Strain Fitness in Shewanella amazonensis SB2B around Sama_1076

Experiment: L-Lysine 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Lysine 200 mM
1,302,079	+		Sama_1075	0.40	-2.1
1,302,079	+		Sama_1075	0.40	+0.1
1,302,079	+		Sama_1075	0.40	-4.2
1,302,079	+		Sama_1075	0.40	-2.6
1,302,079	+		Sama_1075	0.40	-0.3
1,302,102	+		Sama_1075	0.42	-2.9
1,302,103	-		Sama_1075	0.42	-0.9
1,302,103	-		Sama_1075	0.42	-0.9
1,302,137	+		Sama_1075	0.45	-0.9
1,302,138	-		Sama_1075	0.45	-2.5
1,302,138	-		Sama_1075	0.45	-2.5
1,302,231	+		Sama_1075	0.52	-1.6
1,302,231	+		Sama_1075	0.52	-1.9
1,302,314	+		Sama_1075	0.58	-1.6
1,302,314	+		Sama_1075	0.58	-2.2
1,302,315	-		Sama_1075	0.58	-2.3
1,302,315	-		Sama_1075	0.58	-1.5
1,302,315	-		Sama_1075	0.58	-0.9
1,302,315	-		Sama_1075	0.58	-0.9
1,302,315	-		Sama_1075	0.58	-1.6
1,302,315	-		Sama_1075	0.58	+0.1
1,302,328	+		Sama_1075	0.59	-2.0
1,302,329	-		Sama_1075	0.59	-1.8
1,302,329	-		Sama_1075	0.59	-1.9
1,302,353	+		Sama_1075	0.61	-0.9
1,302,354	-		Sama_1075	0.61	-3.2
1,302,354	-		Sama_1075	0.61	-2.2
1,302,392	-		Sama_1075	0.64	-2.6
1,302,453	+		Sama_1075	0.69	-0.3
1,302,453	+		Sama_1075	0.69	-2.2
1,302,453	+		Sama_1075	0.69	-1.6
1,302,453	+		Sama_1075	0.69	-2.8
1,302,453	+		Sama_1075	0.69	-1.9
1,302,454	-		Sama_1075	0.69	-2.4
1,302,454	-		Sama_1075	0.69	-0.9
1,302,454	-		Sama_1075	0.69	-0.9
1,302,454	-		Sama_1075	0.69	-0.3
1,302,455	+		Sama_1075	0.69	-1.2
1,302,455	+		Sama_1075	0.69	-1.9
1,302,455	+		Sama_1075	0.69	-2.5
1,302,455	+		Sama_1075	0.69	-1.3
1,302,455	+		Sama_1075	0.69	-0.0
1,302,455	+		Sama_1075	0.69	-0.3
1,302,455	+		Sama_1075	0.69	-2.6
1,302,456	-		Sama_1075	0.69	-1.6
1,302,456	-		Sama_1075	0.69	-1.9
1,302,456	-		Sama_1075	0.69	-1.4
1,302,456	-		Sama_1075	0.69	-0.3
1,302,456	-		Sama_1075	0.69	-0.4
1,302,456	-		Sama_1075	0.69	-1.5
1,302,472	+		Sama_1075	0.70	-1.9
1,302,472	+		Sama_1075	0.70	-1.3
1,302,472	+		Sama_1075	0.70	-1.7
1,302,472	+		Sama_1075	0.70	-2.4
1,302,473	-		Sama_1075	0.70	-1.3
1,302,473	-		Sama_1075	0.70	-1.3
1,302,473	-		Sama_1075	0.70	+0.7
1,302,528	-		Sama_1075	0.75	-1.9
1,302,553	-		Sama_1075	0.77	-2.2
1,302,554	+		Sama_1075	0.77	-1.6
1,302,554	+		Sama_1075	0.77	-1.1
1,302,555	-		Sama_1075	0.77	+0.1
1,302,572	+		Sama_1075	0.78	-1.9
1,302,774	+				-1.3
1,302,774	+				-2.1
1,302,774	+				+0.3
1,302,774	+				-0.1
1,302,774	+				-1.2
1,302,774	+				-0.6
1,302,775	-				-2.1
1,302,775	-				-3.4
1,302,775	-				-1.6
1,302,775	-				+0.7
1,302,775	-				-0.6
1,302,775	-				-1.5
1,302,803	+				-2.3
1,302,804	-				-2.2
1,302,819	-				+0.3
1,302,855	+				+1.3
1,302,855	+				+0.1
1,302,855	+				-0.6
1,302,856	-				+1.7
1,302,874	+				+0.1
1,302,874	+				+0.5
1,302,887	-				+0.2
1,302,887	-				-0.0
1,302,909	-				-0.0
1,302,909	-				-0.3
1,302,955	+				+3.0
1,302,955	+				+0.4
1,302,956	-				+0.5
1,302,956	-				+0.4
1,302,956	-				-0.8
1,302,956	-				+1.6
1,302,975	+				+0.2
1,302,975	+				-0.3
1,302,975	+				+0.6
1,302,976	-				+0.0
1,303,000	-				+1.1
1,303,166	+		Sama_1076	0.13	-1.0
1,303,180	+		Sama_1076	0.14	-0.2
1,303,239	+		Sama_1076	0.20	-0.3
1,303,280	+		Sama_1076	0.24	-0.3
1,303,374	+		Sama_1076	0.34	-0.3
1,303,380	+		Sama_1076	0.35	-0.5
1,303,380	+		Sama_1076	0.35	-0.3
1,303,380	+		Sama_1076	0.35	-0.0
1,303,380	+		Sama_1076	0.35	-0.6
1,303,380	+		Sama_1076	0.35	-2.3
1,303,380	+		Sama_1076	0.35	-1.1
1,303,380	+		Sama_1076	0.35	-1.2
1,303,402	+		Sama_1076	0.37	-1.0
1,303,490	+		Sama_1076	0.46	-0.5
1,303,496	+		Sama_1076	0.47	-0.9
1,303,496	+		Sama_1076	0.47	-1.9
1,303,496	+		Sama_1076	0.47	-0.3
1,303,575	+		Sama_1076	0.55	-1.3
1,303,583	+		Sama_1076	0.55	-0.4
1,303,583	+		Sama_1076	0.55	-1.3
1,303,583	+		Sama_1076	0.55	-0.3
1,303,598	+		Sama_1076	0.57	-1.6
1,303,602	+		Sama_1076	0.57	-0.6
1,303,602	+		Sama_1076	0.57	-0.9
1,303,734	+		Sama_1076	0.71	-0.3
1,303,820	+		Sama_1076	0.80	-1.4
1,303,820	+		Sama_1076	0.80	+0.3
1,303,824	+		Sama_1076	0.80	+1.4
1,303,824	+		Sama_1076	0.80	+0.7
1,303,824	+		Sama_1076	0.80	+0.7
1,303,845	+		Sama_1076	0.82	+0.6
1,303,845	+		Sama_1076	0.82	+1.3
1,303,845	+		Sama_1076	0.82	-0.2
1,303,845	+		Sama_1076	0.82	-0.2
1,303,845	+		Sama_1076	0.82	+0.5
1,303,845	+		Sama_1076	0.82	+1.7
1,303,845	+		Sama_1076	0.82	-1.2
1,303,851	+		Sama_1076	0.83	-1.3
1,303,851	+		Sama_1076	0.83	-0.6
1,303,851	+		Sama_1076	0.83	-0.4
1,303,851	+		Sama_1076	0.83	-0.5
1,303,908	+		Sama_1076	0.89	+0.0
1,303,908	+		Sama_1076	0.89	+0.1
1,303,908	+		Sama_1076	0.89	-0.0
1,303,975	+				-0.8
1,303,975	+				+0.3
1,303,975	+				-0.6
1,303,976	-				-1.1
1,304,014	-				-1.5
1,304,137	+				-0.8
1,304,137	+				+1.7
1,304,137	+				+1.0
1,304,137	+				-0.6
1,304,138	-				-0.1
1,304,138	-				+0.7
1,304,138	-				-0.2
1,304,138	-				-0.3
1,304,203	+				+2.3
1,304,296	+		Sama_1077	0.11	+0.1
1,304,296	+		Sama_1077	0.11	-0.2
1,304,297	-		Sama_1077	0.11	-1.6
1,304,392	+		Sama_1077	0.21	+0.6
1,304,392	+		Sama_1077	0.21	-2.3
1,304,393	-		Sama_1077	0.22	-1.0
1,304,393	-		Sama_1077	0.22	+0.2
1,304,393	-		Sama_1077	0.22	+1.7
1,304,410	-		Sama_1077	0.23	+0.3
1,304,451	+		Sama_1077	0.28	+0.4
1,304,451	+		Sama_1077	0.28	+0.9
1,304,451	+		Sama_1077	0.28	-0.7
1,304,451	+		Sama_1077	0.28	-1.3
1,304,451	+		Sama_1077	0.28	+0.2
1,304,452	-		Sama_1077	0.28	-0.1
1,304,538	+		Sama_1077	0.38	-0.2
1,304,539	-		Sama_1077	0.38	-0.2
1,304,649	+		Sama_1077	0.50	-1.1
1,304,673	+		Sama_1077	0.52	-1.0
1,304,673	+		Sama_1077	0.52	-0.5
1,304,674	-		Sama_1077	0.53	+1.7
1,304,674	-		Sama_1077	0.53	+0.1
1,304,682	+		Sama_1077	0.53	+0.7
1,304,682	+		Sama_1077	0.53	-0.0
1,304,682	+		Sama_1077	0.53	+0.4
1,304,682	+		Sama_1077	0.53	+0.3
1,304,682	+		Sama_1077	0.53	+1.7
1,304,682	+		Sama_1077	0.53	-1.2
1,304,682	+		Sama_1077	0.53	-1.2
1,304,682	+		Sama_1077	0.53	-0.9
1,304,682	+		Sama_1077	0.53	-0.5
1,304,682	+		Sama_1077	0.53	-0.4
1,304,683	-		Sama_1077	0.54	+1.9
1,304,683	-		Sama_1077	0.54	-0.2
1,304,683	-		Sama_1077	0.54	-0.8
1,304,683	-		Sama_1077	0.54	-0.6
1,304,683	-		Sama_1077	0.54	+0.5
1,304,683	-		Sama_1077	0.54	-0.1
1,304,683	-		Sama_1077	0.54	+0.4
1,304,683	-		Sama_1077	0.54	-0.1
1,304,683	-		Sama_1077	0.54	-0.9
1,304,683	-		Sama_1077	0.54	-0.4
1,304,721	+		Sama_1077	0.58	-0.1
1,304,772	+		Sama_1077	0.63	-0.2
1,304,772	+		Sama_1077	0.63	-0.7
1,304,772	+		Sama_1077	0.63	-0.3
1,304,772	+		Sama_1077	0.63	-0.8
1,304,772	+		Sama_1077	0.63	-1.5
1,304,772	+		Sama_1077	0.63	+1.3
1,304,773	-		Sama_1077	0.63	-0.4
1,304,773	-		Sama_1077	0.63	+0.5
1,304,773	-		Sama_1077	0.63	+1.1
1,304,817	+		Sama_1077	0.68	-1.3
1,304,817	+		Sama_1077	0.68	-1.1
1,304,817	+		Sama_1077	0.68	-0.0
1,304,817	+		Sama_1077	0.68	+0.9
1,304,817	+		Sama_1077	0.68	-1.1
1,304,817	+		Sama_1077	0.68	+0.1
1,304,817	+		Sama_1077	0.68	+0.0
1,304,818	-		Sama_1077	0.68	-0.2
1,304,818	-		Sama_1077	0.68	-0.8
1,304,818	-		Sama_1077	0.68	+0.7
1,304,826	+		Sama_1077	0.69	+0.0
1,304,840	-		Sama_1077	0.71	+0.1
1,304,844	+		Sama_1077	0.71	-0.7
1,304,844	+		Sama_1077	0.71	+0.3
1,304,844	+		Sama_1077	0.71	+0.2
1,304,844	+		Sama_1077	0.71	+1.0
1,304,844	+		Sama_1077	0.71	-0.2
1,304,844	+		Sama_1077	0.71	-0.2
1,304,845	-		Sama_1077	0.71	-1.1
1,304,845	-		Sama_1077	0.71	+0.2
1,304,845	-		Sama_1077	0.71	+0.1
1,304,845	-		Sama_1077	0.71	-0.4
1,304,845	-		Sama_1077	0.71	-0.3
1,304,899	+		Sama_1077	0.77	-0.5
1,304,911	+		Sama_1077	0.79	+0.5
1,304,912	-		Sama_1077	0.79	+0.7
1,304,912	-		Sama_1077	0.79	-0.0
1,304,936	+		Sama_1077	0.81	-0.1
1,304,936	+		Sama_1077	0.81	+0.5
1,304,936	+		Sama_1077	0.81	-1.1
1,304,936	+		Sama_1077	0.81	-1.6
1,304,936	+		Sama_1077	0.81	+0.2
1,304,937	-		Sama_1077	0.82	-0.1
1,304,937	-		Sama_1077	0.82	-0.3
1,304,937	-		Sama_1077	0.82	-0.8
1,304,957	+		Sama_1077	0.84	-0.7
1,304,957	+		Sama_1077	0.84	+0.8
1,304,957	+		Sama_1077	0.84	-0.4
1,304,957	+		Sama_1077	0.84	-0.3
1,304,958	-		Sama_1077	0.84	+1.1
1,304,958	-		Sama_1077	0.84	+0.2
1,304,989	+		Sama_1077	0.87	-0.6
1,304,990	-		Sama_1077	0.87	-0.9
1,304,999	-		Sama_1077	0.88	-0.8