,537,942	+				+0.4
1,537,942	+				-0.3
1,537,943	-				-1.8
1,537,943	-				+0.2
1,537,943	-				+1.0
1,537,943	-				-1.3
1,537,943	-				+0.7
1,537,982	+				+0.7
1,537,996	-				-0.9
1,538,004	+				+0.9
1,538,005	-				-0.6
1,538,005	-				+0.7
1,538,069	+				+0.7
1,538,069	+				+0.7
1,538,069	+				-0.0
1,538,069	+				-0.0
1,538,069	+				-1.1
1,538,069	+				-0.0
1,538,069	+				-0.5
1,538,070	-				-1.5
1,538,070	-				+0.5
1,538,070	-				+0.3
1,538,070	-				-0.1
1,538,073	+				+1.4
1,538,074	-				-0.5
1,538,091	-				-0.2
1,538,091	-				-0.5
1,538,091	-				+0.3
1,538,091	-				+1.1
1,538,193	+		Sama_1252	0.12	+0.0
1,538,194	-		Sama_1252	0.12	+0.1
1,538,244	+		Sama_1252	0.14	-1.3
1,538,245	-		Sama_1252	0.14	-1.3
1,538,245	-		Sama_1252	0.14	+0.7
1,538,250	+		Sama_1252	0.15	+0.0
1,538,250	+		Sama_1252	0.15	+0.9
1,538,257	+		Sama_1252	0.15	-0.3
1,538,257	+		Sama_1252	0.15	+0.1
1,538,257	+		Sama_1252	0.15	+1.0
1,538,257	+		Sama_1252	0.15	-1.3
1,538,257	+		Sama_1252	0.15	+0.5
1,538,258	-		Sama_1252	0.15	+0.3
1,538,258	-		Sama_1252	0.15	-0.9
1,538,258	-		Sama_1252	0.15	+0.4
1,538,258	-		Sama_1252	0.15	-0.5
1,538,268	+		Sama_1252	0.15	-0.9
1,538,327	+		Sama_1252	0.17	-2.8
1,538,327	+		Sama_1252	0.17	+0.4
1,538,328	-		Sama_1252	0.17	+2.0
1,538,328	-		Sama_1252	0.17	+0.9
1,538,361	+		Sama_1252	0.19	-0.2
1,538,361	+		Sama_1252	0.19	-1.6
1,538,380	+		Sama_1252	0.19	+2.7
1,538,381	-		Sama_1252	0.19	+0.3
1,538,436	+		Sama_1252	0.21	-0.9
1,538,437	-		Sama_1252	0.21	+0.7
1,538,464	-		Sama_1252	0.22	-0.3
1,538,464	-		Sama_1252	0.22	-0.7
1,538,464	-		Sama_1252	0.22	-0.3
1,538,477	-		Sama_1252	0.23	+1.9