Experiment: L-Lysine 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0109 and Sama_0110 are separated by 204 nucleotides Sama_0110 and Sama_0111 are separated by 18 nucleotides Sama_0111 and Sama_0112 are separated by 136 nucleotides Sama_0112 and Sama_0113 overlap by 4 nucleotides
Sama_0109: Sama_0109 - glycosyl transferase, group 1 family protein (RefSeq), at 122,136 to 123,344
_0109
Sama_0110: Sama_0110 - pantetheine-phosphate adenylyltransferase (RefSeq), at 123,549 to 124,118
_0110
Sama_0111: Sama_0111 - hypothetical protein (RefSeq), at 124,137 to 125,621
_0111
Sama_0112: Sama_0112 - glycosyl transferase, group 2 family protein (RefSeq), at 125,758 to 126,489
_0112
Sama_0113: Sama_0113 - hypothetical protein (RefSeq), at 126,486 to 127,163
_0113
Position (kb) 124
125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.139 kb on + strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.140 kb on - strand, within Sama_0109 at 123.142 kb on - strand, within Sama_0109 at 123.142 kb on - strand, within Sama_0109 at 123.161 kb on + strand, within Sama_0109 at 123.161 kb on + strand, within Sama_0109 at 123.162 kb on - strand, within Sama_0109 at 123.275 kb on - strand at 123.283 kb on + strand at 123.283 kb on + strand at 123.284 kb on - strand at 123.284 kb on - strand at 123.307 kb on + strand at 123.308 kb on - strand at 123.327 kb on + strand at 123.327 kb on + strand at 123.327 kb on + strand at 123.327 kb on + strand at 123.328 kb on - strand at 123.328 kb on - strand at 123.328 kb on - strand at 123.379 kb on + strand at 123.380 kb on - strand at 123.380 kb on - strand at 123.380 kb on - strand at 123.382 kb on + strand at 123.484 kb on + strand at 123.484 kb on + strand at 123.485 kb on - strand at 123.485 kb on - strand at 123.488 kb on + strand at 123.488 kb on + strand at 123.488 kb on + strand at 123.488 kb on + strand at 123.489 kb on - strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.563 kb on + strand at 123.564 kb on - strand at 123.564 kb on - strand at 123.564 kb on - strand at 123.564 kb on - strand at 123.607 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.630 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 123.632 kb on + strand, within Sama_0110 at 124.093 kb on + strand at 124.093 kb on + strand at 124.094 kb on - strand at 124.110 kb on - strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.125 kb on - strand at 124.136 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.143 kb on + strand at 124.153 kb on + strand at 124.153 kb on + strand at 125.692 kb on + strand at 125.750 kb on + strand at 125.773 kb on - strand at 125.773 kb on - strand at 125.801 kb on + strand at 125.801 kb on + strand at 125.801 kb on + strand at 125.801 kb on + strand at 125.801 kb on + strand at 125.802 kb on - strand at 125.802 kb on - strand at 125.802 kb on - strand at 125.802 kb on - strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.805 kb on + strand at 125.806 kb on - strand at 125.806 kb on - strand at 125.806 kb on - strand at 125.858 kb on + strand, within Sama_0112 at 125.858 kb on + strand, within Sama_0112 at 125.858 kb on + strand, within Sama_0112 at 125.858 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.864 kb on + strand, within Sama_0112 at 125.865 kb on - strand, within Sama_0112 at 125.865 kb on - strand, within Sama_0112 at 125.865 kb on - strand, within Sama_0112 at 125.865 kb on - strand, within Sama_0112 at 125.931 kb on + strand, within Sama_0112 at 125.931 kb on + strand, within Sama_0112 at 125.932 kb on - strand, within Sama_0112 at 125.932 kb on - strand, within Sama_0112 at 125.932 kb on - strand, within Sama_0112 at 125.942 kb on + strand, within Sama_0112 at 125.942 kb on + strand, within Sama_0112 at 125.942 kb on + strand, within Sama_0112 at 125.943 kb on - strand, within Sama_0112 at 125.943 kb on - strand, within Sama_0112 at 125.943 kb on - strand, within Sama_0112 at 125.973 kb on + strand, within Sama_0112 at 125.973 kb on + strand, within Sama_0112 at 125.974 kb on - strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.981 kb on + strand, within Sama_0112 at 125.982 kb on - strand, within Sama_0112 at 125.982 kb on - strand, within Sama_0112 at 125.982 kb on - strand, within Sama_0112 at 125.982 kb on - strand, within Sama_0112 at 125.993 kb on + strand, within Sama_0112 at 125.993 kb on + strand, within Sama_0112 at 125.993 kb on + strand, within Sama_0112 at 125.994 kb on - strand, within Sama_0112 at 126.108 kb on + strand, within Sama_0112 at 126.108 kb on + strand, within Sama_0112 at 126.123 kb on + strand, within Sama_0112 at 126.124 kb on - strand, within Sama_0112 at 126.124 kb on - strand, within Sama_0112 at 126.177 kb on + strand, within Sama_0112 at 126.177 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.276 kb on + strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.277 kb on - strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.286 kb on + strand, within Sama_0112 at 126.287 kb on - strand, within Sama_0112 at 126.287 kb on - strand, within Sama_0112 at 126.287 kb on - strand, within Sama_0112 at 126.366 kb on - strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.373 kb on + strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.374 kb on - strand, within Sama_0112 at 126.449 kb on + strand at 126.449 kb on + strand at 126.449 kb on + strand at 126.449 kb on + strand at 126.449 kb on + strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.450 kb on - strand at 126.475 kb on + strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.513 kb on - strand at 126.518 kb on - strand at 126.518 kb on - strand at 126.518 kb on - strand at 126.518 kb on - strand at 126.524 kb on + strand at 126.524 kb on + strand at 126.524 kb on + strand at 126.524 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.544 kb on + strand at 126.545 kb on - strand at 126.545 kb on - strand at 126.545 kb on - strand at 126.545 kb on - strand at 126.545 kb on - strand at 126.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Lysine 200 mM remove 123,139 + Sama_0109 0.83 +1.0 123,139 + Sama_0109 0.83 +1.2 123,139 + Sama_0109 0.83 +1.4 123,139 + Sama_0109 0.83 +1.2 123,139 + Sama_0109 0.83 +0.2 123,139 + Sama_0109 0.83 +0.7 123,140 - Sama_0109 0.83 +0.5 123,140 - Sama_0109 0.83 +0.7 123,140 - Sama_0109 0.83 -0.0 123,140 - Sama_0109 0.83 +1.1 123,140 - Sama_0109 0.83 +1.1 123,140 - Sama_0109 0.83 +1.0 123,140 - Sama_0109 0.83 +0.8 123,140 - Sama_0109 0.83 +0.9 123,140 - Sama_0109 0.83 +1.3 123,140 - Sama_0109 0.83 -0.4 123,140 - Sama_0109 0.83 +0.6 123,140 - Sama_0109 0.83 +1.8 123,140 - Sama_0109 0.83 +0.4 123,140 - Sama_0109 0.83 +1.4 123,140 - Sama_0109 0.83 +2.3 123,142 - Sama_0109 0.83 +0.7 123,142 - Sama_0109 0.83 +0.5 123,161 + Sama_0109 0.85 +0.6 123,161 + Sama_0109 0.85 +0.2 123,162 - Sama_0109 0.85 +1.2 123,275 - +1.1 123,283 + +1.1 123,283 + +0.5 123,284 - +1.0 123,284 - +1.5 123,307 + +0.8 123,308 - +0.9 123,327 + +2.3 123,327 + +0.9 123,327 + +0.8 123,327 + +1.0 123,328 - +0.5 123,328 - +1.0 123,328 - +1.0 123,379 + +2.2 123,380 - +0.9 123,380 - +1.4 123,380 - +0.7 123,382 + +1.7 123,484 + +0.3 123,484 + +0.5 123,485 - +0.4 123,485 - -0.4 123,488 + +0.5 123,488 + +0.8 123,488 + -0.1 123,488 + +2.1 123,489 - -0.2 123,563 + +1.0 123,563 + +0.1 123,563 + -0.1 123,563 + +0.5 123,563 + -0.1 123,563 + +0.2 123,564 - -1.1 123,564 - -0.5 123,564 - -1.4 123,564 - +0.2 123,607 + Sama_0110 0.10 +0.1 123,630 + Sama_0110 0.14 -0.1 123,630 + Sama_0110 0.14 +1.2 123,630 + Sama_0110 0.14 +1.1 123,630 + Sama_0110 0.14 +1.2 123,630 + Sama_0110 0.14 +1.4 123,630 + Sama_0110 0.14 +0.6 123,630 + Sama_0110 0.14 -0.3 123,630 + Sama_0110 0.14 +0.8 123,630 + Sama_0110 0.14 +0.7 123,630 + Sama_0110 0.14 +0.7 123,630 + Sama_0110 0.14 +1.9 123,630 + Sama_0110 0.14 +0.7 123,630 + Sama_0110 0.14 +1.5 123,630 + Sama_0110 0.14 +1.7 123,630 + Sama_0110 0.14 +1.7 123,632 + Sama_0110 0.15 +2.4 123,632 + Sama_0110 0.15 +1.8 123,632 + Sama_0110 0.15 +2.8 123,632 + Sama_0110 0.15 +1.4 123,632 + Sama_0110 0.15 +0.5 123,632 + Sama_0110 0.15 +2.2 123,632 + Sama_0110 0.15 +0.7 124,093 + +0.9 124,093 + -0.9 124,094 - -1.2 124,110 - -0.5 124,124 + +0.2 124,124 + +0.9 124,124 + +0.1 124,124 + -0.7 124,124 + +0.4 124,124 + -0.6 124,125 - -1.8 124,136 + +1.3 124,143 + -1.2 124,143 + -0.4 124,143 + +1.6 124,143 + -0.0 124,143 + -1.1 124,143 + +0.4 124,143 + +0.2 124,153 + +0.4 124,153 + +0.0 125,692 + -1.0 125,750 + +0.5 125,773 - +0.1 125,773 - -1.4 125,801 + +0.1 125,801 + +0.1 125,801 + +0.1 125,801 + -0.2 125,801 + +0.7 125,802 - -0.8 125,802 - +0.4 125,802 - +1.2 125,802 - +0.9 125,805 + +0.5 125,805 + -0.2 125,805 + +0.8 125,805 + +0.5 125,805 + -1.1 125,805 + -0.3 125,805 + +1.2 125,805 + +0.1 125,805 + +0.9 125,805 + -0.0 125,805 + +1.0 125,805 + +0.8 125,805 + +0.7 125,806 - -0.8 125,806 - -0.2 125,806 - -1.2 125,858 + Sama_0112 0.14 +0.6 125,858 + Sama_0112 0.14 +0.4 125,858 + Sama_0112 0.14 -0.4 125,858 + Sama_0112 0.14 +3.0 125,864 + Sama_0112 0.14 +0.8 125,864 + Sama_0112 0.14 +0.5 125,864 + Sama_0112 0.14 +0.5 125,864 + Sama_0112 0.14 +0.2 125,864 + Sama_0112 0.14 +0.6 125,864 + Sama_0112 0.14 -0.4 125,864 + Sama_0112 0.14 -0.4 125,865 - Sama_0112 0.15 -0.9 125,865 - Sama_0112 0.15 -0.5 125,865 - Sama_0112 0.15 +0.8 125,865 - Sama_0112 0.15 +2.2 125,931 + Sama_0112 0.24 -0.7 125,931 + Sama_0112 0.24 -0.3 125,932 - Sama_0112 0.24 +0.3 125,932 - Sama_0112 0.24 -1.0 125,932 - Sama_0112 0.24 +0.6 125,942 + Sama_0112 0.25 -0.5 125,942 + Sama_0112 0.25 -0.2 125,942 + Sama_0112 0.25 -0.7 125,943 - Sama_0112 0.25 -0.0 125,943 - Sama_0112 0.25 -0.5 125,943 - Sama_0112 0.25 -0.7 125,973 + Sama_0112 0.29 +0.6 125,973 + Sama_0112 0.29 -0.7 125,974 - Sama_0112 0.30 -0.7 125,981 + Sama_0112 0.30 -0.2 125,981 + Sama_0112 0.30 -0.2 125,981 + Sama_0112 0.30 +0.4 125,981 + Sama_0112 0.30 +0.6 125,981 + Sama_0112 0.30 +0.2 125,981 + Sama_0112 0.30 -0.7 125,982 - Sama_0112 0.31 +1.1 125,982 - Sama_0112 0.31 +0.9 125,982 - Sama_0112 0.31 +0.7 125,982 - Sama_0112 0.31 -0.1 125,993 + Sama_0112 0.32 -0.3 125,993 + Sama_0112 0.32 +0.4 125,993 + Sama_0112 0.32 +0.1 125,994 - Sama_0112 0.32 +0.7 126,108 + Sama_0112 0.48 -0.3 126,108 + Sama_0112 0.48 -0.2 126,123 + Sama_0112 0.50 -0.9 126,124 - Sama_0112 0.50 +0.5 126,124 - Sama_0112 0.50 -0.1 126,177 + Sama_0112 0.57 +0.0 126,177 + Sama_0112 0.57 +0.5 126,276 + Sama_0112 0.71 -0.7 126,276 + Sama_0112 0.71 +1.8 126,276 + Sama_0112 0.71 +0.3 126,276 + Sama_0112 0.71 +0.4 126,276 + Sama_0112 0.71 -0.3 126,276 + Sama_0112 0.71 +0.4 126,276 + Sama_0112 0.71 +0.8 126,276 + Sama_0112 0.71 +0.4 126,276 + Sama_0112 0.71 -0.4 126,277 - Sama_0112 0.71 -0.1 126,277 - Sama_0112 0.71 +0.7 126,277 - Sama_0112 0.71 +0.3 126,277 - Sama_0112 0.71 -0.0 126,277 - Sama_0112 0.71 +0.8 126,286 + Sama_0112 0.72 -0.8 126,286 + Sama_0112 0.72 +0.6 126,286 + Sama_0112 0.72 +0.5 126,286 + Sama_0112 0.72 -1.0 126,286 + Sama_0112 0.72 +0.4 126,286 + Sama_0112 0.72 -1.6 126,286 + Sama_0112 0.72 -3.1 126,287 - Sama_0112 0.72 +0.8 126,287 - Sama_0112 0.72 -1.0 126,287 - Sama_0112 0.72 -0.0 126,366 - Sama_0112 0.83 +0.4 126,373 + Sama_0112 0.84 -0.4 126,373 + Sama_0112 0.84 -2.3 126,373 + Sama_0112 0.84 +0.3 126,373 + Sama_0112 0.84 -0.1 126,373 + Sama_0112 0.84 -0.6 126,374 - Sama_0112 0.84 +0.1 126,374 - Sama_0112 0.84 +0.9 126,374 - Sama_0112 0.84 +0.3 126,374 - Sama_0112 0.84 -0.4 126,374 - Sama_0112 0.84 -0.4 126,374 - Sama_0112 0.84 +0.4 126,374 - Sama_0112 0.84 +0.1 126,374 - Sama_0112 0.84 +0.6 126,449 + +0.3 126,449 + +0.2 126,449 + +1.0 126,449 + +0.4 126,449 + +0.8 126,450 - +0.9 126,450 - +0.0 126,450 - +1.1 126,450 - +1.0 126,450 - +0.6 126,450 - -0.5 126,475 + +1.9 126,513 - -1.4 126,513 - -0.4 126,513 - -0.6 126,518 - +0.2 126,518 - +0.8 126,518 - +0.3 126,518 - +0.2 126,524 + +0.8 126,524 + +0.4 126,524 + +0.4 126,524 + -0.7 126,544 + +0.3 126,544 + -0.6 126,544 + +1.5 126,544 + -0.6 126,544 + +0.6 126,544 + +1.0 126,545 - -0.0 126,545 - +0.3 126,545 - +1.0 126,545 - -2.1 126,545 - +0.7 126,545 - -0.2
Or see this region's nucleotide sequence