Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0635 and Sama_0636 are separated by 174 nucleotides Sama_0636 and Sama_0637 are separated by 67 nucleotides Sama_0637 and Sama_0638 overlap by 10 nucleotides
Sama_0635: Sama_0635 - serine protease (RefSeq), at 787,020 to 792,071
_0635
Sama_0636: Sama_0636 - chromate transporter (RefSeq), at 792,246 to 793,391
_0636
Sama_0637: Sama_0637 - hypothetical protein (RefSeq), at 793,459 to 794,064
_0637
Sama_0638: Sama_0638 - TPR domain-containing protein (RefSeq), at 794,055 to 795,434
_0638
Position (kb) 792
793
794 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 791.323 kb on - strand, within Sama_0635 at 791.351 kb on + strand, within Sama_0635 at 791.351 kb on + strand, within Sama_0635 at 791.351 kb on + strand, within Sama_0635 at 791.352 kb on - strand, within Sama_0635 at 791.352 kb on - strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.405 kb on + strand, within Sama_0635 at 791.406 kb on - strand, within Sama_0635 at 791.406 kb on - strand, within Sama_0635 at 791.406 kb on - strand, within Sama_0635 at 791.406 kb on - strand, within Sama_0635 at 791.409 kb on + strand, within Sama_0635 at 791.410 kb on - strand, within Sama_0635 at 791.410 kb on - strand, within Sama_0635 at 791.410 kb on - strand, within Sama_0635 at 791.416 kb on - strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.433 kb on + strand, within Sama_0635 at 791.434 kb on - strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.435 kb on + strand, within Sama_0635 at 791.436 kb on - strand, within Sama_0635 at 791.436 kb on - strand, within Sama_0635 at 791.436 kb on - strand, within Sama_0635 at 791.449 kb on + strand, within Sama_0635 at 791.449 kb on + strand, within Sama_0635 at 791.450 kb on - strand, within Sama_0635 at 791.460 kb on - strand, within Sama_0635 at 791.499 kb on + strand, within Sama_0635 at 791.499 kb on + strand, within Sama_0635 at 791.500 kb on - strand, within Sama_0635 at 791.506 kb on - strand, within Sama_0635 at 791.596 kb on + strand at 791.647 kb on + strand at 791.658 kb on - strand at 791.719 kb on - strand at 791.759 kb on + strand at 791.822 kb on + strand at 791.822 kb on + strand at 791.822 kb on + strand at 791.823 kb on - strand at 791.843 kb on - strand at 791.872 kb on + strand at 791.872 kb on + strand at 791.872 kb on + strand at 791.873 kb on - strand at 791.873 kb on - strand at 791.873 kb on - strand at 791.873 kb on - strand at 791.873 kb on - strand at 791.915 kb on + strand at 791.926 kb on + strand at 791.926 kb on + strand at 791.926 kb on + strand at 791.926 kb on + strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.927 kb on - strand at 791.929 kb on + strand at 791.929 kb on + strand at 791.929 kb on + strand at 791.929 kb on + strand at 791.930 kb on - strand at 792.069 kb on + strand at 792.069 kb on + strand at 792.069 kb on + strand at 792.070 kb on - strand at 792.070 kb on - strand at 792.099 kb on + strand at 792.099 kb on + strand at 792.099 kb on + strand at 792.100 kb on - strand at 792.100 kb on - strand at 792.180 kb on - strand at 792.180 kb on - strand at 792.208 kb on + strand at 792.208 kb on + strand at 792.208 kb on + strand at 792.209 kb on - strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.245 kb on + strand at 792.246 kb on - strand at 792.246 kb on - strand at 792.246 kb on - strand at 792.246 kb on - strand at 792.318 kb on + strand at 792.318 kb on + strand at 792.319 kb on - strand at 792.479 kb on + strand, within Sama_0636 at 792.489 kb on - strand, within Sama_0636 at 792.489 kb on - strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.513 kb on + strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.514 kb on - strand, within Sama_0636 at 792.581 kb on + strand, within Sama_0636 at 792.582 kb on - strand, within Sama_0636 at 792.582 kb on - strand, within Sama_0636 at 792.665 kb on + strand, within Sama_0636 at 792.665 kb on + strand, within Sama_0636 at 792.665 kb on + strand, within Sama_0636 at 792.666 kb on - strand, within Sama_0636 at 792.682 kb on + strand, within Sama_0636 at 792.682 kb on + strand, within Sama_0636 at 792.682 kb on + strand, within Sama_0636 at 792.682 kb on + strand, within Sama_0636 at 792.683 kb on - strand, within Sama_0636 at 792.724 kb on + strand, within Sama_0636 at 792.825 kb on - strand, within Sama_0636 at 792.849 kb on + strand, within Sama_0636 at 792.849 kb on + strand, within Sama_0636 at 793.005 kb on + strand, within Sama_0636 at 793.005 kb on + strand, within Sama_0636 at 793.005 kb on + strand, within Sama_0636 at 793.041 kb on - strand, within Sama_0636 at 793.115 kb on + strand, within Sama_0636 at 793.135 kb on + strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.136 kb on - strand, within Sama_0636 at 793.210 kb on + strand, within Sama_0636 at 793.211 kb on - strand, within Sama_0636 at 793.249 kb on - strand, within Sama_0636 at 793.249 kb on - strand, within Sama_0636 at 793.321 kb on + strand at 793.407 kb on + strand at 793.443 kb on - strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.460 kb on + strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.461 kb on - strand at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.562 kb on + strand, within Sama_0637 at 793.563 kb on - strand, within Sama_0637 at 793.563 kb on - strand, within Sama_0637 at 793.563 kb on - strand, within Sama_0637 at 793.563 kb on - strand, within Sama_0637 at 793.565 kb on + strand, within Sama_0637 at 793.565 kb on + strand, within Sama_0637 at 793.566 kb on - strand, within Sama_0637 at 793.566 kb on - strand, within Sama_0637 at 793.566 kb on - strand, within Sama_0637 at 793.566 kb on - strand, within Sama_0637 at 793.617 kb on - strand, within Sama_0637 at 793.617 kb on - strand, within Sama_0637 at 793.617 kb on - strand, within Sama_0637 at 793.617 kb on - strand, within Sama_0637 at 793.625 kb on + strand, within Sama_0637 at 793.625 kb on + strand, within Sama_0637 at 793.625 kb on + strand, within Sama_0637 at 793.626 kb on - strand, within Sama_0637 at 793.626 kb on - strand, within Sama_0637 at 793.626 kb on - strand, within Sama_0637 at 793.737 kb on + strand, within Sama_0637 at 793.797 kb on + strand, within Sama_0637 at 793.798 kb on - strand, within Sama_0637 at 793.798 kb on - strand, within Sama_0637 at 793.798 kb on - strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.801 kb on + strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.802 kb on - strand, within Sama_0637 at 793.914 kb on + strand, within Sama_0637 at 793.980 kb on - strand, within Sama_0637 at 793.980 kb on - strand, within Sama_0637 at 794.052 kb on + strand at 794.052 kb on + strand at 794.066 kb on + strand at 794.066 kb on + strand at 794.087 kb on - strand at 794.087 kb on - strand at 794.145 kb on + strand at 794.145 kb on + strand at 794.145 kb on + strand at 794.145 kb on + strand at 794.145 kb on + strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.146 kb on - strand at 794.151 kb on + strand at 794.151 kb on + strand at 794.151 kb on + strand at 794.151 kb on + strand at 794.152 kb on - strand at 794.152 kb on - strand at 794.152 kb on - strand at 794.178 kb on - strand at 794.186 kb on - strand at 794.186 kb on - strand at 794.186 kb on - strand at 794.250 kb on + strand, within Sama_0638 at 794.250 kb on + strand, within Sama_0638 at 794.268 kb on + strand, within Sama_0638 at 794.268 kb on + strand, within Sama_0638 at 794.268 kb on + strand, within Sama_0638 at 794.269 kb on - strand, within Sama_0638 at 794.269 kb on - strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.271 kb on + strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.272 kb on - strand, within Sama_0638 at 794.368 kb on + strand, within Sama_0638 at 794.369 kb on - strand, within Sama_0638 at 794.369 kb on - strand, within Sama_0638 at 794.369 kb on - strand, within Sama_0638
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 791,323 - Sama_0635 0.85 +0.3 791,351 + Sama_0635 0.86 -1.5 791,351 + Sama_0635 0.86 -0.5 791,351 + Sama_0635 0.86 +1.2 791,352 - Sama_0635 0.86 +0.1 791,352 - Sama_0635 0.86 +0.5 791,405 + Sama_0635 0.87 +0.0 791,405 + Sama_0635 0.87 -0.4 791,405 + Sama_0635 0.87 -0.7 791,405 + Sama_0635 0.87 +1.1 791,405 + Sama_0635 0.87 -0.7 791,405 + Sama_0635 0.87 -0.1 791,406 - Sama_0635 0.87 -0.7 791,406 - Sama_0635 0.87 +0.1 791,406 - Sama_0635 0.87 -0.0 791,406 - Sama_0635 0.87 -0.4 791,409 + Sama_0635 0.87 +0.5 791,410 - Sama_0635 0.87 +1.6 791,410 - Sama_0635 0.87 +0.8 791,410 - Sama_0635 0.87 +0.3 791,416 - Sama_0635 0.87 +0.2 791,433 + Sama_0635 0.87 -1.5 791,433 + Sama_0635 0.87 -1.0 791,433 + Sama_0635 0.87 +0.1 791,433 + Sama_0635 0.87 +0.5 791,433 + Sama_0635 0.87 -0.7 791,434 - Sama_0635 0.87 -0.2 791,435 + Sama_0635 0.87 +0.5 791,435 + Sama_0635 0.87 -1.2 791,435 + Sama_0635 0.87 +0.8 791,435 + Sama_0635 0.87 -0.7 791,435 + Sama_0635 0.87 +1.0 791,436 - Sama_0635 0.87 +1.5 791,436 - Sama_0635 0.87 +1.0 791,436 - Sama_0635 0.87 -0.2 791,449 + Sama_0635 0.88 -0.2 791,449 + Sama_0635 0.88 +0.4 791,450 - Sama_0635 0.88 -0.9 791,460 - Sama_0635 0.88 -0.7 791,499 + Sama_0635 0.89 -0.1 791,499 + Sama_0635 0.89 -0.0 791,500 - Sama_0635 0.89 +0.2 791,506 - Sama_0635 0.89 +0.5 791,596 + +0.4 791,647 + -0.2 791,658 - -1.5 791,719 - +0.1 791,759 + +0.3 791,822 + -0.2 791,822 + +0.0 791,822 + +0.2 791,823 - +0.1 791,843 - -0.8 791,872 + +0.3 791,872 + +0.8 791,872 + +1.2 791,873 - -0.5 791,873 - -0.3 791,873 - -0.2 791,873 - -1.6 791,873 - -0.4 791,915 + -0.0 791,926 + -0.1 791,926 + -0.5 791,926 + +0.3 791,926 + -0.2 791,927 - +0.0 791,927 - +0.0 791,927 - -0.6 791,927 - +0.5 791,927 - -0.6 791,927 - -0.2 791,929 + +0.8 791,929 + -1.2 791,929 + +0.8 791,929 + +0.7 791,930 - -1.8 792,069 + -0.3 792,069 + +0.0 792,069 + +0.1 792,070 - +0.3 792,070 - +0.1 792,099 + -2.2 792,099 + -0.2 792,099 + +0.1 792,100 - -0.0 792,100 - -0.0 792,180 - -1.0 792,180 - +1.6 792,208 + -0.4 792,208 + -0.2 792,208 + +0.5 792,209 - +0.2 792,245 + -0.7 792,245 + -0.4 792,245 + +0.3 792,245 + -0.2 792,245 + -0.3 792,245 + +0.1 792,246 - +0.5 792,246 - -0.2 792,246 - +0.6 792,246 - -0.3 792,318 + -0.2 792,318 + +0.9 792,319 - -0.5 792,479 + Sama_0636 0.20 -0.2 792,489 - Sama_0636 0.21 -1.5 792,489 - Sama_0636 0.21 +0.2 792,513 + Sama_0636 0.23 -0.4 792,513 + Sama_0636 0.23 -0.3 792,513 + Sama_0636 0.23 +0.3 792,513 + Sama_0636 0.23 -1.3 792,513 + Sama_0636 0.23 -0.1 792,513 + Sama_0636 0.23 +0.2 792,513 + Sama_0636 0.23 +0.8 792,513 + Sama_0636 0.23 +1.2 792,513 + Sama_0636 0.23 -0.2 792,513 + Sama_0636 0.23 -0.4 792,513 + Sama_0636 0.23 +0.9 792,514 - Sama_0636 0.23 +0.6 792,514 - Sama_0636 0.23 +0.0 792,514 - Sama_0636 0.23 -0.2 792,514 - Sama_0636 0.23 -0.3 792,514 - Sama_0636 0.23 -0.6 792,581 + Sama_0636 0.29 +0.0 792,582 - Sama_0636 0.29 -0.9 792,582 - Sama_0636 0.29 -1.2 792,665 + Sama_0636 0.37 +0.7 792,665 + Sama_0636 0.37 +0.9 792,665 + Sama_0636 0.37 -0.2 792,666 - Sama_0636 0.37 -0.0 792,682 + Sama_0636 0.38 -0.7 792,682 + Sama_0636 0.38 -0.6 792,682 + Sama_0636 0.38 -0.0 792,682 + Sama_0636 0.38 -0.2 792,683 - Sama_0636 0.38 -0.6 792,724 + Sama_0636 0.42 -0.2 792,825 - Sama_0636 0.51 +0.3 792,849 + Sama_0636 0.53 -0.2 792,849 + Sama_0636 0.53 -0.5 793,005 + Sama_0636 0.66 -1.2 793,005 + Sama_0636 0.66 -0.0 793,005 + Sama_0636 0.66 -0.3 793,041 - Sama_0636 0.69 -0.1 793,115 + Sama_0636 0.76 -0.5 793,135 + Sama_0636 0.78 -1.2 793,136 - Sama_0636 0.78 -0.5 793,136 - Sama_0636 0.78 +1.0 793,136 - Sama_0636 0.78 +0.1 793,136 - Sama_0636 0.78 -1.7 793,136 - Sama_0636 0.78 +0.0 793,136 - Sama_0636 0.78 +1.0 793,210 + Sama_0636 0.84 -0.3 793,211 - Sama_0636 0.84 +0.5 793,249 - Sama_0636 0.88 -1.7 793,249 - Sama_0636 0.88 +1.1 793,321 + +2.4 793,407 + +0.7 793,443 - -1.5 793,460 + -0.3 793,460 + -3.0 793,460 + +1.2 793,460 + -0.1 793,460 + -0.2 793,460 + +0.5 793,460 + -0.0 793,460 + +0.8 793,460 + +0.7 793,460 + -0.1 793,460 + +0.1 793,461 - +0.8 793,461 - -0.2 793,461 - -0.6 793,461 - -0.3 793,461 - -1.3 793,461 - -0.1 793,461 - -0.5 793,461 - -0.1 793,461 - +0.5 793,461 - +0.3 793,562 + Sama_0637 0.17 -0.9 793,562 + Sama_0637 0.17 -1.7 793,562 + Sama_0637 0.17 -2.1 793,562 + Sama_0637 0.17 -1.5 793,562 + Sama_0637 0.17 -0.8 793,562 + Sama_0637 0.17 -1.3 793,563 - Sama_0637 0.17 -1.0 793,563 - Sama_0637 0.17 -0.2 793,563 - Sama_0637 0.17 -1.9 793,563 - Sama_0637 0.17 -1.9 793,565 + Sama_0637 0.17 -1.3 793,565 + Sama_0637 0.17 -1.7 793,566 - Sama_0637 0.18 -0.3 793,566 - Sama_0637 0.18 -0.6 793,566 - Sama_0637 0.18 +0.5 793,566 - Sama_0637 0.18 -0.7 793,617 - Sama_0637 0.26 -1.4 793,617 - Sama_0637 0.26 -1.2 793,617 - Sama_0637 0.26 -2.0 793,617 - Sama_0637 0.26 -1.5 793,625 + Sama_0637 0.27 -0.4 793,625 + Sama_0637 0.27 -2.0 793,625 + Sama_0637 0.27 -1.9 793,626 - Sama_0637 0.28 -1.2 793,626 - Sama_0637 0.28 -1.7 793,626 - Sama_0637 0.28 -2.5 793,737 + Sama_0637 0.46 -0.2 793,797 + Sama_0637 0.56 +0.4 793,798 - Sama_0637 0.56 -1.4 793,798 - Sama_0637 0.56 -1.6 793,798 - Sama_0637 0.56 -2.3 793,801 + Sama_0637 0.56 -0.5 793,801 + Sama_0637 0.56 -0.9 793,801 + Sama_0637 0.56 -0.2 793,801 + Sama_0637 0.56 -2.0 793,801 + Sama_0637 0.56 -1.9 793,801 + Sama_0637 0.56 +0.8 793,802 - Sama_0637 0.57 -1.7 793,802 - Sama_0637 0.57 -1.2 793,802 - Sama_0637 0.57 -2.1 793,802 - Sama_0637 0.57 -0.2 793,802 - Sama_0637 0.57 -1.2 793,914 + Sama_0637 0.75 +1.8 793,980 - Sama_0637 0.86 -1.3 793,980 - Sama_0637 0.86 -1.8 794,052 + -0.7 794,052 + -0.4 794,066 + -0.5 794,066 + -0.4 794,087 - -0.2 794,087 - +0.2 794,145 + -0.0 794,145 + -0.9 794,145 + +0.5 794,145 + -1.1 794,145 + +1.2 794,146 - -0.9 794,146 - +0.4 794,146 - -1.2 794,146 - -0.4 794,146 - -0.4 794,146 - +0.4 794,146 - -0.3 794,146 - -1.2 794,146 - +0.0 794,146 - +1.1 794,146 - -1.6 794,151 + -1.5 794,151 + -0.0 794,151 + +0.2 794,151 + +0.7 794,152 - -2.0 794,152 - -1.7 794,152 - +1.3 794,178 - -0.5 794,186 - +0.8 794,186 - +1.5 794,186 - -0.6 794,250 + Sama_0638 0.14 +0.0 794,250 + Sama_0638 0.14 -0.1 794,268 + Sama_0638 0.15 -0.1 794,268 + Sama_0638 0.15 -1.3 794,268 + Sama_0638 0.15 +0.4 794,269 - Sama_0638 0.16 -0.3 794,269 - Sama_0638 0.16 -1.4 794,271 + Sama_0638 0.16 -0.6 794,271 + Sama_0638 0.16 +0.4 794,271 + Sama_0638 0.16 -1.4 794,271 + Sama_0638 0.16 -0.4 794,271 + Sama_0638 0.16 -0.3 794,271 + Sama_0638 0.16 +0.5 794,271 + Sama_0638 0.16 -0.2 794,271 + Sama_0638 0.16 +0.1 794,272 - Sama_0638 0.16 -0.7 794,272 - Sama_0638 0.16 +0.0 794,272 - Sama_0638 0.16 -1.9 794,272 - Sama_0638 0.16 -2.2 794,272 - Sama_0638 0.16 -0.4 794,272 - Sama_0638 0.16 -0.4 794,272 - Sama_0638 0.16 +0.8 794,272 - Sama_0638 0.16 -0.0 794,368 + Sama_0638 0.23 -2.2 794,369 - Sama_0638 0.23 -1.5 794,369 - Sama_0638 0.23 -0.5 794,369 - Sama_0638 0.23 -0.6
Or see this region's nucleotide sequence