Strain Fitness in Shewanella amazonensis SB2B around Sama_0322

Experiment: L-Lysine 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0320 and pyrE are separated by 106 nucleotidespyrE and folE are separated by 101 nucleotidesfolE and Sama_0323 are separated by 182 nucleotides Sama_0320: Sama_0320 - tRNA nucleotidyltransferase (RefSeq), at 387,592 to 388,305 _0320 Sama_0321: pyrE - orotate phosphoribosyltransferase (RefSeq), at 388,412 to 389,053 pyrE Sama_0322: folE - GTP cyclohydrolase I (RefSeq), at 389,155 to 389,805 folE Sama_0323: Sama_0323 - prolyl oligopeptidase family protein (RefSeq), at 389,988 to 391,937 _0323 Position (kb) 389 390Strain fitness (log2 ratio) -2 -1 0 1 2at 388.281 kb on + strandat 388.348 kb on + strandat 388.368 kb on + strandat 388.369 kb on - strandat 388.399 kb on + strandat 388.400 kb on - strandat 388.400 kb on - strandat 388.421 kb on + strandat 388.435 kb on + strandat 388.456 kb on + strandat 388.457 kb on - strandat 388.457 kb on - strandat 388.462 kb on - strandat 388.480 kb on + strand, within pyrEat 388.509 kb on - strand, within pyrEat 388.509 kb on - strand, within pyrEat 388.509 kb on - strand, within pyrEat 388.531 kb on + strand, within pyrEat 388.531 kb on + strand, within pyrEat 388.532 kb on - strand, within pyrEat 388.532 kb on - strand, within pyrEat 388.535 kb on - strand, within pyrEat 388.569 kb on - strand, within pyrEat 388.569 kb on - strand, within pyrEat 388.625 kb on + strand, within pyrEat 388.625 kb on + strand, within pyrEat 388.626 kb on - strand, within pyrEat 388.626 kb on - strand, within pyrEat 388.627 kb on + strand, within pyrEat 388.627 kb on + strand, within pyrEat 388.627 kb on + strand, within pyrEat 388.627 kb on + strand, within pyrEat 388.628 kb on - strand, within pyrEat 388.628 kb on - strand, within pyrEat 388.628 kb on - strand, within pyrEat 388.695 kb on - strand, within pyrEat 388.702 kb on + strand, within pyrEat 388.708 kb on + strand, within pyrEat 388.708 kb on + strand, within pyrEat 388.709 kb on - strand, within pyrEat 388.709 kb on - strand, within pyrEat 388.738 kb on + strand, within pyrEat 388.738 kb on + strand, within pyrEat 388.765 kb on + strand, within pyrEat 388.765 kb on + strand, within pyrEat 388.766 kb on - strand, within pyrEat 388.771 kb on + strand, within pyrEat 388.771 kb on + strand, within pyrEat 388.771 kb on + strand, within pyrEat 388.771 kb on + strand, within pyrEat 388.772 kb on - strand, within pyrEat 388.772 kb on - strand, within pyrEat 388.772 kb on - strand, within pyrEat 388.772 kb on - strand, within pyrEat 388.772 kb on - strand, within pyrEat 388.772 kb on - strand, within pyrEat 389.022 kb on + strandat 389.030 kb on + strandat 389.030 kb on + strandat 389.051 kb on + strandat 389.051 kb on + strandat 389.051 kb on + strandat 389.052 kb on - strandat 389.052 kb on - strandat 389.064 kb on + strandat 389.064 kb on + strandat 389.064 kb on + strandat 389.071 kb on + strandat 389.100 kb on + strandat 389.101 kb on - strandat 389.101 kb on - strandat 389.144 kb on + strandat 389.144 kb on + strandat 389.144 kb on + strandat 389.144 kb on + strandat 389.144 kb on + strandat 389.144 kb on + strandat 389.145 kb on - strandat 389.145 kb on - strandat 389.150 kb on + strandat 389.151 kb on - strandat 389.151 kb on - strandat 389.151 kb on - strandat 389.863 kb on - strandat 389.863 kb on - strandat 389.863 kb on - strandat 389.898 kb on - strandat 389.918 kb on + strandat 389.926 kb on - strandat 389.936 kb on + strandat 390.031 kb on + strandat 390.031 kb on + strandat 390.032 kb on - strandat 390.032 kb on - strandat 390.034 kb on + strandat 390.034 kb on + strandat 390.034 kb on + strandat 390.034 kb on + strandat 390.034 kb on + strandat 390.034 kb on + strandat 390.034 kb on + strandat 390.035 kb on - strandat 390.035 kb on - strandat 390.035 kb on - strandat 390.035 kb on - strandat 390.035 kb on - strandat 390.035 kb on - strandat 390.056 kb on + strandat 390.058 kb on + strandat 390.059 kb on - strandat 390.103 kb on + strandat 390.103 kb on + strandat 390.103 kb on + strandat 390.104 kb on - strandat 390.140 kb on - strandat 390.177 kb on + strandat 390.178 kb on - strandat 390.203 kb on + strand, within Sama_0323at 390.259 kb on - strand, within Sama_0323at 390.259 kb on - strand, within Sama_0323at 390.278 kb on + strand, within Sama_0323at 390.331 kb on + strand, within Sama_0323at 390.331 kb on + strand, within Sama_0323at 390.332 kb on - strand, within Sama_0323at 390.332 kb on - strand, within Sama_0323at 390.332 kb on - strand, within Sama_0323at 390.332 kb on - strand, within Sama_0323at 390.332 kb on - strand, within Sama_0323at 390.332 kb on - strand, within Sama_0323at 390.332 kb on - strand, within Sama_0323at 390.333 kb on + strand, within Sama_0323at 390.333 kb on + strand, within Sama_0323at 390.333 kb on + strand, within Sama_0323at 390.333 kb on + strand, within Sama_0323at 390.333 kb on + strand, within Sama_0323at 390.333 kb on + strand, within Sama_0323at 390.333 kb on + strand, within Sama_0323at 390.334 kb on - strand, within Sama_0323at 390.334 kb on - strand, within Sama_0323at 390.334 kb on - strand, within Sama_0323at 390.334 kb on - strand, within Sama_0323at 390.334 kb on - strand, within Sama_0323at 390.334 kb on - strand, within Sama_0323at 390.400 kb on + strand, within Sama_0323at 390.425 kb on + strand, within Sama_0323at 390.426 kb on - strand, within Sama_0323at 390.440 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.480 kb on + strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.481 kb on - strand, within Sama_0323at 390.491 kb on - strand, within Sama_0323at 390.518 kb on - strand, within Sama_0323at 390.544 kb on + strand, within Sama_0323at 390.567 kb on - strand, within Sama_0323at 390.582 kb on + strand, within Sama_0323at 390.582 kb on + strand, within Sama_0323at 390.759 kb on + strand, within Sama_0323at 390.759 kb on + strand, within Sama_0323at 390.760 kb on - strand, within Sama_0323

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine 200 mM
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388,281 + +0.0
388,348 + +0.1
388,368 + +0.1
388,369 - -0.6
388,399 + -1.1
388,400 - +1.2
388,400 - +0.2
388,421 + +0.1
388,435 + -0.1
388,456 + -0.1
388,457 - +0.2
388,457 - +1.1
388,462 - +0.0
388,480 + pyrE Sama_0321 0.11 +0.5
388,509 - pyrE Sama_0321 0.15 +1.4
388,509 - pyrE Sama_0321 0.15 -0.1
388,509 - pyrE Sama_0321 0.15 +0.0
388,531 + pyrE Sama_0321 0.19 +0.8
388,531 + pyrE Sama_0321 0.19 -0.3
388,532 - pyrE Sama_0321 0.19 +0.7
388,532 - pyrE Sama_0321 0.19 +0.0
388,535 - pyrE Sama_0321 0.19 +0.6
388,569 - pyrE Sama_0321 0.24 +0.0
388,569 - pyrE Sama_0321 0.24 +0.8
388,625 + pyrE Sama_0321 0.33 +1.5
388,625 + pyrE Sama_0321 0.33 +0.4
388,626 - pyrE Sama_0321 0.33 -0.3
388,626 - pyrE Sama_0321 0.33 +0.0
388,627 + pyrE Sama_0321 0.33 +1.5
388,627 + pyrE Sama_0321 0.33 +0.0
388,627 + pyrE Sama_0321 0.33 +0.4
388,627 + pyrE Sama_0321 0.33 +0.3
388,628 - pyrE Sama_0321 0.34 -0.1
388,628 - pyrE Sama_0321 0.34 +2.0
388,628 - pyrE Sama_0321 0.34 +1.0
388,695 - pyrE Sama_0321 0.44 +0.1
388,702 + pyrE Sama_0321 0.45 +0.5
388,708 + pyrE Sama_0321 0.46 +0.2
388,708 + pyrE Sama_0321 0.46 +0.9
388,709 - pyrE Sama_0321 0.46 -0.3
388,709 - pyrE Sama_0321 0.46 +0.4
388,738 + pyrE Sama_0321 0.51 +0.8
388,738 + pyrE Sama_0321 0.51 +0.6
388,765 + pyrE Sama_0321 0.55 -0.1
388,765 + pyrE Sama_0321 0.55 +0.9
388,766 - pyrE Sama_0321 0.55 +0.9
388,771 + pyrE Sama_0321 0.56 +0.1
388,771 + pyrE Sama_0321 0.56 +0.6
388,771 + pyrE Sama_0321 0.56 +2.1
388,771 + pyrE Sama_0321 0.56 +1.4
388,772 - pyrE Sama_0321 0.56 +1.0
388,772 - pyrE Sama_0321 0.56 -0.8
388,772 - pyrE Sama_0321 0.56 +0.8
388,772 - pyrE Sama_0321 0.56 +0.0
388,772 - pyrE Sama_0321 0.56 +1.3
388,772 - pyrE Sama_0321 0.56 +0.8
389,022 + +0.2
389,030 + +0.0
389,030 + +1.6
389,051 + -0.0
389,051 + -0.8
389,051 + -0.2
389,052 - -0.7
389,052 - +1.0
389,064 + +0.0
389,064 + -1.6
389,064 + -0.3
389,071 + -0.7
389,100 + -0.8
389,101 - -0.4
389,101 - -0.4
389,144 + +2.4
389,144 + +1.0
389,144 + -0.7
389,144 + -0.8
389,144 + -0.3
389,144 + +0.6
389,145 - +0.7
389,145 - -0.3
389,150 + -0.6
389,151 - -0.7
389,151 - +1.0
389,151 - -0.6
389,863 - +0.2
389,863 - +1.4
389,863 - -1.2
389,898 - +0.0
389,918 + -0.4
389,926 - -1.8
389,936 + -1.4
390,031 + -1.0
390,031 + -0.3
390,032 - +1.9
390,032 - +1.6
390,034 + -0.4
390,034 + +1.2
390,034 + +0.7
390,034 + +0.7
390,034 + +0.3
390,034 + +1.0
390,034 + -2.6
390,035 - -0.2
390,035 - +0.0
390,035 - +0.0
390,035 - -0.3
390,035 - -0.1
390,035 - -0.2
390,056 + -0.1
390,058 + -1.0
390,059 - +0.6
390,103 + +0.2
390,103 + -1.1
390,103 + +0.5
390,104 - +0.5
390,140 - -0.0
390,177 + -0.3
390,178 - -0.6
390,203 + Sama_0323 0.11 +1.3
390,259 - Sama_0323 0.14 -0.0
390,259 - Sama_0323 0.14 +0.1
390,278 + Sama_0323 0.15 -0.1
390,331 + Sama_0323 0.18 +0.5
390,331 + Sama_0323 0.18 -0.9
390,332 - Sama_0323 0.18 +0.4
390,332 - Sama_0323 0.18 +0.0
390,332 - Sama_0323 0.18 -0.1
390,332 - Sama_0323 0.18 +1.0
390,332 - Sama_0323 0.18 -0.8
390,332 - Sama_0323 0.18 +0.5
390,332 - Sama_0323 0.18 +0.3
390,333 + Sama_0323 0.18 -0.6
390,333 + Sama_0323 0.18 -0.2
390,333 + Sama_0323 0.18 +0.6
390,333 + Sama_0323 0.18 +0.6
390,333 + Sama_0323 0.18 -0.6
390,333 + Sama_0323 0.18 +1.7
390,333 + Sama_0323 0.18 +0.6
390,334 - Sama_0323 0.18 +0.4
390,334 - Sama_0323 0.18 +0.1
390,334 - Sama_0323 0.18 +1.3
390,334 - Sama_0323 0.18 +0.3
390,334 - Sama_0323 0.18 +0.4
390,334 - Sama_0323 0.18 +1.3
390,400 + Sama_0323 0.21 +0.5
390,425 + Sama_0323 0.22 +0.1
390,426 - Sama_0323 0.22 +0.4
390,440 + Sama_0323 0.23 -0.7
390,480 + Sama_0323 0.25 +0.4
390,480 + Sama_0323 0.25 +0.9
390,480 + Sama_0323 0.25 -1.1
390,480 + Sama_0323 0.25 +0.0
390,480 + Sama_0323 0.25 +1.7
390,480 + Sama_0323 0.25 -0.1
390,480 + Sama_0323 0.25 -0.8
390,480 + Sama_0323 0.25 -0.9
390,480 + Sama_0323 0.25 +0.4
390,480 + Sama_0323 0.25 -2.7
390,480 + Sama_0323 0.25 +0.4
390,480 + Sama_0323 0.25 -0.7
390,480 + Sama_0323 0.25 -0.5
390,481 - Sama_0323 0.25 -0.8
390,481 - Sama_0323 0.25 +0.9
390,481 - Sama_0323 0.25 -0.1
390,481 - Sama_0323 0.25 +0.0
390,481 - Sama_0323 0.25 -1.0
390,481 - Sama_0323 0.25 +0.4
390,481 - Sama_0323 0.25 +0.3
390,481 - Sama_0323 0.25 -0.2
390,481 - Sama_0323 0.25 +1.0
390,481 - Sama_0323 0.25 +0.2
390,481 - Sama_0323 0.25 +0.2
390,481 - Sama_0323 0.25 +0.0
390,481 - Sama_0323 0.25 +0.0
390,481 - Sama_0323 0.25 +0.3
390,491 - Sama_0323 0.26 -0.2
390,518 - Sama_0323 0.27 -1.8
390,544 + Sama_0323 0.29 +0.8
390,567 - Sama_0323 0.30 +0.3
390,582 + Sama_0323 0.30 -0.0
390,582 + Sama_0323 0.30 +0.1
390,759 + Sama_0323 0.40 -0.6
390,759 + Sama_0323 0.40 -1.4
390,760 - Sama_0323 0.40 +0.6

Or see this region's nucleotide sequence